Rroxscaffold_3G00262350

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
56364158 .. 56366744
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262350.1

Sequence Viewer

Length: 1785 bp
ATGGCGGACGACGCTGAATTGAAATCCACCACTCTCCTCCCCGATGACCTGGAGCGGCCGCCGGAGGACTTGCAAGAAGTACTCGGAAAGATGTTCACCGAGGAAGCTCTGACCAGCAATACAATCAAGATGGTGGAGGGTTTGTTGAGGGATGGCTTTATGAACATGGGATTGGAGATTGGGGCCAAGGTTCAGGAGACCAATGAGGTGCCCAGGGTTGTCACCGAGACTGCGGTCATGGAGCACTACATCAATGCTGCCGGAGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTTGGTTTCAGGGGTGGAACCGAATGCCTACACATATGCCGTCATCATCAAGGCGCTTGCTGCTGCTGACCTTAAGAAGAACCCCAATTTCGTTGTTTATGCCAAGAATTATTTTGTGGAGATGTTGGACAGGGGAATGCAGCCGAATGAGGAGACTTATGAGGCAGTGTTGGAAGGCATTGGCCGCGCTGAGAGTAAGGCCGAGGCTGAGGAGGAGCGCAGGGAGTTTGTGGAGAATGTGAAAGCAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCCGAGGAGATGGCTAAAACTCCATCATTGAAGTCCGAGATGGATATGCTTAAGGAACATGTAATGAAGGTGTTTGAGGATGCCACCAGAGACTGTGAAGACGAGAATGCACGAGCAAGATTCAGACAGATTGGGGAGGACTATGAATCACTGAGCAAATGTGCATTCGACCTTTTTAATGCTTTGGTACGTAAAGGGCTCAATGAGGAAGCCAAAGAGCTCTTTAAGCCCCTGTTGGATACAGCCATACTGCCCGACGAGGCTGTCTTTCTCATCGTCATCCTTTTTAGCAAGACCAAGAGTGATGCTCTGAAGGTGTATGAGCATATGTTAGCTTATGGGATCACCCCCAGCTCCTGCACTTACAATTTACTCATAGCGACACTTTCTCTTGATCCCAATTTCATCGGTCATGCCAAGAAGTATTACCTGGAAATGTTGGATAAAGGTATGAAGCCCTGTTTGAGGACCAGCTTGGCTTTGTTCAACGGCATTGCTTGCCTGGAGTCATTGGAGAATGGTGAGGAGTTTCTTGAGCAGGTAAAGCCAAAGGGGGTCTTGCCTGATGTCGGTGAATGCCATTTCACTGAGCTAATGAAGGCATTGAAGTTGTATGATGATCTCCAAAAGAGAACCTCGGACAAAGATATTCAAGAAGTTATCTGCAGAGTCACATTAGATGGTTTCAAGAACCAGTCATCGAAAATGTTCTATGCTATGGTAGAAGATGGCAACGTAGGCGAGGCAATGGATCTCTTTCAGTCGACAGTTGAGAGTCGCATCAATCCCATGGTCATAGTTCACACTGCTGTTATTGAAGCCTACATCAAATGTAACAATAACAAGGGTGCTCTCCAGACCTACCTGGACATGTTAGCTACTGGACTTGCACCTAACTCCTACATTTACAGTGTTTTGATCAAGGGACTCTCTGTTGATGCAAACTACTTTGAAGATGCCAAGAAGTATTTGGTTGAGATGCAGGACAAGGGCATGCATCCAAATGTTGCTACATACACTGCAGTGTTAGAGGGTTTTGCAAGGCAGGAGGACAAGAAAGCTGAGGAAGAGGGAAAAGAGTCTCTGGAGGTCATGATGGCCAAGGGGTTTGTCCCTGATACCGAGGCTGTGAGGGAGGTGTTAAAGGGCAGACCAACACCTGTAATTAGCAGGGTCATGAGCATTATCCTTTCCAAGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

594

Amino Acids

66.72

Weight (kDa)

4.9

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 71 - 121 4.5e-09 PPR repeat family
PPR_long PF17177 442 - 565 9.3e-06 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 457 - 546 8.8e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 458 - 503 1.2e-07 PPR repeat family
PPR_2 PF13041 507 - 541 7.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 1343
AccII CGCG 1 cut(s) 489
AciI CCGC 5 cut(s) 5, 55, 59, 233, 487
AclWI GGATC 3 cut(s) 929, 968, 1338
AcoI YGGCCR 3 cut(s) 56, 484, 1677
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 2 cut(s) 81, 768
AfiI CCNNNNNNNGG 4 cut(s) 267, 577, 1044, 1148
AflII CTTAAG 2 cut(s) 374, 629
AflIII ACRYGT 3 cut(s) 300, 637, 1449
AgsI TTSAA 9 cut(s) 22, 295, 610, 1066, 1186, 1232, 1267, 1397, 1532
AjnI CCWGG 5 cut(s) 48, 212, 1008, 1080, 1443
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AleI CACNNNNGTG 1 cut(s) 1601
AluBI AGCT 8 cut(s) 107, 799, 914, 933, 1053, 1171, 1457, 1640
AluI AGCT 8 cut(s) 107, 799, 914, 933, 1053, 1171, 1457, 1640
Alw21I GWGCWC 4 cut(s) 246, 570, 801, 1432
Alw26I GTCTC 6 cut(s) 191, 221, 258, 449, 663, 1665
AlwI GGATC 3 cut(s) 929, 968, 1338
AlwNI CAGNNNCTG 2 cut(s) 672, 936
AoxI GGCC 6 cut(s) 56, 183, 484, 501, 579, 1677
ApeKI GCWGC 4 cut(s) 257, 362, 365, 442
Asp700I GAANNNNTTC 1 cut(s) 1286
AspLEI GCGC 3 cut(s) 358, 491, 522
AspS9I GGNCC 3 cut(s) 183, 270, 1047
AsuHPI GGTGA 5 cut(s) 88, 214, 916, 1112, 1163
AvaII GGWCC 2 cut(s) 270, 1047
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 1679
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 2 cut(s) 780, 801
BauI CACGAG 1 cut(s) 690
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 4 cut(s) 246, 570, 801, 1432
BbvCI CCTCAGC 2 cut(s) 510, 1641
BbvI GCAGC 4 cut(s) 244, 349, 352, 454
BccI CCATC 8 cut(s) 124, 146, 583, 610, 613, 1253, 1301, 1669
BceAI ACGGC 2 cut(s) 326, 1084
BciT130I CCWGG 5 cut(s) 50, 214, 1010, 1082, 1445
BciVI GTATCC 1 cut(s) 811
BclI TGATCA 1 cut(s) 1497
BcoDI GTCTC 6 cut(s) 191, 221, 258, 449, 663, 1665
BfmI CTRYAG 2 cut(s) 1243, 1599
BfoI RGCGCY 1 cut(s) 359
BfrI CTTAAG 2 cut(s) 374, 629
BfuAI ACCTGC 1 cut(s) 1108
BfuI GTATCC 1 cut(s) 811
BisI GCNGC 7 cut(s) 56, 59, 258, 363, 366, 443, 487
BlsI GCNGC 7 cut(s) 57, 60, 259, 364, 367, 444, 488
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 5 cut(s) 50, 214, 1010, 1082, 1445
Bme18I GGWCC 2 cut(s) 270, 1047
BmgT120I GGNCC 3 cut(s) 183, 270, 1047
BmiI GGNNCC 3 cut(s) 184, 210, 321
BmrFI CCNGG 5 cut(s) 50, 214, 1010, 1082, 1445
BmsI GCATC 8 cut(s) 268, 649, 874, 1368, 1507, 1525, 1548, 1585
BoxI GACNNNNGTC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 684
BplI GAGNNNNNCTC 2 cut(s) 871, 903
BpmI CTGGAG 5 cut(s) 71, 554, 1103, 1418, 1685
Bpu10I CCTNAGC 2 cut(s) 510, 1641
BpuEI CTTGAG 1 cut(s) 1133
BsaAI YACGTR 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 267, 577, 1044, 1148
Bse1I ACTGG 2 cut(s) 1273, 1465
Bse3DI GCAATG 2 cut(s) 1071, 1332
BseBI CCWGG 5 cut(s) 50, 214, 1010, 1082, 1445
BseGI GGATG 5 cut(s) 157, 283, 664, 858, 1576
BseLI CCNNNNNNNGG 4 cut(s) 267, 577, 1044, 1148
BseMI GCAATG 2 cut(s) 1071, 1332
BseMII CTCAG 6 cut(s) 298, 483, 501, 722, 1158, 1632
BseNI ACTGG 2 cut(s) 1273, 1465
BseRI GAGGAG 6 cut(s) 26, 467, 527, 530, 599, 1118
BseSI GKGCMC 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 244, 349, 352, 454
BseYI CCCAGC 1 cut(s) 929
BsgI GTGCAG 1 cut(s) 922
Bsh1236I CGCG 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 6 cut(s) 58, 185, 486, 503, 581, 1679
BshNI GGYRCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 4 cut(s) 246, 570, 801, 1432
BsiSI CCGG 2 cut(s) 62, 261
BslFI GGGAC 2 cut(s) 1518, 1676
BslI CCNNNNNNNGG 4 cut(s) 267, 577, 1044, 1148
BsmAI GTCTC 6 cut(s) 191, 221, 258, 449, 663, 1665
BsmFI GGGAC 2 cut(s) 1518, 1676
BsmI GAATGC 5 cut(s) 331, 444, 691, 743, 1160
BsnI GGCC 6 cut(s) 58, 185, 486, 503, 581, 1679
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 6 cut(s) 213, 246, 570, 780, 801, 1432
Bsp143I GATC 5 cut(s) 921, 973, 1198, 1330, 1497
Bsp19I CCATGG 1 cut(s) 1368
BspACI CCGC 5 cut(s) 5, 55, 59, 233, 487
BspANI GGCC 6 cut(s) 58, 185, 486, 503, 581, 1679
BspCNI CTCAG 6 cut(s) 297, 484, 502, 723, 1159, 1633
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 2 cut(s) 1671, 1755
BspLI GGNNCC 3 cut(s) 184, 210, 321
BspMAI CTGCAG 2 cut(s) 1247, 1603
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 3 cut(s) 929, 968, 1338
BspT107I GGYRCC 1 cut(s) 208
BspTI CTTAAG 2 cut(s) 374, 629
BspTNI GGTCTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 1071, 1332
BsrI ACTGG 2 cut(s) 1273, 1465
BssMI GATC 5 cut(s) 921, 973, 1198, 1330, 1497
BssSI CACGAG 1 cut(s) 690
BssT1I CCWWGG 4 cut(s) 186, 273, 1368, 1680
Bst2BI CACGAG 1 cut(s) 690
Bst2UI CCWGG 5 cut(s) 50, 214, 1010, 1082, 1445
Bst4CI ACNGT 3 cut(s) 674, 1348, 1490
Bst6I CTCTTC 1 cut(s) 1641
BstAFI CTTAAG 2 cut(s) 374, 629
BstAPI GCANNNNNTGC 1 cut(s) 1077
BstBAI YACGTR 1 cut(s) 770
BstC8I GCNNGC 3 cut(s) 360, 1078, 1574
BstDEI CTNAG 6 cut(s) 284, 492, 510, 731, 1167, 1641
BstDSI CCRYGG 1 cut(s) 1368
BstENI CCTNNNNNAGG 1 cut(s) 1042
BstF5I GGATG 5 cut(s) 157, 283, 664, 858, 1576
BstFNI CGCG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 3 cut(s) 358, 491, 522
BstKTI GATC 5 cut(s) 924, 976, 1201, 1333, 1500
BstMAI GTCTC 6 cut(s) 191, 221, 258, 449, 663, 1665
BstMBI GATC 5 cut(s) 921, 973, 1198, 1330, 1497
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 7 cut(s) 11, 362, 486, 805, 1077, 1123, 1317
BstNI CCWGG 5 cut(s) 50, 214, 1010, 1082, 1445
BstNSI RCATGY 4 cut(s) 304, 641, 1453, 1576
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 5 cut(s) 48, 212, 1008, 1080, 1443
BstSFI CTRYAG 2 cut(s) 1243, 1599
BstSLI GKGCMC 1 cut(s) 213
BstSNI TACGTA 1 cut(s) 770
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 4 cut(s) 244, 349, 352, 454
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 1330
BstZI CGGCCG 1 cut(s) 56
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 6 cut(s) 58, 185, 486, 503, 581, 1679
BtgI CCRYGG 1 cut(s) 1368
BtsCI GGATG 5 cut(s) 157, 283, 664, 858, 1576
BtsI GCAGTG 4 cut(s) 474, 1383, 1596, 1608
BtsIMutI CAGTG 7 cut(s) 474, 728, 1164, 1383, 1495, 1596, 1608
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 3 cut(s) 360, 1078, 1574
CaiI CAGNNNCTG 2 cut(s) 672, 936
CciI TCATGA 2 cut(s) 1671, 1755
CciNI GCGGCCGC 1 cut(s) 56
CfoI GCGC 3 cut(s) 358, 491, 522
Cfr13I GGNCC 3 cut(s) 183, 270, 1047
CseI GACGC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 80, 767
CviQI GTAC 2 cut(s) 80, 767
DdeI CTNAG 6 cut(s) 284, 492, 510, 731, 1167, 1641
DpnI GATC 5 cut(s) 923, 975, 1200, 1332, 1499
DpnII GATC 5 cut(s) 921, 973, 1198, 1330, 1497
DrdI GACNNNNNNGTC 1 cut(s) 842
DseDI GACNNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 3 cut(s) 56, 484, 1677
EagI CGGCCG 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 1641
EarI CTCTTC 1 cut(s) 1641
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 799
EclXI CGGCCG 1 cut(s) 56
Eco105I TACGTA 1 cut(s) 770
Eco130I CCWWGG 4 cut(s) 186, 273, 1368, 1680
Eco24I GRGCYC 2 cut(s) 780, 801
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 270, 1047
Eco52I CGGCCG 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 1042
EcoRII CCWGG 5 cut(s) 48, 212, 1008, 1080, 1443
EcoT14I CCWWGG 4 cut(s) 186, 273, 1368, 1680
EcoT22I ATGCAT 1 cut(s) 1578
EcoT38I GRGCYC 2 cut(s) 780, 801
ErhI CCWWGG 4 cut(s) 186, 273, 1368, 1680
FalI AAGNNNNNCTT 2 cut(s) 1121, 1153
FaqI GGGAC 2 cut(s) 1518, 1676
FauNDI CATATG 2 cut(s) 337, 906
FbaI TGATCA 1 cut(s) 1497
FblI GTMKAC 1 cut(s) 1343
Fnu4HI GCNGC 7 cut(s) 56, 59, 258, 363, 366, 443, 487
FokI GGATG 5 cut(s) 164, 290, 671, 845, 1563
FriOI GRGCYC 2 cut(s) 780, 801
Fsp4HI GCNGC 7 cut(s) 56, 59, 258, 363, 366, 443, 487
GlaI GCGC 3 cut(s) 357, 490, 521
GluI GCNGC 7 cut(s) 56, 59, 258, 363, 366, 443, 487
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 5 cut(s) 71, 554, 1103, 1418, 1685
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 6 cut(s) 58, 185, 486, 503, 581, 1679
HapII CCGG 2 cut(s) 62, 261
HgaI GACGC 1 cut(s) 20
HhaI GCGC 3 cut(s) 358, 491, 522
Hin6I GCGC 3 cut(s) 356, 489, 520
HinP1I GCGC 3 cut(s) 356, 489, 520
HincII GTYRAC 1 cut(s) 1344
HindII GTYRAC 1 cut(s) 1344
HinfI GANTC 7 cut(s) 699, 725, 1085, 1248, 1354, 1506, 1658
HpaII CCGG 2 cut(s) 62, 261
HphI GGTGA 5 cut(s) 88, 214, 916, 1112, 1163
Hpy166II GTNNAC 3 cut(s) 96, 1344, 1381
Hpy188I TCNGA 7 cut(s) 86, 111, 287, 616, 704, 891, 1219
Hpy8I GTNNAC 3 cut(s) 96, 1344, 1381
Hpy99I CGWCG 2 cut(s) 14, 839
HpyAV CCTTC 5 cut(s) 470, 568, 640, 886, 1171
HpyCH4III ACNGT 3 cut(s) 674, 1348, 1490
HpyCH4IV ACGT 2 cut(s) 769, 1314
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 362, 486, 805, 1077, 1123, 1317
HpyF3I CTNAG 6 cut(s) 284, 492, 510, 731, 1167, 1641
HpySE526I ACGT 2 cut(s) 769, 1314
HspAI GCGC 3 cut(s) 356, 489, 520
Ksp22I TGATCA 1 cut(s) 1497
Kzo9I GATC 5 cut(s) 921, 973, 1198, 1330, 1497
LmnI GCTCC 5 cut(s) 52, 241, 517, 573, 938
Lsp1109I GCAGC 4 cut(s) 244, 349, 352, 454
LweI GCATC 8 cut(s) 268, 649, 874, 1368, 1507, 1525, 1548, 1585
MaeII ACGT 2 cut(s) 769, 1314
MaeIII GTNAC 3 cut(s) 220, 1249, 1412
MalI GATC 5 cut(s) 923, 975, 1200, 1332, 1499
MbiI CCGCTC 1 cut(s) 55
MboI GATC 5 cut(s) 921, 973, 1198, 1330, 1497
MboII GAAGA 5 cut(s) 391, 689, 1316, 1544, 1658
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 6 cut(s) 213, 246, 570, 780, 801, 1432
MlsI TGGCCA 1 cut(s) 1679
MluCI AATT 6 cut(s) 17, 388, 409, 946, 979, 1743
MluNI TGGCCA 1 cut(s) 1679
MlyI GAGTC 5 cut(s) 1094, 1257, 1363, 1500, 1667
MmeI TCCRAC 5 cut(s) 408, 453, 795, 999, 1758
Mox20I TGGCCA 1 cut(s) 1679
Mph1103I ATGCAT 1 cut(s) 1578
MroXI GAANNNNTTC 1 cut(s) 1286
MscI TGGCCA 1 cut(s) 1679
MseI TTAA 5 cut(s) 375, 630, 756, 804, 1721
MslI CAYNNNNRTG 2 cut(s) 1581, 1601
Msp20I TGGCCA 1 cut(s) 1679
MspCI CTTAAG 2 cut(s) 374, 629
MspI CCGG 2 cut(s) 62, 261
MspR9I CCNGG 5 cut(s) 50, 214, 1010, 1082, 1445
Mva1269I GAATGC 5 cut(s) 331, 444, 691, 743, 1160
MvaI CCWGG 5 cut(s) 50, 214, 1010, 1082, 1445
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 7 cut(s) 11, 362, 486, 805, 1077, 1123, 1317
NcoI CCATGG 1 cut(s) 1368
NdeI CATATG 2 cut(s) 337, 906
NdeII GATC 5 cut(s) 921, 973, 1198, 1330, 1497
NlaIV GGNNCC 3 cut(s) 184, 210, 321
NmeAIII GCCGAG 2 cut(s) 529, 607
NmuCI GTSAC 2 cut(s) 220, 1249
NotI GCGGCCGC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 1578
NspI RCATGY 4 cut(s) 304, 641, 1453, 1576
OliI CACNNNNGTG 1 cut(s) 1601
PaeI GCATGC 1 cut(s) 1576
PagI TCATGA 2 cut(s) 1671, 1755
PasI CCCWGGG 1 cut(s) 213
PciI ACATGT 3 cut(s) 300, 637, 1449
PctI GAATGC 5 cut(s) 331, 444, 691, 743, 1160
PdmI GAANNNNTTC 1 cut(s) 1286
PfeI GAWTC 2 cut(s) 699, 725
PkrI GCNGC 7 cut(s) 57, 60, 259, 364, 367, 444, 488
PleI GAGTC 5 cut(s) 1093, 1256, 1362, 1500, 1666
PpsI GAGTC 5 cut(s) 1093, 1256, 1362, 1500, 1666
Ppu21I YACGTR 1 cut(s) 770
PscI ACATGT 3 cut(s) 300, 637, 1449
PshAI GACNNNNGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 5 cut(s) 48, 212, 1008, 1080, 1443
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 5 cut(s) 48, 212, 1008, 1080, 1443
PspN4I GGNNCC 3 cut(s) 184, 210, 321
PspPI GGNCC 3 cut(s) 183, 270, 1047
PstI CTGCAG 2 cut(s) 1247, 1603
PstNI CAGNNNCTG 2 cut(s) 672, 936
PsuI RGATCY 1 cut(s) 1330
RsaI GTAC 2 cut(s) 81, 768
RsaNI GTAC 2 cut(s) 80, 767
RseI CAYNNNNRTG 2 cut(s) 1581, 1601
SacI GAGCTC 1 cut(s) 801
SalI GTCGAC 1 cut(s) 1342
SaqAI TTAA 5 cut(s) 375, 630, 756, 804, 1721
SatI GCNGC 7 cut(s) 56, 59, 258, 363, 366, 443, 487
Sau3AI GATC 5 cut(s) 921, 973, 1198, 1330, 1497
Sau96I GGNCC 3 cut(s) 183, 270, 1047
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 5 cut(s) 1094, 1257, 1363, 1500, 1667
ScrFI CCNGG 5 cut(s) 50, 214, 1010, 1082, 1445
SduI GDGCHC 6 cut(s) 213, 246, 570, 780, 801, 1432
SfaNI GCATC 8 cut(s) 268, 649, 874, 1368, 1507, 1525, 1548, 1585
SfcI CTRYAG 2 cut(s) 1243, 1599
SinI GGWCC 2 cut(s) 270, 1047
SmiMI CAYNNNNRTG 2 cut(s) 1581, 1601
SmlI CTYRAG 3 cut(s) 374, 629, 1112
SmoI CTYRAG 3 cut(s) 374, 629, 1112
SnaBI TACGTA 1 cut(s) 770
SphI GCATGC 1 cut(s) 1576
Sse9I AATT 6 cut(s) 17, 388, 409, 946, 979, 1743
SsiI CCGC 5 cut(s) 5, 55, 59, 233, 487
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 5 cut(s) 48, 212, 1008, 1080, 1443
StyI CCWWGG 4 cut(s) 186, 273, 1368, 1680
TaaI ACNGT 3 cut(s) 674, 1348, 1490
TaiI ACGT 2 cut(s) 772, 1317
TaqI TCGA 3 cut(s) 747, 1280, 1343
TaqII GACCGA 1 cut(s) 977
TasI AATT 6 cut(s) 17, 388, 409, 946, 979, 1743
TatI WGTACW 1 cut(s) 79
TauI GCSGC 3 cut(s) 58, 61, 489
TfiI GAWTC 2 cut(s) 699, 725
Tru1I TTAA 5 cut(s) 375, 630, 756, 804, 1721
Tru9I TTAA 5 cut(s) 375, 630, 756, 804, 1721
TscAI CASTG 7 cut(s) 474, 735, 1171, 1390, 1495, 1603, 1608
TseFI GTSAC 2 cut(s) 220, 1249
TseI GCWGC 4 cut(s) 257, 362, 365, 442
Tsp45I GTSAC 2 cut(s) 220, 1249
TspDTI ATGAA 6 cut(s) 176, 659, 738, 973, 1046, 1190
TspRI CASTG 7 cut(s) 474, 735, 1171, 1390, 1495, 1603, 1608
Vha464I CTTAAG 2 cut(s) 374, 629
VpaK11BI GGWCC 2 cut(s) 270, 1047
XagI CCTNNNNNAGG 1 cut(s) 1042
XceI RCATGY 4 cut(s) 304, 641, 1453, 1576
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XmiI GTMKAC 1 cut(s) 1343
XmnI GAANNNNTTC 1 cut(s) 1286
ZrmI AGTACT 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.