RchiOBHm_Chr1g0342991

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000101
Physical Location & Seq
Forward (+)
34817916 .. 34818359
444 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56957

Sequence Viewer

Length: 444 bp
ATGAAAACGTATGCTGATCTCGTCGTCAACAACAACACTGACAAGGCTGTTCAAAAATTGTTCCGCGAGTCACGCCTCTCCCCTTGGATAGAACAGTCGATGGAGGTGCACAAGGCTTTGGTAGAGGATGGAAATGTGGACGAGGCCATCGAGCTCTATCATACCATTCAACAGAAAGGCGTACAACCATTGGTCCAAATCCACACCTCAGTTATTAAAGCCTACCTCAAGTTTAGCAAGACCAAGGGTGCTCTGGAGGTGTATTTGGCCATGTCTGCTGGGGTTGCCCCCAACTCCTACACATACACTGTTTTAATCAAGGGACTCTGTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTACTTGCTTGAAATGATGGACAAGGGGAAGCAGCCTAATGTTGCTGCCTATACTGCGGTGATAGAAGGCTTTGTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.4

Weight (kDa)

6.83

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 49 - 146 3.3e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 69 - 110 4.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 64, 419
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 2 cut(s) 183, 365
AgsI TTSAA 3 cut(s) 53, 170, 374
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 3 cut(s) 111, 156, 253
Alw44I GTGCAC 1 cut(s) 107
AoxI GGCC 2 cut(s) 144, 267
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 394, 407
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 269
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 3 cut(s) 111, 156, 253
BbvI GCAGC 2 cut(s) 394, 406
BccI CCATC 4 cut(s) 94, 122, 155, 373
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BisI GCNGC 2 cut(s) 395, 408
BlsI GCNGC 2 cut(s) 396, 409
BmcAI AGTACT 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 83, 243
BseDI CCNNGG 2 cut(s) 83, 243
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 2 cut(s) 394, 406
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 146, 269
BsiHKAI GWGCWC 3 cut(s) 111, 156, 253
BslFI GGGAC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 146, 269
Bsp1286I GDGCHC 3 cut(s) 111, 156, 253
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 64, 419
BspANI GGCC 2 cut(s) 146, 269
BspCNI CTCAG 1 cut(s) 221
BspFNI CGCG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 83, 243
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 2 cut(s) 83, 243
Bst4CI ACNGT 2 cut(s) 96, 310
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 4 cut(s) 72, 275, 284, 416
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 394, 406
BsuRI GGCC 2 cut(s) 146, 269
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 36, 306
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 182, 364
CviAII CATG 1 cut(s) 271
CviJI RGCY 8 cut(s) 47, 116, 146, 154, 221, 269, 397, 432
CviKI_1 RGCY 8 cut(s) 47, 116, 146, 154, 221, 269, 397, 432
CviQI GTAC 2 cut(s) 182, 364
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 83, 243
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 83, 243
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 83, 243
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 12, 162, 272, 304, 414
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 336
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 395, 408
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 395, 408
GluI GCNGC 2 cut(s) 395, 408
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 146, 269
Hin1II CATG 1 cut(s) 274
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 68, 324
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 3 cut(s) 28, 109, 139
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 3 cut(s) 28, 109, 139
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 2 cut(s) 96, 310
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 275, 284, 416
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 239, 264
Lsp1109I GCAGC 2 cut(s) 394, 406
LweI GCATC 1 cut(s) 343
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MhlI GDGCHC 3 cut(s) 111, 156, 253
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 2 cut(s) 77, 318
MnlI CCTC 7 cut(s) 86, 97, 118, 136, 217, 236, 250
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 216, 314
Msp20I TGGCCA 1 cut(s) 269
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 72, 275, 284, 416
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PkrI GCNGC 2 cut(s) 396, 409
PleI GAGTC 2 cut(s) 76, 318
PpsI GAGTC 2 cut(s) 76, 318
Psp124BI GAGCTC 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 193
RsaI GTAC 2 cut(s) 183, 365
RsaNI GTAC 2 cut(s) 182, 364
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 216, 314
SatI GCNGC 2 cut(s) 395, 408
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 2 cut(s) 77, 318
SduI GDGCHC 3 cut(s) 111, 156, 253
SetI ASST 6 cut(s) 11, 108, 156, 209, 228, 261
SfaNI GCATC 1 cut(s) 343
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 64, 419
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 2 cut(s) 83, 243
TaaI ACNGT 2 cut(s) 96, 310
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 98, 150
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 363
Tru1I TTAA 2 cut(s) 216, 314
Tru9I TTAA 2 cut(s) 216, 314
TscAI CASTG 2 cut(s) 43, 313
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 2 cut(s) 394, 407
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 43, 313
VneI GTGCAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.