Rh1DG165000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000101
Physical Location & Seq
Reverse (-)
33877843 .. 33882656
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG165000.1

Sequence Viewer

Length: 1047 bp
ATGGTTGGGGACTACGACGCCCTTAATGCAAGTGCTATTCATCTTTTCAATTCTATGGCAGATTCCGACTTCCTTGATGAAGCGAGAGAGCTCTTCAAGCCACTCGCTGATCAAGCCACGCTGCCGGAAGTGGCAGGCTTCACCATGGATGCTCTCAAGGTCTACCAGCACATGATAGCCACTGGTGTCACCCCTGCCTGCCTCCTACACTTACACCGGGGGGTGAAGCCCCATTCTCAAACTTACATGAAAGTTATGAATGCCATTGCCTACCAAGAGCAGGTGGAGGAGGCCAAGGGGTTCCTTGAACAGATAAAGGCCAAGGGGTTCAACACTTACCACAATGGTTTTCGATACAAAGATGGCCACCTCACTGAAGCAATGCAGGATGGAAATGTGGATGAGGCCACGGAGTTCTATAACACCATTGAACAGAAGGACATAGAGCCCATAGTCCTAATCCACACCTCTGTTATTGAAGCCTACCTGAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATTCCTGGCCATGTTAGCTGCTGGGGTTGCTCCCAACTCCTACACTTACACAGTTTTAATCGAGGGACTCGCTGCTGACCGCAACTTCTTTGGAGATTCTAAGAAGTACTTGCTTGAGATGATGGACAAGGGGAAGCGGCCCAATGCAGCTACCTACACTGCGGTGATAGAGGGTTTTGCAAGGCAGGAAGGCAGGGCAGCTGAGGATGAGGGCAAAGAGTTTGTGGAGGTGATGATGGAACTTCAGAACCCCTTAGTGCTTGTGATCTATCAAAGTTGCCAAAGTATCTTCCCACCAAAGAAATGGATGCTAAAAGTTGTTAGGGTGAACAAAGGAAAGAGCCTGCACATTTACAACAGCGAAATCAACAATCTGGTGGTGCAGGGTATATCAAATCCCTGTAATCAGAAGAGATGCCAAAACAGCCTTCTGGACATCTTGCCAACTTATATACAAGCTTCTCTAGTTTATCTTTGTTGCAGTGGAAAGGGCTCTTATTCTTCAGGATTGACTTCTTGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

348

Amino Acids

38.73

Weight (kDa)

5.76

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 125 - 237 1e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 156 - 198 5.4e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 162
AciI CCGC 3 cut(s) 601, 658, 683
AcoI YGGCCR 2 cut(s) 364, 528
AcuI CTGAAG 4 cut(s) 396, 509, 749, 1008
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 49, 97, 308, 331, 431, 479
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AleI CACNNNNGTG 1 cut(s) 683
AluBI AGCT 5 cut(s) 91, 539, 671, 722, 980
AluI AGCT 5 cut(s) 91, 539, 671, 722, 980
Alw21I GWGCWC 2 cut(s) 93, 514
AoxI GGCC 6 cut(s) 291, 318, 364, 405, 528, 659
ApeKI GCWGC 5 cut(s) 121, 539, 593, 668, 719
AspS9I GGNCC 1 cut(s) 660
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 6 cut(s) 133, 181, 235, 697, 763, 859
BalI TGGCCA 2 cut(s) 366, 530
BanII GRGCYC 3 cut(s) 93, 450, 1016
Bbv12I GWGCWC 2 cut(s) 93, 514
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 108, 526, 580, 680, 731
BccI CCATC 4 cut(s) 356, 383, 637, 751
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 986
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 6 cut(s) 122, 540, 594, 659, 669, 720
BlsI GCNGC 6 cut(s) 123, 541, 595, 660, 670, 721
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 2 cut(s) 218, 527
BmgT120I GGNCC 1 cut(s) 660
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 218, 527
BmsI GCATC 3 cut(s) 139, 819, 926
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 2 cut(s) 140, 656
BpuMI CCSGG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 6 cut(s) 144, 217, 294, 321, 408, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 2 cut(s) 264, 387
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 6 cut(s) 144, 217, 294, 321, 408, 504
BseGI GGATG 5 cut(s) 154, 394, 406, 733, 834
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 264, 387
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 5 cut(s) 108, 526, 580, 680, 731
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 2 cut(s) 851, 923
BshFI GGCC 6 cut(s) 293, 320, 366, 407, 530, 661
BsiHKAI GWGCWC 2 cut(s) 93, 514
BsiSI CCGG 2 cut(s) 125, 217
BslFI GGGAC 2 cut(s) 23, 600
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 23, 600
BsmI GAATGC 2 cut(s) 265, 521
BsnI GGCC 6 cut(s) 293, 320, 366, 407, 530, 661
Bsp1286I GDGCHC 4 cut(s) 93, 450, 514, 1016
Bsp143I GATC 2 cut(s) 109, 786
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 601, 658, 683
BspANI GGCC 6 cut(s) 293, 320, 366, 407, 530, 661
BspCNI CTCAG 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 264, 387
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 6 cut(s) 144, 217, 294, 321, 408, 504
BssMI GATC 2 cut(s) 109, 786
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 4 cut(s) 144, 294, 321, 504
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 2 cut(s) 98, 926
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 136, 199, 866
BstDEI CTNAG 3 cut(s) 621, 723, 775
BstDSI CCRYGG 2 cut(s) 144, 408
BstF5I GGATG 5 cut(s) 154, 394, 406, 733, 834
BstKTI GATC 2 cut(s) 112, 789
BstMBI GATC 2 cut(s) 109, 786
BstMWI GCNNNNNNNGC 8 cut(s) 26, 97, 113, 518, 527, 536, 548, 945
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 216, 525
BstV1I GCAGC 5 cut(s) 108, 526, 580, 680, 731
BstXI CCANNNNNNTGG 1 cut(s) 825
BsuRI GGCC 6 cut(s) 293, 320, 366, 407, 530, 661
BtgI CCRYGG 2 cut(s) 144, 408
BtsCI GGATG 5 cut(s) 154, 394, 406, 733, 834
BtsI GCAGTG 2 cut(s) 678, 1009
BtsIMutI CAGTG 4 cut(s) 180, 372, 678, 1009
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 136, 199, 866
Cfr13I GGNCC 1 cut(s) 660
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 628
CviAII CATG 4 cut(s) 145, 172, 247, 532
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 3 cut(s) 621, 723, 775
DpnI GATC 2 cut(s) 111, 788
DpnII GATC 2 cut(s) 109, 786
EaeI YGGCCR 2 cut(s) 364, 528
Eam1104I CTCTTC 2 cut(s) 98, 926
EarI CTCTTC 2 cut(s) 98, 926
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 4 cut(s) 144, 294, 321, 504
Eco24I GRGCYC 3 cut(s) 93, 450, 1016
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 4 cut(s) 396, 509, 749, 1008
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 4 cut(s) 144, 294, 321, 504
EcoT38I GRGCYC 3 cut(s) 93, 450, 1016
ErhI CCWWGG 4 cut(s) 144, 294, 321, 504
FaeI CATG 4 cut(s) 148, 175, 250, 535
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 2 cut(s) 23, 600
FatI CATG 4 cut(s) 144, 171, 246, 531
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 6 cut(s) 122, 540, 594, 659, 669, 720
FokI GGATG 5 cut(s) 161, 401, 413, 740, 841
FriOI GRGCYC 3 cut(s) 93, 450, 1016
Fsp4HI GCNGC 6 cut(s) 122, 540, 594, 659, 669, 720
FspBI CTAG 1 cut(s) 986
GluI GCNGC 6 cut(s) 122, 540, 594, 659, 669, 720
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 6 cut(s) 293, 320, 366, 407, 530, 661
HapII CCGG 2 cut(s) 125, 217
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 4 cut(s) 148, 175, 250, 535
HindIII AAGCTT 1 cut(s) 978
HinfI GANTC 3 cut(s) 62, 588, 617
HpaII CCGG 2 cut(s) 125, 217
HphI GGTGA 6 cut(s) 133, 181, 235, 697, 763, 859
Hpy166II GTNNAC 2 cut(s) 163, 850
Hpy188I TCNGA 3 cut(s) 67, 768, 930
Hpy188III TCNNGA 3 cut(s) 515, 953, 1026
Hpy8I GTNNAC 2 cut(s) 163, 850
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 430, 704, 959
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 7 cut(s) 29, 385, 668, 701, 868, 904, 1002
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 97, 113, 518, 527, 536, 548, 945
HpyF3I CTNAG 3 cut(s) 621, 723, 775
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 4 cut(s) 148, 175, 250, 535
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 109, 786
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 5 cut(s) 108, 526, 580, 680, 731
LweI GCATC 3 cut(s) 139, 819, 926
MaeI CTAG 1 cut(s) 986
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 111, 788
MboI GATC 2 cut(s) 109, 786
MboII GAAGA 4 cut(s) 85, 802, 943, 1014
MhlI GDGCHC 4 cut(s) 93, 450, 514, 1016
MlsI TGGCCA 2 cut(s) 366, 530
MluCI AATT 1 cut(s) 49
MluNI TGGCCA 2 cut(s) 366, 530
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 90
Mox20I TGGCCA 2 cut(s) 366, 530
MscI TGGCCA 2 cut(s) 366, 530
MseI TTAA 3 cut(s) 24, 578, 1045
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 2 cut(s) 366, 530
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 2 cut(s) 125, 217
MspR9I CCNGG 2 cut(s) 218, 527
Mva1269I GAATGC 2 cut(s) 265, 521
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 8 cut(s) 26, 97, 113, 518, 527, 536, 548, 945
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 144
NdeII GATC 2 cut(s) 109, 786
NlaIII CATG 4 cut(s) 148, 175, 250, 535
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 683
PaqCI CACCTGC 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 2 cut(s) 265, 521
PfeI GAWTC 2 cut(s) 62, 617
PkrI GCNGC 6 cut(s) 123, 541, 595, 660, 670, 721
PleI GAGTC 1 cut(s) 582
PpsI GAGTC 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 660
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 683
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 24, 578, 1045
SatI GCNGC 6 cut(s) 122, 540, 594, 659, 669, 720
Sau3AI GATC 2 cut(s) 109, 786
Sau96I GGNCC 1 cut(s) 660
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 2 cut(s) 218, 527
SduI GDGCHC 4 cut(s) 93, 450, 514, 1016
SfaNI GCATC 3 cut(s) 139, 819, 926
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 155, 635
SmoI CTYRAG 2 cut(s) 155, 635
Sse9I AATT 1 cut(s) 49
SsiI CCGC 3 cut(s) 601, 658, 683
SspMI CTAG 1 cut(s) 986
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 216, 525
StyI CCWWGG 4 cut(s) 144, 294, 321, 504
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 2 cut(s) 352, 582
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 627
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 2 cut(s) 62, 617
Tru1I TTAA 3 cut(s) 24, 578, 1045
Tru9I TTAA 3 cut(s) 24, 578, 1045
TscAI CASTG 4 cut(s) 187, 379, 685, 1009
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 5 cut(s) 121, 539, 593, 668, 719
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 29, 93, 263, 272
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 4 cut(s) 187, 379, 685, 1009
XcmI CCANNNNNNNNNTGG 2 cut(s) 511, 822
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 986
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.