Rw0G019880

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00894
OG0000101
Physical Location & Seq
Reverse (-)
780 .. 1403
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019880.1

Sequence Viewer

Length: 624 bp
ATGAATGCAATGAAGTTGTATGATGATCTTGTCAACAAGACCACTGACAAGAAGATGCAAAAAGTCTTCCGCAAGTGGCGTACAGCCGGCGGTGGCCTTGCCAAGAAAGAGTCATTGGAGATGTTTGGTGCTTTGATAGATGATGGCTATGTAGACGAGGCTAACGAGCTTTTTAAGCGCATTTGTGAGACGGGTGTATATCCCATGGTCACAAATCACACCAGCGTTATTCAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCGGGGCATGTTAGCTTCAGGGGTTGCACCAAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTATTGACCCCAATTTCTGTGGAGATGCCAAGAAGTGCATTCTCGATATGATGGACAGGGGGATAAGGCCCAATCCTGCTACCTACACTGCAGTGATAGAGGGATTTGCGAAGCAGGAGGACGAGGCAGCCGAGGAGGAGGCCAAAGACTTGGTGGACGTAATGATGAGTAAGGGATTTGTGCCAAACGCAAAGGCTATGATGGAGGTTCTGAAGGGAAGGCCAACTCCTCTTATAAGAAGGGTCATAAACATTGTCCTTTCCAAGTTGAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

8.97

Isoelectric Point (pI)

21.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 64 - 156 1.4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 74 - 115 4e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AccI GTMKAC 1 cut(s) 153
AciI CCGC 2 cut(s) 70, 90
AcuI CTGAAG 2 cut(s) 279, 578
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 2 cut(s) 233, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 2 cut(s) 169, 293
AluI AGCT 2 cut(s) 169, 293
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 182
AoxI GGCC 4 cut(s) 94, 413, 486, 566
ApeKI GCWGC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 485
BccI CCATC 3 cut(s) 137, 391, 541
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
Bme1390I CCNGG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 45, 361
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 281
BsaJI CCNNGG 4 cut(s) 204, 258, 280, 477
Bse118I RCCGGY 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 4 cut(s) 204, 258, 280, 477
BseMI GCAATG 1 cut(s) 15
BseRI GAGGAG 3 cut(s) 494, 497, 564
BseXI GCAGC 1 cut(s) 485
BshFI GGCC 4 cut(s) 96, 415, 488, 568
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 2 cut(s) 87, 280
BslFI GGGAC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 182
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 2 cut(s) 10, 384
BsnI GGCC 4 cut(s) 96, 415, 488, 568
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 2 cut(s) 70, 90
BspANI GGCC 4 cut(s) 96, 415, 488, 568
BspMAI CTGCAG 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 204, 258, 280, 477
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 2 cut(s) 204, 258
Bst4CI ACNGT 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 175, 272
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 485
BstV2I GAAGAC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 496
BsuRI GGCC 4 cut(s) 96, 415, 488, 568
BtgI CCRYGG 1 cut(s) 204
BtsI GCAGTG 2 cut(s) 432, 444
BtsIMutI CAGTG 4 cut(s) 42, 324, 432, 444
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 1 cut(s) 81
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 2 cut(s) 205, 286
CviQI GTAC 1 cut(s) 81
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 204, 258
Eco57I CTGAAG 2 cut(s) 279, 578
EcoT14I CCWWGG 2 cut(s) 204, 258
ErhI CCWWGG 2 cut(s) 204, 258
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 2 cut(s) 208, 289
FaqI GGGAC 1 cut(s) 354
FatI CATG 2 cut(s) 204, 285
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 474
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 4 cut(s) 96, 415, 488, 568
HapII CCGG 2 cut(s) 87, 280
HhaI GCGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 208, 289
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 110, 342
HpaII CCGG 2 cut(s) 87, 280
Hpy166II GTNNAC 3 cut(s) 34, 154, 502
Hpy188I TCNGA 1 cut(s) 558
Hpy188III TCNNGA 2 cut(s) 269, 389
Hpy8I GTNNAC 3 cut(s) 34, 154, 502
HpyAV CCTTC 4 cut(s) 553, 558, 579, 610
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 5 cut(s) 8, 58, 305, 384, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 272
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 2 cut(s) 208, 289
HspAI GCGC 1 cut(s) 178
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 100, 235, 254, 282, 293, 388, 435, 446
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 2 cut(s) 45, 361
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 58, 64
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 358
MlyI GAGTC 2 cut(s) 119, 336
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 2 cut(s) 174, 332
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 2 cut(s) 87, 280
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 2 cut(s) 10, 384
MwoI GCNNNNNNNGC 2 cut(s) 175, 272
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 281
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 208, 289
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 437
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 474
PctI GAATGC 2 cut(s) 10, 384
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 475
PleI GAGTC 2 cut(s) 118, 336
PpsI GAGTC 2 cut(s) 118, 336
PsiI TTATAA 1 cut(s) 581
PspPI GGNCC 1 cut(s) 414
PstI CTGCAG 1 cut(s) 439
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 2 cut(s) 174, 332
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 2 cut(s) 119, 336
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 171, 243, 295, 431, 507, 555
SfaNI GCATC 2 cut(s) 45, 361
SfcI CTRYAG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 358
SsiI CCGC 2 cut(s) 70, 90
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 204, 258
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 390
TasI AATT 1 cut(s) 358
Tru1I TTAA 2 cut(s) 174, 332
Tru9I TTAA 2 cut(s) 174, 332
TscAI CASTG 4 cut(s) 49, 331, 439, 444
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 17, 26
TspRI CASTG 4 cut(s) 49, 331, 439, 444
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 496
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.