Rmu_sc0008183.1_g000020

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008183.1
OG0000101
Physical Location & Seq
Forward (+)
74667 .. 75569
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008183.1_g000020.1.cds

Sequence Viewer

Length: 903 bp
atggcggagactgaagtcaagtccaattcttgtgcggatgacctcgagaaacatgtaatgaaggttttcaaggaggccaccaaagactgtgaggacaaggaagtgaaagaaatatttgacatgattaggaactatgacgaccttaacaagtatgcaatttcggtgttcaattccatggcaaatgacaagcttattgaggaagctactttaagcctcgctctgagtctgtgtcgacggcacatgatagccagcggtgtcgcccccacctcctgcactttcactacactcatcaacacacttgcaaaaaactcatcttctgatgtcagttttgttgggtatgccaagaagtattttttggaaatgttggataaggggatgaagccttatcacacctcctacatggccgtgttcaaatccatcgcttgccgtgagtcggtggagaaggtcatggagttctctcagcagatacaagcaagggggttcatccctcaccccaatgttccttgttttggagaagccaacctcacagaagcaatcaatgcaatgaagttgcttgatgatctcgtcaacaagaccactgacaaggagatgcaaaaagtcttccgcaattggcacctcacccacctcaagaaatacggggcgaagatgttttatgctttgatagcggatgccaatgcaagcctggtcagggagctctgcgagcaaaattctgagacgggtatatatcccactgtcatgcttcacacttttgttattgaagactacctcaaggctggcaagactaagggtgctctggaggcgtacagggacatgctagcttctggggttgccccaaactcctacacttatcgagttttaatcaagggactcgctgctgacccccactttgttgaagatgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

300

Amino Acids

33.78

Weight (kDa)

6.09

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 232
AciI CCGC 5 cut(s) 5, 35, 252, 604, 665
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 3 cut(s) 433, 509, 688
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 5 cut(s) 70, 169, 412, 758, 893
AjnI CCWGG 1 cut(s) 681
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 4 cut(s) 190, 203, 694, 818
AluI AGCT 4 cut(s) 190, 203, 694, 818
Alw21I GWGCWC 2 cut(s) 696, 793
Alw26I GTCTC 2 cut(s) 2, 707
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 2 cut(s) 75, 402
ApeKI GCWGC 1 cut(s) 872
ApoI RAATTY 1 cut(s) 706
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 482, 610
AsuNHI GCTAGC 1 cut(s) 814
AvaI CYCGRG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 2 cut(s) 592, 765
Bbv12I GWGCWC 2 cut(s) 696, 793
BbvI GCAGC 1 cut(s) 859
BccI CCATC 1 cut(s) 425
BceAI ACGGC 3 cut(s) 251, 389, 411
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 2, 707
BfaI CTAG 2 cut(s) 815, 901
BisI GCNGC 1 cut(s) 873
BlsI GCNGC 1 cut(s) 874
Bme1390I CCNGG 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 614
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 3 cut(s) 579, 658, 886
BmtI GCTAGC 1 cut(s) 818
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 592, 765
BpmI CTGGAG 1 cut(s) 815
BpuEI CTTGAG 2 cut(s) 611, 752
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 509, 688
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 4 cut(s) 43, 381, 483, 673
BseLI CCNNNNNNNGG 3 cut(s) 433, 509, 688
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 3 cut(s) 212, 473, 702
BseXI GCAGC 1 cut(s) 859
BsgI GTGCAG 1 cut(s) 256
BshFI GGCC 2 cut(s) 77, 404
BshNI GGYRCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 696, 793
BsiHKCI CYCGRG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 821, 879
BslI CCNNNNNNNGG 3 cut(s) 433, 509, 688
BsmAI GTCTC 2 cut(s) 2, 707
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 2 cut(s) 821, 879
BsnI GGCC 2 cut(s) 77, 404
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 696, 793
Bsp143I GATC 1 cut(s) 559
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 5 cut(s) 5, 35, 252, 604, 665
BspANI GGCC 2 cut(s) 77, 404
BspCNI CTCAG 3 cut(s) 213, 472, 703
BspLI GGNNCC 1 cut(s) 614
BspOI GCTAGC 1 cut(s) 818
BspT107I GGYRCC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 89, 733
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 6 cut(s) 250, 424, 679, 701, 775, 816
BstDEI CTNAG 4 cut(s) 221, 459, 711, 783
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 4 cut(s) 43, 381, 483, 673
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 2, 707
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 4 cut(s) 539, 662, 700, 797
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 2 cut(s) 56, 814
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 681
BstV1I GCAGC 1 cut(s) 859
BstV2I GAAGAC 2 cut(s) 592, 765
BsuRI GGCC 2 cut(s) 77, 404
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 4 cut(s) 43, 381, 483, 673
BtsIMutI CAGTG 2 cut(s) 576, 729
Cac8I GCNNGC 6 cut(s) 250, 424, 679, 701, 775, 816
Csp6I GTAC 1 cut(s) 802
CviAII CATG 8 cut(s) 53, 121, 175, 241, 400, 448, 736, 811
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 4 cut(s) 221, 459, 711, 783
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 402
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 696
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 8 cut(s) 56, 124, 178, 244, 403, 451, 739, 814
FaqI GGGAC 2 cut(s) 821, 879
FatI CATG 8 cut(s) 52, 120, 174, 240, 399, 447, 735, 810
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 873
FokI GGATG 4 cut(s) 50, 388, 470, 680
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 873
FspBI CTAG 2 cut(s) 815, 901
GluI GCNGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 815
HaeIII GGCC 2 cut(s) 77, 404
Hin1II CATG 8 cut(s) 56, 124, 178, 244, 403, 451, 739, 814
HincII GTYRAC 2 cut(s) 233, 568
HindII GTYRAC 2 cut(s) 233, 568
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 3 cut(s) 223, 431, 867
HphI GGTGA 2 cut(s) 482, 610
Hpy166II GTNNAC 2 cut(s) 233, 568
Hpy188I TCNGA 3 cut(s) 222, 319, 712
Hpy188III TCNNGA 3 cut(s) 46, 628, 794
Hpy8I GTNNAC 2 cut(s) 233, 568
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 55, 436
HpyCH4III ACNGT 2 cut(s) 89, 733
HpyCH4V TGCA 6 cut(s) 155, 273, 302, 542, 592, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 662, 700, 797
HpyF3I CTNAG 4 cut(s) 221, 459, 711, 783
Hsp92II CATG 8 cut(s) 56, 124, 178, 244, 403, 451, 739, 814
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 9 cut(s) 262, 283, 668, 673, 695, 759, 779, 790, 807
Lsp1109I GCAGC 1 cut(s) 859
LweI GCATC 3 cut(s) 579, 658, 886
MaeI CTAG 2 cut(s) 815, 901
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 4 cut(s) 306, 592, 655, 770
MfeI CAATTG 1 cut(s) 607
MhlI GDGCHC 2 cut(s) 696, 793
MluCI AATT 5 cut(s) 25, 156, 169, 607, 706
MlyI GAGTC 3 cut(s) 232, 440, 861
MmeI TCCRAC 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 3 cut(s) 144, 209, 857
MslI CAYNNNNRTG 3 cut(s) 404, 495, 734
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 683
MunI CAATTG 1 cut(s) 607
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 4 cut(s) 539, 662, 700, 797
NcoI CCATGG 1 cut(s) 174
NdeII GATC 1 cut(s) 559
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 8 cut(s) 56, 124, 178, 244, 403, 451, 739, 814
NlaIV GGNNCC 1 cut(s) 614
NspI RCATGY 2 cut(s) 56, 814
PaeR7I CTCGAG 1 cut(s) 44
PciI ACATGT 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 874
PleI GAGTC 3 cut(s) 231, 439, 861
PpsI GAGTC 3 cut(s) 231, 439, 861
PscI ACATGT 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 614
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 3 cut(s) 404, 495, 734
SacI GAGCTC 1 cut(s) 696
SalI GTCGAC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 144, 209, 857
SatI GCNGC 1 cut(s) 873
Sau3AI GATC 1 cut(s) 559
SchI GAGTC 3 cut(s) 232, 440, 861
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 2 cut(s) 696, 793
SfaNI GCATC 3 cut(s) 579, 658, 886
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 404, 495, 734
SmlI CTYRAG 3 cut(s) 44, 626, 767
SmoI CTYRAG 3 cut(s) 44, 626, 767
Sse9I AATT 5 cut(s) 25, 156, 169, 607, 706
SsiI CCGC 5 cut(s) 5, 35, 252, 604, 665
SspI AATATT 1 cut(s) 114
SspMI CTAG 2 cut(s) 815, 901
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 89, 733
TaqI TCGA 3 cut(s) 45, 232, 850
TasI AATT 5 cut(s) 25, 156, 169, 607, 706
Tru1I TTAA 3 cut(s) 144, 209, 857
Tru9I TTAA 3 cut(s) 144, 209, 857
TscAI CASTG 2 cut(s) 583, 736
TseI GCWGC 1 cut(s) 872
TspDTI ATGAA 4 cut(s) 74, 392, 472, 560
TspRI CASTG 2 cut(s) 583, 736
XapI RAATTY 1 cut(s) 706
XceI RCATGY 2 cut(s) 56, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 815, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.