Rw7G037560

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000101
Physical Location & Seq
Reverse (-)
56975507 .. 56976527
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037560.1

Sequence Viewer

Length: 564 bp
ATGTACAATGATCTCGTCAACAACACCATCGACAAGGATTTGAGAAAGGTCTTCTGCAAGTGGCGCATCCGTGGCCTCAAGAAAGAAGCATTGAGGATGTTCCTTGCTTTGGTAGATGATGGAGACGTAGACGAGGTCAAGGAGATTGTTAGGCCCACCCTAGAGACAGGCGTAGAATCCATGGTTGTAATACACACCTCCATTATTAAGGCCTACCTCGATGCTGGAAAGACCAAGGGAGCTCTCGAGGCCTACCGTGGCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTTTTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGAGGCGGCCCAATGCTGCTACTTATACTGCGGTTATAGAGGCCATTGCAAGGAAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAATATTTGGATTATGAAATCCTGCTTTTCTGGATTATGAAATCCTTGCAGTCGGTATATTTAATTCTTGGTGCATTCTTGTCATCTCCTGAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

187

Amino Acids

21.04

Weight (kDa)

5.61

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 57 - 149 1.3e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 62 - 107 1.3e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 388, 413
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 109, 432
AgsI TTSAA 1 cut(s) 344
AluBI AGCT 3 cut(s) 242, 269, 452
AluI AGCT 3 cut(s) 242, 269, 452
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 117, 158
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 6 cut(s) 73, 152, 210, 249, 389, 423
ApeKI GCWGC 3 cut(s) 269, 398, 449
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 153, 390
AvaI CYCGRG 1 cut(s) 245
BanII GRGCYC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 256, 385, 461
BccI CCATC 3 cut(s) 35, 113, 367
BcoDI GTCTC 2 cut(s) 117, 158
BfaI CTAG 1 cut(s) 161
BisI GCNGC 4 cut(s) 270, 389, 399, 450
BlsI GCNGC 4 cut(s) 271, 390, 400, 451
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 153, 390
BmsI GCATC 3 cut(s) 75, 211, 337
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 62, 386
BsaJI CCNNGG 4 cut(s) 70, 180, 234, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 432
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 70, 180, 234, 256
BseGI GGATG 2 cut(s) 66, 102
BseLI CCNNNNNNNGG 2 cut(s) 109, 432
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 470, 473
BseXI GCAGC 3 cut(s) 256, 385, 461
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 6 cut(s) 75, 154, 212, 251, 391, 425
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 109, 432
BsmAI GTCTC 2 cut(s) 117, 158
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 6 cut(s) 75, 154, 212, 251, 391, 425
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 388, 413
BspANI GGCC 6 cut(s) 75, 154, 212, 251, 391, 425
BspCNI CTCAG 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 4 cut(s) 70, 180, 234, 256
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 180, 234
Bst4CI ACNGT 2 cut(s) 257, 304
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 453, 561
BstDSI CCRYGG 3 cut(s) 70, 180, 256
BstF5I GGATG 2 cut(s) 66, 102
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 117, 158
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 63, 72, 248, 278
BstNSI RCATGY 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 256, 385, 461
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 6 cut(s) 75, 154, 212, 251, 391, 425
BtgI CCRYGG 3 cut(s) 70, 180, 256
BtsCI GGATG 2 cut(s) 66, 102
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 300, 321
Cac8I GCNNGC 1 cut(s) 362
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 153, 390
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 181, 262
CviJI RGCY 9 cut(s) 75, 154, 212, 242, 251, 269, 391, 425, 452
CviKI_1 RGCY 9 cut(s) 75, 154, 212, 242, 251, 269, 391, 425, 452
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 453, 561
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 180, 234
Eco147I AGGCCT 2 cut(s) 212, 251
Eco24I GRGCYC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 242
EcoT14I CCWWGG 2 cut(s) 180, 234
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 180, 234
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 2 cut(s) 184, 265
FaiI YATR 7 cut(s) 182, 263, 408, 419, 480, 503, 523
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 330
FatI CATG 2 cut(s) 180, 261
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 270, 389, 399, 450
FokI GGATG 2 cut(s) 53, 109
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 4 cut(s) 270, 389, 399, 450
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 65
GluI GCNGC 4 cut(s) 270, 389, 399, 450
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 6 cut(s) 75, 154, 212, 251, 391, 425
HhaI GCGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 184, 265
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 176, 318
Hpy166II GTNNAC 2 cut(s) 19, 130
Hpy188III TCNNGA 4 cut(s) 79, 245, 496, 554
Hpy8I GTNNAC 2 cut(s) 19, 130
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 257, 304
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 57, 431, 514, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 72, 248, 278
HpyF3I CTNAG 2 cut(s) 453, 561
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 184, 265
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 153, 210, 258, 481, 500
Lsp1109I GCAGC 3 cut(s) 256, 385, 461
LweI GCATC 3 cut(s) 75, 211, 337
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 43, 356
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 528
MlyI GAGTC 1 cut(s) 312
MseI TTAA 3 cut(s) 207, 308, 527
MspA1I CMGCKG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 539
MwoI GCNNNNNNNGC 4 cut(s) 63, 72, 248, 278
NcoI CCATGG 1 cut(s) 180
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 184, 265
NspI RCATGY 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 245
PceI AGGCCT 2 cut(s) 212, 251
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 176
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 4 cut(s) 271, 390, 400, 451
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 272
PspPI GGNCC 2 cut(s) 153, 390
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 207, 308, 527
SatI GCNGC 4 cut(s) 270, 389, 399, 450
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 153, 390
SchI GAGTC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 51, 129, 138, 200, 219, 244, 271, 454
SfaNI GCATC 3 cut(s) 75, 211, 337
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 77, 245, 365
SmoI CTYRAG 3 cut(s) 77, 245, 365
Sse9I AATT 1 cut(s) 528
SseBI AGGCCT 2 cut(s) 212, 251
SsiI CCGC 2 cut(s) 388, 413
SspI AATATT 1 cut(s) 470
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 2 cut(s) 212, 251
StyI CCWWGG 2 cut(s) 180, 234
TaaI ACNGT 2 cut(s) 257, 304
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 30, 219, 246
TasI AATT 1 cut(s) 528
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 3 cut(s) 207, 308, 527
Tru9I TTAA 3 cut(s) 207, 308, 527
TscAI CASTG 2 cut(s) 307, 328
TseI GCWGC 3 cut(s) 269, 398, 449
TspDTI ATGAA 2 cut(s) 495, 518
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 307, 328
Tth111I GACNNNGTC 1 cut(s) 134
XceI RCATGY 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.