Rorug07G0007900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Reverse (-)
664221 .. 669365
5145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0007900.1

Sequence Viewer

Length: 1446 bp
ATGAGCTGTGTGAGAACAGCAGGGACGGAGAGGATATTATTAGAGCCTGGAATCCCTTTGTTTGATGCTAAGAACAGCAATAGACCTAAATTAAACCGACGACTAGGGTTCAGAGCAGGAGCAGCAGCAGGAGCAGGAGCGGAATTCGAATTCTATTCATCGACTCCGGCATCCGCATCGGCATCGGCATCGGCATTGCTGCGAGTTAGGAGGAGGAGGACAACCGGAGGAGGCTTCCGAACGAGACACGTGGAAATTTCCATTATGGCGACTGCGTCCCCGCCGTCTCTGCTTTTGACTTCCGGCGCCAGCGGCCGCATAAGCGCCTTGTTCTCGCTCCGAGCAATGCGGAGTCTGATGATGCTGATCAACGCCTTCTTCCTGCTCCTCCTGCTGCCTTTCCGCGGCCGCAAGCCGTTGTCCTCGTCCGAGAAATTGTCCGAGGACGAGAATAAGCAGAGAGGGCCGGTGGTGCGCGTGCCGGCTACCATCGTGCACTGGAAGAGCAGCAGCAACAGCTCGCCGCCGCCCGTCGATCATGACGTGGCGGCCAGGAGAGCGTTGGCGAAGCTGAGAGTCAGACAGGACGACGATCCGGATTCGGTCAGGCAATTTTCGATTTTCGCCACCACCCGAGGGGAAACTCTTTTCACCCAAACCTGGACTCCCGTTTCGGTTAACATCAGGGGTGTTGTCATTCTTATGCACGGCCTGAATGAACACAGTGGCAGATACAGTGGTTTTGCAAAGCAGCTGAATGCTAATGGTTTCAAGGTTTATGGAATGGATTGGATTGGTCATGGTGGGAGTGATGGGCTTCATGCGTATGTTCCTTCTCTCGATTTTGCTGTTGCTGATATGAAATCATATATTGAAAAGGTTGTAGCCGAAAATCCTGGCTTACCTTGTTTTTGTTTTGGACACTCCACAGGTGCAGCCATTATCCTTAAGGCAATGCTTGACCCAAAAGTTGAGGCCTGCATAGATGGTGTGGTGCTTACATCACCTGCAGTTGGGGTTCAGCCTTCGCACCCAATATTTGTGATACTTGCTCCAGTCTTTGCATTTTTGATGCCGAGATATCAACTCAGTGCGGCAAATAAGACAGGCATTGCAGTTTCTCGGGACCCTGCAGCGCTGGCTGCCAAGTATTCAGACCCCCTAGTGTACACTGGAGCCATCCGTGTGAGGACTGGTTATGAAATTCTTCGAATCACATCCTACTTGCAGCAGAATCTTAGCAAGATGAAAGTCCCCTTTCTGGTTCTCCATGGCACAGCTGACACTGTTACTGATCCTGGGGCCACACAGAAACTGTACGACGAAGCCTCCTCAACTGACAAAACCATCACATTGTATGATGGGTTGTTACATGACCTCCTCTTTGAACCAGAACGAGAAGCTATTTCGAAGCAAATAATAGATTGGTTGATTCATAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

481

Amino Acids

52.37

Weight (kDa)

9.63

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 228 - 465 1.4e-76 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 231 - 359 4.6e-13 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 232 - 458 1.2e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 140
AccII CGCG 2 cut(s) 405, 477
AccIII TCCGGA 1 cut(s) 595
AclWI GGATC 2 cut(s) 587, 1289
AcoI YGGCCR 3 cut(s) 313, 406, 549
AcsI RAATTY 4 cut(s) 143, 149, 255, 1203
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 1169, 1319
AfeI AGCGCT 1 cut(s) 1137
AfiI CCNNNNNNNGG 5 cut(s) 404, 636, 660, 1013, 1261
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 3 cut(s) 772, 875, 1388
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 5 cut(s) 46, 551, 659, 895, 1297
AluBI AGCT 6 cut(s) 6, 519, 571, 754, 1280, 1403
AluI AGCT 6 cut(s) 6, 519, 571, 754, 1280, 1403
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 2 cut(s) 238, 291
Alw44I GTGCAC 1 cut(s) 494
AlwI GGATC 2 cut(s) 587, 1289
AlwNI CAGNNNCTG 1 cut(s) 1315
Ama87I CYCGRG 2 cut(s) 633, 1122
Aor13HI TCCGGA 1 cut(s) 595
Aor51HI AGCGCT 1 cut(s) 1137
AoxI GGCC 7 cut(s) 313, 406, 464, 549, 709, 975, 1302
ApaLI GTGCAC 1 cut(s) 494
ApoI RAATTY 4 cut(s) 143, 149, 255, 1203
ArsI GACNNNNNNTTYG 4 cut(s) 655, 687, 1367, 1399
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 4 cut(s) 308, 326, 477, 1138
AspS9I GGNCC 3 cut(s) 464, 1126, 1302
AsuHPI GGTGA 2 cut(s) 643, 996
AsuII TTCGAA 3 cut(s) 147, 1210, 1409
AvaI CYCGRG 2 cut(s) 633, 1122
AvaII GGWCC 1 cut(s) 1126
BaeGI GKGCMC 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 724, 757
BanI GGYRCC 1 cut(s) 305
BbrPI CACGTG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 498
BccI CCATC 6 cut(s) 497, 806, 980, 1187, 1355, 1355
BceAI ACGGC 3 cut(s) 268, 400, 724
BcgI CGANNNNNNTGC 6 cut(s) 159, 165, 171, 193, 199, 205
BciT130I CCWGG 5 cut(s) 48, 553, 661, 897, 1299
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 238, 291
BfaI CTAG 2 cut(s) 104, 1163
BfmI CTRYAG 2 cut(s) 1008, 1131
BfoI RGCGCY 3 cut(s) 309, 327, 1139
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 1015
Bme1390I CCNGG 5 cut(s) 48, 553, 661, 897, 1299
Bme18I GGWCC 1 cut(s) 1126
BmeT110I CYCGRG 2 cut(s) 633, 1122
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 3 cut(s) 464, 1126, 1302
BmiI GGNNCC 5 cut(s) 307, 1127, 1128, 1177, 1303
BmrFI CCNGG 5 cut(s) 48, 553, 661, 897, 1299
BmsI GCATC 7 cut(s) 55, 179, 185, 191, 197, 351, 1062
BpmI CTGGAG 2 cut(s) 1038, 1194
Bpu14I TTCGAA 3 cut(s) 147, 1210, 1409
BsaAI YACGTR 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 403, 441, 634, 1270, 1298
BsaWI WCCGGW 2 cut(s) 224, 595
BsaXI ACNNNNNCTCC 6 cut(s) 649, 679, 1313, 1343, 1362, 1392
Bsc4I CCNNNNNNNGG 5 cut(s) 404, 636, 660, 1013, 1261
Bse118I RCCGGY 2 cut(s) 466, 481
Bse1I ACTGG 4 cut(s) 503, 1055, 1177, 1198
Bse3DI GCAATG 4 cut(s) 194, 351, 960, 1110
Bse8I GATNNNNATC 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 5 cut(s) 48, 553, 661, 897, 1299
BseDI CCNNGG 5 cut(s) 403, 441, 634, 1270, 1298
BseGI GGATG 3 cut(s) 170, 1179, 1217
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 5 cut(s) 404, 636, 660, 1013, 1261
BseMI GCAATG 4 cut(s) 194, 351, 960, 1110
BseMII CTCAG 2 cut(s) 563, 1102
BseNI ACTGG 4 cut(s) 503, 1055, 1177, 1198
BseRI GAGGAG 6 cut(s) 226, 229, 243, 377, 1321, 1370
BseSI GKGCMC 1 cut(s) 498
BseX3I CGGCCG 2 cut(s) 313, 406
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 2 cut(s) 405, 477
Bsh1285I CGRYCG 2 cut(s) 316, 409
BshFI GGCC 7 cut(s) 315, 408, 466, 551, 711, 977, 1304
BshNI GGYRCC 1 cut(s) 305
BsiEI CGRYCG 2 cut(s) 316, 409
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 633, 1122
BsiSI CCGG 6 cut(s) 167, 225, 303, 467, 482, 596
BslFI GGGAC 4 cut(s) 37, 262, 1139, 1238
BslI CCNNNNNNNGG 5 cut(s) 404, 636, 660, 1013, 1261
BsmAI GTCTC 2 cut(s) 238, 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 4 cut(s) 37, 262, 1139, 1238
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 7 cut(s) 315, 408, 466, 551, 711, 977, 1304
BsoBI CYCGRG 2 cut(s) 633, 1122
Bsp119I TTCGAA 3 cut(s) 147, 1210, 1409
Bsp1286I GDGCHC 1 cut(s) 498
Bsp13I TCCGGA 1 cut(s) 595
Bsp1407I TGTACA 1 cut(s) 1167
Bsp143I GATC 4 cut(s) 366, 535, 592, 1294
Bsp19I CCATGG 1 cut(s) 1270
BspANI GGCC 7 cut(s) 315, 408, 466, 551, 711, 977, 1304
BspCNI CTCAG 2 cut(s) 564, 1101
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 2 cut(s) 405, 477
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 5 cut(s) 307, 1127, 1128, 1177, 1303
BspMAI CTGCAG 2 cut(s) 1012, 1135
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 2 cut(s) 587, 1289
BspQI GCTCTTC 1 cut(s) 497
BspT104I TTCGAA 3 cut(s) 147, 1210, 1409
BspT107I GGYRCC 1 cut(s) 305
BspTI CTTAAG 1 cut(s) 947
BsrBI CCGCTC 1 cut(s) 140
BsrDI GCAATG 4 cut(s) 194, 351, 960, 1110
BsrFI RCCGGY 2 cut(s) 466, 481
BsrGI TGTACA 1 cut(s) 1167
BsrI ACTGG 4 cut(s) 503, 1055, 1177, 1198
BssAI RCCGGY 2 cut(s) 466, 481
BssECI CCNNGG 5 cut(s) 403, 441, 634, 1270, 1298
BssMI GATC 4 cut(s) 366, 535, 592, 1294
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 1270
Bst2UI CCWGG 5 cut(s) 48, 553, 661, 897, 1299
Bst4CI ACNGT 4 cut(s) 725, 737, 1288, 1317
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 306
BstAFI CTTAAG 1 cut(s) 947
BstAUI TGTACA 1 cut(s) 1167
BstBAI YACGTR 1 cut(s) 250
BstBI TTCGAA 3 cut(s) 147, 1210, 1409
BstC8I GCNNGC 7 cut(s) 310, 413, 479, 483, 521, 979, 1140
BstDEI CTNAG 4 cut(s) 69, 572, 1088, 1238
BstDSI CCRYGG 2 cut(s) 403, 1270
BstF5I GGATG 3 cut(s) 170, 1179, 1217
BstFNI CGCG 2 cut(s) 405, 477
BstH2I RGCGCY 3 cut(s) 309, 327, 1139
BstHHI GCGC 4 cut(s) 308, 326, 477, 1138
BstKTI GATC 4 cut(s) 369, 538, 595, 1297
BstMAI GTCTC 2 cut(s) 238, 291
BstMBI GATC 4 cut(s) 366, 535, 592, 1294
BstMCI CGRYCG 2 cut(s) 316, 409
BstNI CCWGG 5 cut(s) 48, 553, 661, 897, 1299
BstSCI CCNGG 5 cut(s) 46, 551, 659, 895, 1297
BstSFI CTRYAG 2 cut(s) 1008, 1131
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 2 cut(s) 405, 477
BstZI CGGCCG 2 cut(s) 313, 406
BsuRI GGCC 7 cut(s) 315, 408, 466, 551, 711, 977, 1304
BtgI CCRYGG 2 cut(s) 403, 1270
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 3 cut(s) 170, 1179, 1217
BtsIMutI CAGTG 6 cut(s) 496, 730, 742, 1096, 1170, 1284
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 7 cut(s) 310, 413, 479, 483, 521, 979, 1140
CaiI CAGNNNCTG 1 cut(s) 1315
CciI TCATGA 1 cut(s) 538
CciNI GCGGCCGC 2 cut(s) 313, 406
CfoI GCGC 4 cut(s) 308, 326, 477, 1138
Cfr10I RCCGGY 2 cut(s) 466, 481
Cfr13I GGNCC 3 cut(s) 464, 1126, 1302
Cfr42I CCGCGG 1 cut(s) 406
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 1168, 1318
CviAII CATG 5 cut(s) 539, 800, 821, 1271, 1373
CviQI GTAC 2 cut(s) 1168, 1318
DdeI CTNAG 4 cut(s) 69, 572, 1088, 1238
DinI GGCGCC 1 cut(s) 307
DpnI GATC 4 cut(s) 368, 537, 594, 1296
DpnII GATC 4 cut(s) 366, 535, 592, 1294
EaeI YGGCCR 3 cut(s) 313, 406, 549
EagI CGGCCG 2 cut(s) 313, 406
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
EclXI CGGCCG 2 cut(s) 313, 406
Eco130I CCWWGG 1 cut(s) 1270
Eco147I AGGCCT 1 cut(s) 977
Eco32I GATATC 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 1126
Eco47III AGCGCT 1 cut(s) 1137
Eco52I CGGCCG 2 cut(s) 313, 406
Eco72I CACGTG 1 cut(s) 250
Eco88I CYCGRG 2 cut(s) 633, 1122
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRI GAATTC 2 cut(s) 143, 149
EcoRII CCWGG 5 cut(s) 46, 551, 659, 895, 1297
EcoRV GATATC 1 cut(s) 1082
EcoT14I CCWWGG 1 cut(s) 1270
EgeI GGCGCC 1 cut(s) 307
EheI GGCGCC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 1270
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 5 cut(s) 542, 803, 824, 1274, 1376
FaqI GGGAC 4 cut(s) 37, 262, 1139, 1238
FatI CATG 5 cut(s) 538, 799, 820, 1270, 1372
FauI CCCGC 1 cut(s) 288
FbaI TGATCA 1 cut(s) 366
FokI GGATG 3 cut(s) 157, 1166, 1204
FspBI CTAG 2 cut(s) 104, 1163
GlaI GCGC 4 cut(s) 307, 325, 476, 1137
GsuI CTGGAG 2 cut(s) 1038, 1194
HaeII RGCGCY 3 cut(s) 309, 327, 1139
HaeIII GGCC 7 cut(s) 315, 408, 466, 551, 711, 977, 1304
HapII CCGG 6 cut(s) 167, 225, 303, 467, 482, 596
HgaI GACGC 1 cut(s) 264
HhaI GCGC 4 cut(s) 308, 326, 477, 1138
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 5 cut(s) 542, 803, 824, 1274, 1376
Hin6I GCGC 4 cut(s) 306, 324, 475, 1136
HinP1I GCGC 4 cut(s) 306, 324, 475, 1136
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 9 cut(s) 51, 163, 352, 576, 599, 664, 1212, 1234, 1432
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 6 cut(s) 167, 225, 303, 467, 482, 596
HphI GGTGA 2 cut(s) 643, 996
Hpy166II GTNNAC 4 cut(s) 496, 679, 1168, 1170
Hpy188I TCNGA 8 cut(s) 113, 239, 341, 357, 430, 442, 581, 1156
Hpy188III TCNNGA 4 cut(s) 539, 596, 839, 1124
Hpy8I GTNNAC 4 cut(s) 496, 679, 1168, 1170
Hpy99I CGWCG 4 cut(s) 102, 536, 593, 1325
HpyAV CCTTC 3 cut(s) 385, 843, 1035
HpyCH4III ACNGT 4 cut(s) 725, 737, 1288, 1317
HpyCH4IV ACGT 2 cut(s) 249, 543
HpyF3I CTNAG 4 cut(s) 69, 572, 1088, 1238
HpySE526I ACGT 2 cut(s) 249, 543
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 5 cut(s) 542, 803, 824, 1274, 1376
HspAI GCGC 4 cut(s) 306, 324, 475, 1136
KasI GGCGCC 1 cut(s) 305
KflI GGGWCCC 1 cut(s) 1126
Kpn2I TCCGGA 1 cut(s) 595
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 366
KspAI GTTAAC 1 cut(s) 679
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 366, 535, 592, 1294
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 7 cut(s) 119, 131, 137, 342, 390, 1057, 1175
LweI GCATC 7 cut(s) 55, 179, 185, 191, 197, 351, 1062
MaeI CTAG 2 cut(s) 104, 1163
MaeII ACGT 2 cut(s) 249, 543
MaeIII GTNAC 2 cut(s) 1288, 1368
MalI GATC 4 cut(s) 368, 537, 594, 1296
MbiI CCGCTC 1 cut(s) 140
MboI GATC 4 cut(s) 366, 535, 592, 1294
MboII GAAGA 3 cut(s) 370, 514, 1199
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 7 cut(s) 89, 143, 149, 255, 434, 611, 1203
Mly113I GGCGCC 1 cut(s) 306
MlyI GAGTC 4 cut(s) 157, 361, 585, 658
MroI TCCGGA 1 cut(s) 595
MroNI GCCGGC 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 1206
MseI TTAA 3 cut(s) 92, 678, 948
MslI CAYNNNNRTG 3 cut(s) 701, 825, 1184
MspA1I CMGCKG 4 cut(s) 312, 405, 754, 1280
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 6 cut(s) 167, 225, 303, 467, 482, 596
MspR9I CCNGG 5 cut(s) 48, 553, 661, 897, 1299
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 5 cut(s) 48, 553, 661, 897, 1299
MvnI CGCG 2 cut(s) 405, 477
NaeI GCCGGC 1 cut(s) 483
NarI GGCGCC 1 cut(s) 306
NcoI CCATGG 1 cut(s) 1270
NdeII GATC 4 cut(s) 366, 535, 592, 1294
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 5 cut(s) 542, 803, 824, 1274, 1376
NlaIV GGNNCC 5 cut(s) 307, 1127, 1128, 1177, 1303
NmeAIII GCCGAG 1 cut(s) 1101
NotI GCGGCCGC 2 cut(s) 313, 406
NspV TTCGAA 3 cut(s) 147, 1210, 1409
PagI TCATGA 1 cut(s) 538
PaqCI CACCTGC 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 977
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PctI GAATGC 1 cut(s) 763
PdiI GCCGGC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 5 cut(s) 51, 599, 1212, 1234, 1432
PflFI GACNNNGTC 1 cut(s) 274
PleI GAGTC 4 cut(s) 157, 360, 584, 658
PluTI GGCGCC 1 cut(s) 309
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
PpsI GAGTC 4 cut(s) 157, 360, 584, 658
Ppu21I YACGTR 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 1126
Psp5II RGGWCCY 1 cut(s) 1126
Psp6I CCWGG 5 cut(s) 46, 551, 659, 895, 1297
PspCI CACGTG 1 cut(s) 250
PspGI CCWGG 5 cut(s) 46, 551, 659, 895, 1297
PspN4I GGNNCC 5 cut(s) 307, 1127, 1128, 1177, 1303
PspPI GGNCC 3 cut(s) 464, 1126, 1302
PspPPI RGGWCCY 1 cut(s) 1126
PstI CTGCAG 2 cut(s) 1012, 1135
PstNI CAGNNNCTG 1 cut(s) 1315
PsyI GACNNNGTC 1 cut(s) 274
PvuII CAGCTG 2 cut(s) 754, 1280
RsaI GTAC 2 cut(s) 1169, 1319
RsaNI GTAC 2 cut(s) 1168, 1318
RseI CAYNNNNRTG 3 cut(s) 701, 825, 1184
SacII CCGCGG 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 3 cut(s) 92, 678, 948
Sau3AI GATC 4 cut(s) 366, 535, 592, 1294
Sau96I GGNCC 3 cut(s) 464, 1126, 1302
SchI GAGTC 4 cut(s) 157, 361, 585, 658
ScrFI CCNGG 5 cut(s) 48, 553, 661, 897, 1299
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 7 cut(s) 55, 179, 185, 191, 197, 351, 1062
SfcI CTRYAG 2 cut(s) 1008, 1131
SfoI GGCGCC 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 406
SfuI TTCGAA 3 cut(s) 147, 1210, 1409
SgrBI CCGCGG 1 cut(s) 406
SinI GGWCC 1 cut(s) 1126
SmiMI CAYNNNNRTG 3 cut(s) 701, 825, 1184
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
Sse9I AATT 7 cut(s) 89, 143, 149, 255, 434, 611, 1203
SseBI AGGCCT 1 cut(s) 977
SspDI GGCGCC 1 cut(s) 305
SspI AATATT 1 cut(s) 1038
SspMI CTAG 2 cut(s) 104, 1163
StuI AGGCCT 1 cut(s) 977
StyD4I CCNGG 5 cut(s) 46, 551, 659, 895, 1297
StyI CCWWGG 1 cut(s) 1270
TaaI ACNGT 4 cut(s) 725, 737, 1288, 1317
TaiI ACGT 2 cut(s) 252, 546
TaqI TCGA 7 cut(s) 147, 161, 534, 617, 840, 1210, 1409
TaqII GACCGA 1 cut(s) 592
TasI AATT 7 cut(s) 89, 143, 149, 255, 434, 611, 1203
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 8 cut(s) 315, 318, 408, 411, 526, 529, 551, 1097
TfiI GAWTC 5 cut(s) 51, 599, 1212, 1234, 1432
Tru1I TTAA 3 cut(s) 92, 678, 948
Tru9I TTAA 3 cut(s) 92, 678, 948
TscAI CASTG 6 cut(s) 503, 730, 742, 1096, 1177, 1291
TspDTI ATGAA 7 cut(s) 147, 732, 809, 875, 1215, 1262, 1424
TspGWI ACGGA 2 cut(s) 41, 1172
TspRI CASTG 6 cut(s) 503, 730, 742, 1096, 1177, 1291
Tth111I GACNNNGTC 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 1126
XapI RAATTY 4 cut(s) 143, 149, 255, 1203
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 2 cut(s) 104, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.