Rorug07G0274400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Reverse (-)
26145814 .. 26147490
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0274400.1

Sequence Viewer

Length: 1485 bp
ATGGCCTCCATCATCAAACCCAAGAAACCCATTTCCTCTTCCCAATCAAATCTTTGCACCACCCTCTTCTTCATCGTCCTCTTCACCATCCCCGTCCTCTTTCTCCTCCACACCTCCACTACCTCTTCTATCTGCACTTCTCTCTCCACCCACCTCAACAAACCCCCCTTCTCCGGCGACCTCCGTGCCGCCGAGTTCTCCTGGAACCGCCTCCCCTTCCTCCAACACCGCCCTAATCCCCCAACCTCCCTCAAAATCGCGGTCTTCTCCCGGAAATGGCCCATCGCCACCACCCCCGGCGGCATGGAGCGCCACGCTCACACTCTCCACACCGCTCTCTCTCTCCTCGGCCACCAAGTTCATGTCTTCACCTCCCCAGTCAAACCGCAAGAGCTCATTAGTCAACAAAACCTCAACCTCAGCCCTACCTCCTCCCCGCCCTACCTCCACTTCCACGAAGGCGAGCCCGGCTACTGGAGATACAACAAGGCCTACGAGCAGTTCCTGGAAGAAGACCAGAAACAGAAGTTCGACGTGGTACACTCCGAAAGCGTGGCGCTTCCTCATTGGCTAGCTCGCCGCCTCCCCAACCTCGCCGTCTCCTGGCACGGCATAGCCCTCGAGAGCTTGCACTCCAACATCTTCCAGGACCTGACACGTAAGCAAGGCGAGCCTATAGACCCGGCCTTCAACAAAAGTTTACAAGGAGTAGTCCCAAAAGTCCTCAACGAGATCAGGTTCTTCCATAACTACGCCCATCACGTAGCTATTAGCGACAGTTGTGGAGAAATGCTTAGGGACGTGTACCAAATACCGAACCAGAGAGTCCATGTCATACTCAACGGCGTCAACGAAGAAGATTTTGGTGTGGATTCGAAGCTCGGGGAAGAATTTAGAGGTGGAATAGGAATACCCCAAAATGCTAGCTTGGTGTTTGGAGTGGCGGGTAGGTTAGTCAAGGACAAAGGCCATCCTATTCTGTATGAAGCTTTCTCTGAACTCATAGCCAAACATCCAAATGTGTATCTGATTGTGGCCGGTTCTGGACCATGGGAGCAGCGTTACAAGGATTTAGGTCCTCGTGTACTTGTTCTCGGCTCTATGAGTCCTTCTAAACTACATGCCTTCTACAATGCCATAGATGTTTTTGTGAACCCGACCCTTAGGCCGCAAGGTCTTGACCTGACCCTCATGGAGGCGATGATGAGTGGGAAGCCGGTGATGGCCTCAAGGTTTCCGAGTATTAAAGGAAGCATTGTCGTCGACGATGAGTTCGGGTTTATGTTTGCTCCGAACGTCGCGTCGTTGCTGGAGGCTTTGGAGTTGGCTGTGAAAGAAGGGTCGAAGAGGATGAGTCAACGAGGGAAGGCGTGTAGGGTGTACGCGAGTTCCATGTTTACTGCGAGGAAGATGGCATTGGCATACGAGAGGTTGTTTCTTTGTATAAAGAATGATACATTTTGTAACTATCCTTCAGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

494

Amino Acids

55.26

Weight (kDa)

8.95

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 99 - 286 2.2e-20 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 100 - 282 1.8e-10 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 310 - 452 7.1e-22 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 311 - 441 4.8e-21 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 1263
AccII CGCG 3 cut(s) 260, 1301, 1385
AcoI YGGCCR 2 cut(s) 349, 1035
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 1 cut(s) 1458
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 4 cut(s) 540, 806, 1086, 1382
AfiI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
AflIII ACRYGT 2 cut(s) 656, 801
AgsI TTSAA 1 cut(s) 691
AjiI CACGTC 2 cut(s) 535, 802
AjnI CCWGG 4 cut(s) 200, 504, 602, 645
AjuI GAANNNNNNNTTGG 4 cut(s) 846, 878, 1400, 1432
AluBI AGCT 8 cut(s) 394, 575, 627, 767, 880, 927, 989, 1478
AluI AGCT 8 cut(s) 394, 575, 627, 767, 880, 927, 989, 1478
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 604
AlwNI CAGNNNCTG 2 cut(s) 505, 652
Ama87I CYCGRG 2 cut(s) 620, 881
AoxI GGCC 9 cut(s) 3, 278, 349, 489, 684, 967, 1035, 1166, 1224
ApeKI GCWGC 1 cut(s) 1057
ApoI RAATTY 1 cut(s) 890
ArsI GACNNNNNNTTYG 6 cut(s) 246, 278, 1256, 1286, 1288, 1318
AspLEI GCGC 2 cut(s) 312, 559
AspS9I GGNCC 4 cut(s) 279, 649, 1046, 1076
AsuC2I CCSGG 4 cut(s) 271, 297, 468, 683
AsuHPI GGTGA 3 cut(s) 76, 361, 1231
AsuII TTCGAA 1 cut(s) 875
AsuNHI GCTAGC 2 cut(s) 571, 923
AvaI CYCGRG 2 cut(s) 620, 881
AvaII GGWCC 3 cut(s) 649, 1046, 1076
AxyI CCTNAGG 1 cut(s) 1163
BanII GRGCYC 2 cut(s) 396, 468
BarI GAAGNNNNNNTAC 1 cut(s) 1456
BauI CACGAG 1 cut(s) 1080
BbsI GAAGAC 3 cut(s) 256, 358, 519
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 1069
BccI CCATC 7 cut(s) 17, 95, 290, 765, 978, 1216, 1405
BceAI ACGGC 3 cut(s) 581, 625, 859
BcgI CGANNNNNNTGC 6 cut(s) 167, 201, 601, 635, 1243, 1277
BciT130I CCWGG 4 cut(s) 202, 506, 604, 647
BcnI CCSGG 4 cut(s) 271, 297, 468, 683
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 2 cut(s) 572, 924
BfmI CTRYAG 2 cut(s) 675, 1481
BfoI RGCGCY 2 cut(s) 313, 560
BisI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
BlsI GCNGC 5 cut(s) 190, 302, 581, 1059, 1170
Bme1390I CCNGG 8 cut(s) 202, 271, 297, 468, 506, 604, 647, 683
Bme18I GGWCC 3 cut(s) 649, 1046, 1076
BmeT110I CYCGRG 2 cut(s) 620, 881
BmgBI CACGTC 2 cut(s) 535, 802
BmgT120I GGNCC 4 cut(s) 279, 649, 1046, 1076
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 8 cut(s) 202, 271, 297, 468, 506, 604, 647, 683
BmrI ACTGGG 1 cut(s) 371
BmtI GCTAGC 2 cut(s) 575, 927
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 3 cut(s) 256, 358, 519
BpmI CTGGAG 2 cut(s) 496, 1331
Bpu10I CCTNAGC 2 cut(s) 419, 794
Bpu14I TTCGAA 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 1213
BpuMI CCSGG 4 cut(s) 271, 297, 468, 683
BsaAI YACGTR 2 cut(s) 659, 763
BsaHI GRCGYC 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 295, 346, 1049
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
Bse118I RCCGGY 2 cut(s) 1037, 1216
Bse1I ACTGG 2 cut(s) 377, 479
Bse21I CCTNAGG 1 cut(s) 1163
BseBI CCWGG 4 cut(s) 202, 506, 604, 647
BseDI CCNNGG 3 cut(s) 295, 346, 1049
BseGI GGATG 4 cut(s) 87, 970, 1012, 1356
BseLI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 377, 479
BseRI GAGGAG 3 cut(s) 95, 335, 421
BseXI GCAGC 1 cut(s) 1069
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 3 cut(s) 260, 1301, 1385
BshFI GGCC 9 cut(s) 5, 280, 351, 491, 686, 969, 1037, 1168, 1226
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 2 cut(s) 620, 881
BsiSI CCGG 7 cut(s) 174, 271, 297, 468, 683, 1038, 1217
BslFI GGGAC 2 cut(s) 698, 812
BslI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
BsmAI GTCTC 1 cut(s) 604
BsmBI CGTCTC 1 cut(s) 604
BsmFI GGGAC 2 cut(s) 698, 812
BsnI GGCC 9 cut(s) 5, 280, 351, 491, 686, 969, 1037, 1168, 1226
BsoBI CYCGRG 2 cut(s) 620, 881
Bsp119I TTCGAA 1 cut(s) 875
Bsp1286I GDGCHC 2 cut(s) 396, 468
Bsp143I GATC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 1049
BspANI GGCC 9 cut(s) 5, 280, 351, 491, 686, 969, 1037, 1168, 1226
BspCNI CTCAG 1 cut(s) 432
BspFNI CGCG 3 cut(s) 260, 1301, 1385
BspLI GGNNCC 1 cut(s) 206
BspOI GCTAGC 2 cut(s) 575, 927
BspT104I TTCGAA 1 cut(s) 875
BsrBI CCGCTC 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 1037, 1216
BsrI ACTGG 2 cut(s) 377, 479
BssAI RCCGGY 2 cut(s) 1037, 1216
BssECI CCNNGG 3 cut(s) 295, 346, 1049
BssMI GATC 1 cut(s) 732
BssNI GRCGYC 1 cut(s) 846
BssSI CACGAG 1 cut(s) 1080
BssT1I CCWWGG 1 cut(s) 1049
Bst2BI CACGAG 1 cut(s) 1080
Bst2UI CCWGG 4 cut(s) 202, 506, 604, 647
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 5 cut(s) 43, 71, 86, 130, 1340
BstACI GRCGYC 1 cut(s) 846
BstBAI YACGTR 2 cut(s) 659, 763
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 6 cut(s) 464, 573, 577, 629, 671, 925
BstDEI CTNAG 3 cut(s) 419, 794, 1163
BstDSI CCRYGG 1 cut(s) 1049
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 4 cut(s) 87, 970, 1012, 1356
BstFNI CGCG 3 cut(s) 260, 1301, 1385
BstH2I RGCGCY 2 cut(s) 313, 560
BstHHI GCGC 2 cut(s) 312, 559
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 1 cut(s) 732
BstMWI GCNNNNNNNGC 3 cut(s) 309, 468, 670
BstNI CCWGG 4 cut(s) 202, 506, 604, 647
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 8 cut(s) 200, 269, 295, 466, 504, 602, 645, 681
BstSFI CTRYAG 2 cut(s) 675, 1481
BstUI CGCG 3 cut(s) 260, 1301, 1385
BstV1I GCAGC 1 cut(s) 1069
BstV2I GAAGAC 3 cut(s) 256, 358, 519
Bsu36I CCTNAGG 1 cut(s) 1163
BsuRI GGCC 9 cut(s) 5, 280, 351, 491, 686, 969, 1037, 1168, 1226
BtgI CCRYGG 1 cut(s) 1049
BtgZI GCGATG 2 cut(s) 268, 1214
BtrI CACGTC 2 cut(s) 535, 802
BtsCI GGATG 4 cut(s) 87, 970, 1012, 1356
Cac8I GCNNGC 6 cut(s) 464, 573, 577, 629, 671, 925
CaiI CAGNNNCTG 2 cut(s) 505, 652
CfoI GCGC 2 cut(s) 312, 559
Cfr10I RCCGGY 2 cut(s) 1037, 1216
Cfr13I GGNCC 4 cut(s) 279, 649, 1046, 1076
CseI GACGC 2 cut(s) 835, 1290
Csp6I GTAC 4 cut(s) 539, 805, 1085, 1381
CviAII CATG 7 cut(s) 304, 362, 830, 1050, 1121, 1192, 1393
CviQI GTAC 4 cut(s) 539, 805, 1085, 1381
DdeI CTNAG 3 cut(s) 419, 794, 1163
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 349, 1035
Eam1104I CTCTTC 5 cut(s) 43, 71, 86, 130, 1340
EarI CTCTTC 5 cut(s) 43, 71, 86, 130, 1340
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 1049
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 2 cut(s) 396, 468
Eco47I GGWCC 3 cut(s) 649, 1046, 1076
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 1458
Eco81I CCTNAGG 1 cut(s) 1163
Eco88I CYCGRG 2 cut(s) 620, 881
EcoICRI GAGCTC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 2 cut(s) 649, 1076
EcoRII CCWGG 4 cut(s) 200, 504, 602, 645
EcoT14I CCWWGG 1 cut(s) 1049
EcoT38I GRGCYC 2 cut(s) 396, 468
ErhI CCWWGG 1 cut(s) 1049
Esp3I CGTCTC 1 cut(s) 604
FaeI CATG 7 cut(s) 307, 365, 833, 1053, 1124, 1195, 1396
FaqI GGGAC 2 cut(s) 698, 812
FatI CATG 7 cut(s) 303, 361, 829, 1049, 1120, 1191, 1392
FauI CCCGC 2 cut(s) 444, 937
FblI GTMKAC 1 cut(s) 1263
Fnu4HI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
FokI GGATG 4 cut(s) 74, 957, 999, 1363
FriOI GRGCYC 2 cut(s) 396, 468
Fsp4HI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
FspBI CTAG 2 cut(s) 572, 924
GlaI GCGC 2 cut(s) 311, 558
GluI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
GsuI CTGGAG 2 cut(s) 496, 1331
HaeII RGCGCY 2 cut(s) 313, 560
HaeIII GGCC 9 cut(s) 5, 280, 351, 491, 686, 969, 1037, 1168, 1226
HapII CCGG 7 cut(s) 174, 271, 297, 468, 683, 1038, 1217
HgaI GACGC 2 cut(s) 835, 1290
HhaI GCGC 2 cut(s) 312, 559
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 7 cut(s) 307, 365, 833, 1053, 1124, 1195, 1396
Hin6I GCGC 2 cut(s) 310, 557
HinP1I GCGC 2 cut(s) 310, 557
HincII GTYRAC 4 cut(s) 404, 850, 1264, 1358
HindII GTYRAC 4 cut(s) 404, 850, 1264, 1358
HindIII AAGCTT 1 cut(s) 987
HinfI GANTC 4 cut(s) 825, 872, 1105, 1354
HpaII CCGG 7 cut(s) 174, 271, 297, 468, 683, 1038, 1217
HphI GGTGA 3 cut(s) 76, 361, 1231
Hpy188I TCNGA 5 cut(s) 547, 997, 1029, 1239, 1293
Hpy188III TCNNGA 3 cut(s) 622, 1044, 1178
Hpy99I CGWCG 5 cut(s) 536, 1265, 1268, 1301, 1306
HpyAV CCTTC 9 cut(s) 178, 226, 452, 697, 1119, 1135, 1331, 1360, 1482
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 5 cut(s) 534, 658, 762, 801, 1296
HpyCH4V TGCA 3 cut(s) 57, 135, 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 468, 670
HpyF3I CTNAG 3 cut(s) 419, 794, 1163
HpySE526I ACGT 5 cut(s) 534, 658, 762, 801, 1296
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 7 cut(s) 307, 365, 833, 1053, 1124, 1195, 1396
HspAI GCGC 2 cut(s) 310, 557
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 3 cut(s) 307, 1054, 1294
Lsp1109I GCAGC 1 cut(s) 1069
MaeI CTAG 2 cut(s) 572, 924
MaeII ACGT 5 cut(s) 534, 658, 762, 801, 1296
MaeIII GTNAC 2 cut(s) 1061, 1463
MalI GATC 1 cut(s) 734
MbiI CCGCTC 1 cut(s) 335
MboI GATC 1 cut(s) 732
MhlI GDGCHC 2 cut(s) 396, 468
MluCI AATT 1 cut(s) 890
MlyI GAGTC 3 cut(s) 834, 1114, 1363
MmeI TCCRAC 2 cut(s) 247, 660
MseI TTAA 1 cut(s) 1245
MslI CAYNNNNRTG 1 cut(s) 1017
MspI CCGG 7 cut(s) 174, 271, 297, 468, 683, 1038, 1217
MspR9I CCNGG 8 cut(s) 202, 271, 297, 468, 506, 604, 647, 683
MvaI CCWGG 4 cut(s) 202, 506, 604, 647
MvnI CGCG 3 cut(s) 260, 1301, 1385
MwoI GCNNNNNNNGC 3 cut(s) 309, 468, 670
NciI CCSGG 4 cut(s) 271, 297, 468, 683
NcoI CCATGG 1 cut(s) 1049
NdeII GATC 1 cut(s) 732
NheI GCTAGC 2 cut(s) 571, 923
NlaIII CATG 7 cut(s) 307, 365, 833, 1053, 1124, 1195, 1396
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 3 cut(s) 217, 327, 1074
NspI RCATGY 1 cut(s) 1124
NspV TTCGAA 1 cut(s) 875
PaeR7I CTCGAG 1 cut(s) 620
PceI AGGCCT 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 759, 849
PfeI GAWTC 1 cut(s) 872
PfoI TCCNGGA 4 cut(s) 200, 269, 504, 645
PkrI GCNGC 5 cut(s) 190, 302, 581, 1059, 1170
PleI GAGTC 3 cut(s) 833, 1113, 1362
PpsI GAGTC 3 cut(s) 833, 1113, 1362
Ppu21I YACGTR 2 cut(s) 659, 763
PpuMI RGGWCCY 2 cut(s) 649, 1076
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 2 cut(s) 649, 1076
Psp6I CCWGG 4 cut(s) 200, 504, 602, 645
PspGI CCWGG 4 cut(s) 200, 504, 602, 645
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 279, 649, 1046, 1076
PspPPI RGGWCCY 2 cut(s) 649, 1076
PstNI CAGNNNCTG 2 cut(s) 505, 652
RsaI GTAC 4 cut(s) 540, 806, 1086, 1382
RsaNI GTAC 4 cut(s) 539, 805, 1085, 1381
RseI CAYNNNNRTG 1 cut(s) 1017
SacI GAGCTC 1 cut(s) 396
SalI GTCGAC 1 cut(s) 1262
SaqAI TTAA 1 cut(s) 1245
SatI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 4 cut(s) 279, 649, 1046, 1076
SchI GAGTC 3 cut(s) 834, 1114, 1363
ScrFI CCNGG 8 cut(s) 202, 271, 297, 468, 506, 604, 647, 683
SduI GDGCHC 2 cut(s) 396, 468
SfcI CTRYAG 2 cut(s) 675, 1481
Sfr274I CTCGAG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 875
SgrDI CGTCGACG 1 cut(s) 1262
SinI GGWCC 3 cut(s) 649, 1046, 1076
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 2 cut(s) 620, 1228
SmoI CTYRAG 2 cut(s) 620, 1228
Sse9I AATT 1 cut(s) 890
SseBI AGGCCT 1 cut(s) 491
SspMI CTAG 2 cut(s) 572, 924
SstI GAGCTC 1 cut(s) 396
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 8 cut(s) 200, 269, 295, 466, 504, 602, 645, 681
StyI CCWWGG 1 cut(s) 1049
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 5 cut(s) 537, 661, 765, 804, 1299
TaqI TCGA 5 cut(s) 531, 621, 875, 1263, 1343
TasI AATT 1 cut(s) 890
TatI WGTACW 1 cut(s) 1084
TauI GCSGC 4 cut(s) 191, 303, 582, 1171
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 1 cut(s) 1245
Tru9I TTAA 1 cut(s) 1245
TseI GCWGC 1 cut(s) 1057
TspDTI ATGAA 3 cut(s) 61, 350, 999
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 3 cut(s) 649, 1046, 1076
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 1 cut(s) 890
XceI RCATGY 1 cut(s) 1124
XhoI CTCGAG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 1263
XspI CTAG 2 cut(s) 572, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.