Rmu_sc0005998.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005998.1
OG0000101
Physical Location & Seq
Forward (+)
4 .. 624
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005998.1_g000001.1.cds

Sequence Viewer

Length: 621 bp
atgtttactgtagggtgtttgaaggcattgcctgtgtggacagtcagggggttccttgagttgataaagactaaggtgcttgtgcctgaatgtgttaattttgagaaagaaaacctggaggatgtgatcatggcaatgaagttgcatcattatcttgagaagacggctgatgaggacatgcaaagagtcttacatgactggcgcatccaaggcacccagaaacaggcagacaacatgtacaaggctttacttgatgatggaaatagacacgaggcgtggattctctttcagaagcagtaccatgagtcgagtgtgcaccacatggttgtcctgtatacctgtgttattgaaaccttcatcaatgctggcaagaccaagggtgctctggaggtgtaccagcgcatgttggatgatgggtattccccgtgctcctacacttactcaattttgatcaaggcacttgctgctgaccccagcttctttgaagatgcaaagaaatactttcttgagatgatggagaaaggaatgcggcccaatgctgctatctacactgcagtgttagaggggtttgcgaggcaggatgacaatgcagctggggaggaaggaaaaaaaagtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.69

Weight (kDa)

5.66

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 335
AciI CCGC 1 cut(s) 529
AfaI GTAC 3 cut(s) 239, 299, 395
AfiI CCNNNNNNNGG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 3 cut(s) 22, 350, 485
AjnI CCWGG 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 2 cut(s) 477, 593
AluI AGCT 2 cut(s) 477, 593
Alw21I GWGCWC 3 cut(s) 318, 385, 431
Alw44I GTGCAC 1 cut(s) 314
AoxI GGCC 1 cut(s) 530
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 464, 539, 590
AspLEI GCGC 2 cut(s) 204, 402
AspS9I GGNCC 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 3 cut(s) 318, 385, 431
BbvI GCAGC 3 cut(s) 451, 526, 602
BccI CCATC 3 cut(s) 251, 407, 508
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 2 cut(s) 126, 450
BfmI CTRYAG 2 cut(s) 9, 552
BisI GCNGC 4 cut(s) 465, 530, 540, 591
BlsI GCNGC 4 cut(s) 466, 531, 541, 592
Bme1390I CCNGG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 53, 214
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 154, 213, 478
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 2 cut(s) 137, 407
BpuEI CTTGAG 3 cut(s) 77, 176, 527
BsaJI CCNNGG 2 cut(s) 208, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 26, 141
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 208, 375
BseGI GGATG 4 cut(s) 127, 204, 415, 586
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 2 cut(s) 26, 141
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 3 cut(s) 451, 526, 602
BseYI CCCAGC 2 cut(s) 473, 593
BshFI GGCC 1 cut(s) 532
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 3 cut(s) 318, 385, 431
BslI CCNNNNNNNGG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 318, 385, 431
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 2 cut(s) 126, 450
BspACI CCGC 1 cut(s) 529
BspANI GGCC 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 53, 214
BspMAI CTGCAG 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 26, 141
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 208, 375
BssMI GATC 2 cut(s) 126, 450
BssNAI GTATAC 1 cut(s) 336
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 2 cut(s) 208, 375
Bst1107I GTATAC 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 10, 43
BstAPI GCANNNNNTGC 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 127, 204, 415, 586
BstHHI GCGC 2 cut(s) 204, 402
BstKTI GATC 2 cut(s) 129, 453
BstMBI GATC 2 cut(s) 126, 450
BstMWI GCNNNNNNNGC 2 cut(s) 210, 464
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 3 cut(s) 181, 238, 406
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 9, 552
BstSLI GKGCMC 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 451, 526, 602
BstV2I GAAGAC 1 cut(s) 167
BstZ17I GTATAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 532
BtsCI GGATG 4 cut(s) 127, 204, 415, 586
BtsI GCAGTG 2 cut(s) 549, 561
BtsIMutI CAGTG 2 cut(s) 549, 561
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 2 cut(s) 204, 402
Cfr13I GGNCC 1 cut(s) 531
Csp6I GTAC 3 cut(s) 238, 298, 394
CviAII CATG 7 cut(s) 130, 178, 194, 235, 302, 322, 403
CviJI RGCY 5 cut(s) 167, 245, 477, 532, 593
CviKI_1 RGCY 5 cut(s) 167, 245, 477, 532, 593
CviQI GTAC 3 cut(s) 238, 298, 394
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 128, 452
DpnII GATC 2 cut(s) 126, 450
Eco130I CCWWGG 2 cut(s) 208, 375
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 208, 375
ErhI CCWWGG 2 cut(s) 208, 375
FaeI CATG 7 cut(s) 133, 181, 197, 238, 305, 325, 406
FaiI YATR 8 cut(s) 131, 179, 195, 236, 303, 323, 336, 404
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FatI CATG 7 cut(s) 129, 177, 193, 234, 301, 321, 402
FbaI TGATCA 2 cut(s) 126, 450
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 4 cut(s) 465, 530, 540, 591
FokI GGATG 4 cut(s) 134, 191, 422, 593
Fsp4HI GCNGC 4 cut(s) 465, 530, 540, 591
GlaI GCGC 2 cut(s) 203, 401
GluI GCNGC 4 cut(s) 465, 530, 540, 591
GsaI CCCAGC 2 cut(s) 477, 597
GsuI CTGGAG 2 cut(s) 137, 407
HaeIII GGCC 1 cut(s) 532
HhaI GCGC 2 cut(s) 204, 402
Hin1II CATG 7 cut(s) 133, 181, 197, 238, 305, 325, 406
Hin6I GCGC 2 cut(s) 202, 400
HinP1I GCGC 2 cut(s) 202, 400
HinfI GANTC 3 cut(s) 186, 280, 305
Hpy166II GTNNAC 5 cut(s) 6, 39, 316, 336, 394
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 3 cut(s) 155, 386, 506
Hpy8I GTNNAC 5 cut(s) 6, 39, 316, 336, 394
HpyAV CCTTC 3 cut(s) 16, 364, 596
HpyCH4III ACNGT 2 cut(s) 10, 43
HpyCH4V TGCA 6 cut(s) 145, 181, 316, 491, 554, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 464
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 7 cut(s) 133, 181, 197, 238, 305, 325, 406
HspAI GCGC 2 cut(s) 202, 400
Ksp22I TGATCA 2 cut(s) 126, 450
Kzo9I GATC 2 cut(s) 126, 450
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 3 cut(s) 451, 526, 602
LweI GCATC 3 cut(s) 154, 213, 478
MalI GATC 2 cut(s) 128, 452
MboI GATC 2 cut(s) 126, 450
MboII GAAGA 2 cut(s) 172, 497
MhlI GDGCHC 3 cut(s) 318, 385, 431
MluCI AATT 2 cut(s) 97, 444
MlyI GAGTC 2 cut(s) 195, 314
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 7 cut(s) 112, 166, 265, 382, 556, 567, 592
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 134, 554
MspA1I CMGCKG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 210, 464
NdeII GATC 2 cut(s) 126, 450
NlaIII CATG 7 cut(s) 133, 181, 197, 238, 305, 325, 406
NlaIV GGNNCC 2 cut(s) 53, 214
NspI RCATGY 3 cut(s) 181, 238, 406
OliI CACNNNNGTG 1 cut(s) 554
PciI ACATGT 1 cut(s) 234
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 4 cut(s) 466, 531, 541, 592
PleI GAGTC 2 cut(s) 194, 313
PpsI GAGTC 2 cut(s) 194, 313
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 2 cut(s) 473, 593
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 53, 214
PspPI GGNCC 1 cut(s) 531
PstI CTGCAG 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 239, 299, 395
RsaNI GTAC 3 cut(s) 238, 298, 394
RseI CAYNNNNRTG 2 cut(s) 134, 554
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 465, 530, 540, 591
Sau3AI GATC 2 cut(s) 126, 450
Sau96I GGNCC 1 cut(s) 531
SchI GAGTC 2 cut(s) 195, 314
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 318, 385, 431
SetI ASST 7 cut(s) 78, 117, 341, 356, 393, 479, 595
SfaNI GCATC 3 cut(s) 154, 213, 478
SfcI CTRYAG 2 cut(s) 9, 552
SmiMI CAYNNNNRTG 2 cut(s) 134, 554
SmlI CTYRAG 3 cut(s) 56, 155, 506
SmoI CTYRAG 3 cut(s) 56, 155, 506
Sse9I AATT 2 cut(s) 97, 444
SsiI CCGC 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 208, 375
TaaI ACNGT 2 cut(s) 10, 43
TaqI TCGA 1 cut(s) 308
TasI AATT 2 cut(s) 97, 444
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 556, 561
TseI GCWGC 3 cut(s) 464, 539, 590
TspDTI ATGAA 2 cut(s) 152, 346
TspRI CASTG 2 cut(s) 556, 561
VneI GTGCAC 1 cut(s) 314
XceI RCATGY 3 cut(s) 181, 238, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.