Rmu_sc0011173.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011173.1
OG0000101
Physical Location & Seq
Forward (+)
638 .. 1211
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011173.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
atgtttgacatgaatattggggattacaactccgttaacgagtatgcgattaaggtgttcgatgctatggcaaatgacaccctcgctgaggaagccaaagagctgtttaagcctcgctctgagtcggaagtactgcctgacgtggccatctacaccattgtcatttgggcctgcatctgttccagcaagatcaaggggatgacgcctccttcatcttcctacatggccgtcttcaaagccattgcacgccaggagccggtggtgaaggccaaggagttccttgagcagatacaagcaaaggggttcagccctaagttggacgttcctcactttgatgttgcctacatggaagaagcaatgaaggcattgaagatgtctgacgttcttatcaacgctaagaagttgcaaaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

5.47

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 144, 225
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 88, 256, 316
AgsI TTSAA 2 cut(s) 235, 370
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AoxI GGCC 4 cut(s) 144, 168, 225, 267
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 274
BalI TGGCCA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 251
BfaI CTAG 1 cut(s) 415
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 2 cut(s) 52, 183
BpiI GAAGAC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 256, 316
Bse118I RCCGGY 1 cut(s) 256
Bse3DI GCAATG 2 cut(s) 240, 363
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 88, 256, 316
BseMI GCAATG 2 cut(s) 240, 363
BseMII CTCAG 2 cut(s) 78, 111
BshFI GGCC 4 cut(s) 146, 170, 227, 269
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 88, 256, 316
BsnI GGCC 4 cut(s) 146, 170, 227, 269
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 4 cut(s) 146, 170, 227, 269
BspCNI CTCAG 2 cut(s) 79, 112
BspLI GGNNCC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 240, 363
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 172, 247
BstDEI CTNAG 4 cut(s) 87, 120, 312, 396
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 92, 109, 362
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 4 cut(s) 146, 170, 227, 269
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 172, 247
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 168
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 10, 223, 346
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 4 cut(s) 87, 120, 312, 396
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
EaeI YGGCCR 2 cut(s) 144, 225
Eco130I CCWWGG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 13, 226, 349
FaiI YATR 5 cut(s) 11, 45, 68, 224, 347
FatI CATG 3 cut(s) 9, 222, 345
FokI GGATG 1 cut(s) 211
FspBI CTAG 1 cut(s) 415
HaeIII GGCC 4 cut(s) 146, 170, 227, 269
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 211
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 3 cut(s) 13, 226, 349
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 122
HpaI GTTAAC 1 cut(s) 37
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 121, 127, 379
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 219, 259, 355
HpyCH4IV ACGT 3 cut(s) 141, 321, 381
HpyCH4V TGCA 3 cut(s) 174, 245, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 109, 362
HpyF3I CTNAG 4 cut(s) 87, 120, 312, 396
HpySE526I ACGT 3 cut(s) 141, 321, 381
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 3 cut(s) 13, 226, 349
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 6 cut(s) 150, 184, 196, 236, 263, 270
LweI GCATC 2 cut(s) 52, 183
MaeI CTAG 1 cut(s) 415
MaeII ACGT 3 cut(s) 141, 321, 381
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 207, 223, 362, 382
MlsI TGGCCA 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 105, 297
MnlI CCTC 5 cut(s) 82, 92, 123, 216, 336
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 3 cut(s) 36, 51, 108
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 146
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 92, 109, 362
NdeII GATC 1 cut(s) 189
NlaIII CATG 3 cut(s) 13, 226, 349
NlaIV GGNNCC 1 cut(s) 255
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 36, 51, 108
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 251
SetI ASST 5 cut(s) 57, 105, 144, 324, 384
SfaNI GCATC 2 cut(s) 52, 183
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 270
TaiI ACGT 3 cut(s) 144, 324, 384
TaqI TCGA 1 cut(s) 60
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 3 cut(s) 36, 51, 108
Tru9I TTAA 3 cut(s) 36, 51, 108
TspDTI ATGAA 3 cut(s) 26, 201, 374
TspGWI ACGGA 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 86
XspI CTAG 1 cut(s) 415
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.