Rmu_sc0040213.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040213.1
OG0000101
Physical Location & Seq
Forward (+)
1 .. 725
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040213.1_g000001.1.cds

Sequence Viewer

Length: 675 bp
ggggttccttgagttgataaagactaaggtgtttgtgcctgaatgtgttaattttgagaaagaaaacctggaggatgtgatcaaggcaatgaagttgcatcattatcttgagaagacggctgatgaggacatgcaaagagtcttacatgacaggcacatccaaggcacccagaaacaggcagacaacatgtacaaggctttacttgatgatggaaatagacacgaggcgtggattctctttcagaagcagtaccatgagtcgagtgtgcaccacatggttgtcctgtatacctgtgttattgaaaccttcatcaatgctggcaagaccaagggtgctctggaggtgtaccagcgcatgttggatgatgggtattccccgtgctcctacacttactcaattttgatcaaggcacttgctgctgaccccagcttcttcgaagatgcaaagaaatactttcttgagatgatggagaaaggaatgcggcccaatgctgctatctacactgcagtgttagggggtttgcgaggcaggatgacaatacagctggggaggaaggaaaaaaaagtttgtgaaggtgatgatgggcaaggggtttgtgccttacgtcgaggatgtaaggaaggttctaagggggaaaccagcacctgtagttacaatggtcatggacatcatct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

6.89

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 482
AfaI GTAC 3 cut(s) 192, 252, 348
AfiI CCNNNNNNNGG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 1 cut(s) 303
AjnI CCWGG 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 507
AluBI AGCT 2 cut(s) 430, 545
AluI AGCT 2 cut(s) 430, 545
Alw21I GWGCWC 3 cut(s) 271, 338, 384
Alw44I GTGCAC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 646
AoxI GGCC 1 cut(s) 483
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 417, 492
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 484
AsuHPI GGTGA 1 cut(s) 588
AsuII TTCGAA 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 165
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 3 cut(s) 271, 338, 384
BbvI GCAGC 2 cut(s) 404, 479
BccI CCATC 4 cut(s) 204, 360, 461, 576
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 2 cut(s) 79, 403
BfmI CTRYAG 2 cut(s) 505, 647
BisI GCNGC 3 cut(s) 418, 483, 493
BlsI GCNGC 3 cut(s) 419, 484, 494
Bme1390I CCNGG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 6, 167
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 107, 431
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 2 cut(s) 90, 360
Bpu14I TTCGAA 1 cut(s) 436
BpuEI CTTGAG 3 cut(s) 30, 129, 480
BsaJI CCNNGG 2 cut(s) 161, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 161, 328
BseGI GGATG 5 cut(s) 80, 157, 368, 538, 618
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 2 cut(s) 404, 479
BseYI CCCAGC 2 cut(s) 426, 545
BshFI GGCC 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 165
BsiHKAI GWGCWC 3 cut(s) 271, 338, 384
BslI CCNNNNNNNGG 1 cut(s) 176
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 436
Bsp1286I GDGCHC 3 cut(s) 271, 338, 384
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 79, 403
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 485
BspLI GGNNCC 2 cut(s) 6, 167
BspMAI CTGCAG 1 cut(s) 509
BspT104I TTCGAA 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 94
BsrGI TGTACA 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 161, 328
BssMI GATC 2 cut(s) 79, 403
BssNAI GTATAC 1 cut(s) 289
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 161, 328
Bst1107I GTATAC 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 417
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 25, 628
BstF5I GGATG 5 cut(s) 80, 157, 368, 538, 618
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 82, 406
BstMBI GATC 2 cut(s) 79, 403
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 3 cut(s) 134, 191, 359
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 2 cut(s) 505, 647
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 404, 479
BstV2I GAAGAC 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 5 cut(s) 80, 157, 368, 538, 618
BtsI GCAGTG 2 cut(s) 502, 514
BtsIMutI CAGTG 2 cut(s) 502, 514
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 646
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 191, 251, 347
CviAII CATG 7 cut(s) 131, 147, 188, 255, 275, 356, 663
CviJI RGCY 5 cut(s) 120, 198, 430, 485, 545
CviKI_1 RGCY 5 cut(s) 120, 198, 430, 485, 545
CviQI GTAC 3 cut(s) 191, 251, 347
DdeI CTNAG 2 cut(s) 25, 628
DpnI GATC 2 cut(s) 81, 405
DpnII GATC 2 cut(s) 79, 403
Eco130I CCWWGG 2 cut(s) 161, 328
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 161, 328
ErhI CCWWGG 2 cut(s) 161, 328
FaeI CATG 7 cut(s) 134, 150, 191, 258, 278, 359, 666
FaiI YATR 8 cut(s) 132, 148, 189, 256, 276, 289, 357, 664
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 7 cut(s) 130, 146, 187, 254, 274, 355, 662
FbaI TGATCA 2 cut(s) 79, 403
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 418, 483, 493
FokI GGATG 5 cut(s) 87, 144, 375, 545, 625
Fsp4HI GCNGC 3 cut(s) 418, 483, 493
GlaI GCGC 1 cut(s) 354
GluI GCNGC 3 cut(s) 418, 483, 493
GsaI CCCAGC 2 cut(s) 430, 549
GsuI CTGGAG 2 cut(s) 90, 360
HaeIII GGCC 1 cut(s) 485
HhaI GCGC 1 cut(s) 355
Hin1II CATG 7 cut(s) 134, 150, 191, 258, 278, 359, 666
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 3 cut(s) 139, 233, 258
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 3 cut(s) 269, 289, 347
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 108, 339, 459
Hpy8I GTNNAC 3 cut(s) 269, 289, 347
Hpy99I CGWCG 1 cut(s) 610
HpyAV CCTTC 4 cut(s) 317, 548, 567, 615
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 5 cut(s) 98, 134, 269, 444, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpyF3I CTNAG 2 cut(s) 25, 628
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 7 cut(s) 134, 150, 191, 258, 278, 359, 666
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 2 cut(s) 79, 403
Kzo9I GATC 2 cut(s) 79, 403
LmnI GCTCC 1 cut(s) 387
Lsp1109I GCAGC 2 cut(s) 404, 479
LweI GCATC 2 cut(s) 107, 431
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 651
MalI GATC 2 cut(s) 81, 405
MboI GATC 2 cut(s) 79, 403
MboII GAAGA 3 cut(s) 125, 425, 450
MhlI GDGCHC 3 cut(s) 271, 338, 384
MluCI AATT 2 cut(s) 50, 397
MlyI GAGTC 2 cut(s) 148, 267
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 7 cut(s) 65, 119, 218, 335, 519, 544, 603
MseI TTAA 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 417
NdeII GATC 2 cut(s) 79, 403
NlaIII CATG 7 cut(s) 134, 150, 191, 258, 278, 359, 666
NlaIV GGNNCC 2 cut(s) 6, 167
NspI RCATGY 3 cut(s) 134, 191, 359
NspV TTCGAA 1 cut(s) 436
OliI CACNNNNGTG 1 cut(s) 507
PciI ACATGT 1 cut(s) 187
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 419, 484, 494
PleI GAGTC 2 cut(s) 147, 266
PpsI GAGTC 2 cut(s) 147, 266
PscI ACATGT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 2 cut(s) 426, 545
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 6, 167
PspPI GGNCC 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 608, 640
PstI CTGCAG 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 3 cut(s) 192, 252, 348
RsaNI GTAC 3 cut(s) 191, 251, 347
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 1 cut(s) 49
SatI GCNGC 3 cut(s) 418, 483, 493
Sau3AI GATC 2 cut(s) 79, 403
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 2 cut(s) 148, 267
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 3 cut(s) 271, 338, 384
SfaNI GCATC 2 cut(s) 107, 431
SfcI CTRYAG 2 cut(s) 505, 647
SfuI TTCGAA 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 3 cut(s) 9, 108, 459
SmoI CTYRAG 3 cut(s) 9, 108, 459
Sse9I AATT 2 cut(s) 50, 397
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 161, 328
TaiI ACGT 1 cut(s) 608
TaqI TCGA 3 cut(s) 261, 436, 608
TasI AATT 2 cut(s) 50, 397
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 49
Tru9I TTAA 1 cut(s) 49
TscAI CASTG 2 cut(s) 509, 514
TseI GCWGC 2 cut(s) 417, 492
TspDTI ATGAA 2 cut(s) 105, 299
TspRI CASTG 2 cut(s) 509, 514
VneI GTGCAC 1 cut(s) 267
XceI RCATGY 3 cut(s) 134, 191, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.