Rroxscaffold_3G00225010

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Forward (+)
8264879 .. 8266088
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225010.1

Sequence Viewer

Length: 1161 bp
ATGGCTGACACACCTAATTCTAGTGATGAAGACCTCAAGAAACATTTGATGAAGGTTTATGAGGATGTGACCAGAGACTGTGAAGATAAGGAATTGAGAAAAATATTTGATTGGATTGTGGACTACGATGCCCTTAATGCAAATGCGATTCATATGTTCAGTTCTCTGGTAGATTGCGGCTTCTGTGATGAAGCGAGAGAGCTCTTTAAGCCTCATTCTGAGCAGACCACACTGCCGGAAGTGGCTGTCTTCACCATGACCAAGGATGCTCACAAGGTCTATCAGCAGATGATAGCATCTGGTGTCACCCCCACCGCCTACACTTACACTTTAATCATCTGCGGAATGGCAAAAGACTTTTCGGATTCTAATTTCGTCGGGTATGCCAAGAAGTATTTCCTTGAAATGTTGGATAGGGGGTTGAAGCCCCAATATCAACCCTACATGTATGTTATGGATGCCATTGCCTACCGAGAGCCAGTGGAGGAGGTCAAGAAGTTCCTTGAGCAGATAAAAGCTAAGGGAAAACCACTCACAGAAGCATTGCAGGCAATGAAAACATATGTTGATCTCGTCGTCAACAACAACACTGACAAGGCTGTTCAAAAATTGTTCCGCGCGTCACACCTCTCCCCTTGGATAGAACGGTCGATGGAGGTGCACAAGGCTTTGGTAGAGGATGGAAATGTGGACGAGGCCATCGAGCTCTATCATACCATTCAACAGGCAGGCGTAGAGCCATTGGTCCAAATCCACACCTCTGTTATTAAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCGTATCTGGCCATGTCAGCTGCTGGGGTTGCCCCCAACTCCTACACATACACTGTTTTAATCAAGGGACTCTGTGCTGACCCCAACTTCTTTGGAGATGCCAAGAAGTACTTGCTTGAGATGATGGACAAGGGGAAGCAGCCTAATGTTGCTGCCTATACTGTGGTGATAGAAGGCTTTGTGCTTTGGGAGGACAAGATAGCTGAGGAAAAGGGCAAAGAGTTTGTGGAGATGATGATGGGTAAAGGTTTTGTGCCTAATGCGAAGGCTATGATGAAGGTTTTAAAGGGCAAACCAACACCGGTAATTGGAAGGGTCATGAGCCTTGTACTTTCCAAGTTGAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

386

Amino Acids

43.53

Weight (kDa)

6.12

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 118 3e-06 PPR repeat family
TPR_24 PF23276 233 - 334 5.7e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 253 - 295 1.9e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 618, 620
AciI CCGC 4 cut(s) 177, 315, 342, 616
AcoI YGGCCR 1 cut(s) 819
AfaI GTAC 2 cut(s) 920, 1140
AfiI CCNNNNNNNGG 1 cut(s) 1118
AflIII ACRYGT 1 cut(s) 444
AgeI ACCGGT 1 cut(s) 1111
AgsI TTSAA 5 cut(s) 404, 424, 605, 722, 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 6 cut(s) 202, 518, 706, 830, 1013, 1158
AluI AGCT 6 cut(s) 202, 518, 706, 830, 1013, 1158
Alw21I GWGCWC 4 cut(s) 204, 663, 708, 805
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 659
AlwNI CAGNNNCTG 2 cut(s) 78, 833
AoxI GGCC 2 cut(s) 696, 819
ApaLI GTGCAC 1 cut(s) 659
ApeKI GCWGC 3 cut(s) 830, 949, 962
AsiGI ACCGGT 1 cut(s) 1111
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 244, 298, 988
AvaII GGWCC 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 663
BalI TGGCCA 1 cut(s) 821
BanII GRGCYC 2 cut(s) 204, 708
BbsI GAAGAC 2 cut(s) 36, 241
Bbv12I GWGCWC 4 cut(s) 204, 663, 708, 805
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 817, 949, 961
BccI CCATC 5 cut(s) 646, 674, 707, 928, 1042
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 21
BisI GCNGC 4 cut(s) 178, 831, 950, 963
BlsI GCNGC 4 cut(s) 179, 832, 951, 964
BmcAI AGTACT 1 cut(s) 920
Bme18I GGWCC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 745
BmsI GCATC 5 cut(s) 118, 256, 305, 448, 898
BpiI GAAGAC 2 cut(s) 36, 241
BpmI CTGGAG 1 cut(s) 827
Bpu10I CCTNAGC 2 cut(s) 519, 1014
BpuEI CTTGAG 4 cut(s) 20, 524, 764, 947
BsaJI CCNNGG 3 cut(s) 261, 635, 795
BsaWI WCCGGW 1 cut(s) 1111
Bsc4I CCNNNNNNNGG 1 cut(s) 1118
Bse118I RCCGGY 1 cut(s) 1111
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 3 cut(s) 462, 542, 558
BseDI CCNNGG 3 cut(s) 261, 635, 795
BseGI GGATG 4 cut(s) 70, 271, 463, 685
BseLI CCNNNNNNNGG 1 cut(s) 1118
BseMI GCAATG 3 cut(s) 462, 542, 558
BseMII CTCAG 2 cut(s) 210, 1005
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 3 cut(s) 817, 949, 961
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 2 cut(s) 618, 620
Bsh1285I CGRYCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 698, 821
BshTI ACCGGT 1 cut(s) 1111
BsiEI CGRYCG 1 cut(s) 650
BsiHKAI GWGCWC 4 cut(s) 204, 663, 708, 805
BsiSI CCGG 2 cut(s) 236, 1112
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 1 cut(s) 1118
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 2 cut(s) 698, 821
Bsp1286I GDGCHC 4 cut(s) 204, 663, 708, 805
Bsp143I GATC 1 cut(s) 568
BspACI CCGC 4 cut(s) 177, 315, 342, 616
BspANI GGCC 2 cut(s) 698, 821
BspCNI CTCAG 2 cut(s) 211, 1006
BspFNI CGCG 2 cut(s) 618, 620
BspHI TCATGA 1 cut(s) 1128
BspQI GCTCTTC 1 cut(s) 1148
BsrDI GCAATG 3 cut(s) 462, 542, 558
BsrFI RCCGGY 1 cut(s) 1111
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 1111
BssECI CCNNGG 3 cut(s) 261, 635, 795
BssMI GATC 1 cut(s) 568
BssT1I CCWWGG 3 cut(s) 261, 635, 795
Bst4CI ACNGT 4 cut(s) 80, 648, 865, 973
Bst6I CTCTTC 1 cut(s) 1148
BstC8I GCNNGC 2 cut(s) 549, 730
BstDEI CTNAG 3 cut(s) 219, 519, 1014
BstF5I GGATG 4 cut(s) 70, 271, 463, 685
BstFNI CGCG 2 cut(s) 618, 620
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 568
BstMCI CGRYCG 1 cut(s) 650
BstMWI GCNNNNNNNGC 7 cut(s) 137, 208, 548, 809, 818, 827, 839
BstNSI RCATGY 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 2 cut(s) 618, 620
BstV1I GCAGC 3 cut(s) 817, 949, 961
BstV2I GAAGAC 2 cut(s) 36, 241
BsuRI GGCC 2 cut(s) 698, 821
BtsCI GGATG 4 cut(s) 70, 271, 463, 685
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 4 cut(s) 230, 486, 588, 861
Cac8I GCNNGC 2 cut(s) 549, 730
CaiI CAGNNNCTG 2 cut(s) 78, 833
CciI TCATGA 1 cut(s) 1128
CfoI GCGC 1 cut(s) 620
Cfr10I RCCGGY 1 cut(s) 1111
Cfr13I GGNCC 1 cut(s) 745
CseI GACGC 1 cut(s) 609
Csp6I GTAC 2 cut(s) 919, 1139
CspAI ACCGGT 1 cut(s) 1111
CviAII CATG 4 cut(s) 256, 445, 823, 1129
CviQI GTAC 2 cut(s) 919, 1139
DdeI CTNAG 3 cut(s) 219, 519, 1014
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 1 cut(s) 1148
EarI CTCTTC 1 cut(s) 1148
Ecl136II GAGCTC 2 cut(s) 202, 706
Eco130I CCWWGG 3 cut(s) 261, 635, 795
Eco24I GRGCYC 2 cut(s) 204, 708
Eco47I GGWCC 1 cut(s) 745
Eco53kI GAGCTC 2 cut(s) 202, 706
EcoICRI GAGCTC 2 cut(s) 202, 706
EcoT14I CCWWGG 3 cut(s) 261, 635, 795
EcoT38I GRGCYC 2 cut(s) 204, 708
ErhI CCWWGG 3 cut(s) 261, 635, 795
FaeI CATG 4 cut(s) 259, 448, 826, 1132
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 891
FatI CATG 4 cut(s) 255, 444, 822, 1128
FauNDI CATATG 2 cut(s) 153, 562
Fnu4HI GCNGC 4 cut(s) 178, 831, 950, 963
FokI GGATG 4 cut(s) 77, 278, 470, 692
FriOI GRGCYC 2 cut(s) 204, 708
Fsp4HI GCNGC 4 cut(s) 178, 831, 950, 963
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 619
GluI GCNGC 4 cut(s) 178, 831, 950, 963
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 827
HaeIII GGCC 2 cut(s) 698, 821
HapII CCGG 2 cut(s) 236, 1112
HgaI GACGC 1 cut(s) 609
HhaI GCGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 259, 448, 826, 1132
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 3 cut(s) 148, 365, 879
HpaII CCGG 2 cut(s) 236, 1112
HphI GGTGA 3 cut(s) 244, 298, 988
Hpy166II GTNNAC 4 cut(s) 121, 580, 661, 691
Hpy188I TCNGA 2 cut(s) 220, 364
Hpy188III TCNNGA 4 cut(s) 37, 493, 806, 1129
Hpy8I GTNNAC 4 cut(s) 121, 580, 661, 691
Hpy99I CGWCG 2 cut(s) 380, 578
HpyAV CCTTC 5 cut(s) 46, 977, 1069, 1081, 1116
HpyCH4III ACNGT 4 cut(s) 80, 648, 865, 973
HpyCH4V TGCA 3 cut(s) 140, 547, 661
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 208, 548, 809, 818, 827, 839
HpyF3I CTNAG 3 cut(s) 219, 519, 1014
Hsp92II CATG 4 cut(s) 259, 448, 826, 1132
HspAI GCGC 1 cut(s) 618
Kzo9I GATC 1 cut(s) 568
LguI GCTCTTC 1 cut(s) 1148
Lsp1109I GCAGC 3 cut(s) 817, 949, 961
LweI GCATC 5 cut(s) 118, 256, 305, 448, 898
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 67, 304, 621
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 3 cut(s) 41, 95, 241
MhlI GDGCHC 4 cut(s) 204, 663, 708, 805
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 5 cut(s) 16, 92, 370, 608, 1116
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 1 cut(s) 873
MmeI TCCRAC 1 cut(s) 390
Mox20I TGGCCA 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 821
MseI TTAA 6 cut(s) 135, 207, 332, 768, 869, 1094
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 2 cut(s) 236, 1112
MvnI CGCG 2 cut(s) 618, 620
MwoI GCNNNNNNNGC 7 cut(s) 137, 208, 548, 809, 818, 827, 839
NdeI CATATG 2 cut(s) 153, 562
NdeII GATC 1 cut(s) 568
NlaIII CATG 4 cut(s) 259, 448, 826, 1132
NmuCI GTSAC 3 cut(s) 67, 304, 621
NspI RCATGY 1 cut(s) 448
PagI TCATGA 1 cut(s) 1128
PciI ACATGT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 1148
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 148, 365
PinAI ACCGGT 1 cut(s) 1111
PkrI GCNGC 4 cut(s) 179, 832, 951, 964
PleI GAGTC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 873
PscI ACATGT 1 cut(s) 444
Psp124BI GAGCTC 2 cut(s) 204, 708
PspFI CCCAGC 1 cut(s) 833
PspPI GGNCC 1 cut(s) 745
PstNI CAGNNNCTG 2 cut(s) 78, 833
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 2 cut(s) 920, 1140
RsaNI GTAC 2 cut(s) 919, 1139
SacI GAGCTC 2 cut(s) 204, 708
SapI GCTCTTC 1 cut(s) 1148
SaqAI TTAA 6 cut(s) 135, 207, 332, 768, 869, 1094
SatI GCNGC 4 cut(s) 178, 831, 950, 963
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 1 cut(s) 745
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 1 cut(s) 873
SduI GDGCHC 4 cut(s) 204, 663, 708, 805
SfaNI GCATC 5 cut(s) 118, 256, 305, 448, 898
SinI GGWCC 1 cut(s) 745
SmlI CTYRAG 4 cut(s) 35, 503, 779, 926
SmoI CTYRAG 4 cut(s) 35, 503, 779, 926
Sse9I AATT 5 cut(s) 16, 92, 370, 608, 1116
SsiI CCGC 4 cut(s) 177, 315, 342, 616
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 2 cut(s) 204, 708
StyI CCWWGG 3 cut(s) 261, 635, 795
TaaI ACNGT 4 cut(s) 80, 648, 865, 973
TaqI TCGA 2 cut(s) 650, 702
TasI AATT 5 cut(s) 16, 92, 370, 608, 1116
TatI WGTACW 2 cut(s) 918, 1138
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 148, 365
Tru1I TTAA 6 cut(s) 135, 207, 332, 768, 869, 1094
Tru9I TTAA 6 cut(s) 135, 207, 332, 768, 869, 1094
TscAI CASTG 4 cut(s) 237, 486, 595, 868
TseFI GTSAC 3 cut(s) 67, 304, 621
TseI GCWGC 3 cut(s) 830, 949, 962
Tsp45I GTSAC 3 cut(s) 67, 304, 621
TspDTI ATGAA 6 cut(s) 42, 65, 140, 204, 569, 1100
TspRI CASTG 4 cut(s) 237, 486, 595, 868
VneI GTGCAC 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 745
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.