Rroxscaffold_3G00225600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8877011 .. 8891922
14912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225600.1

Sequence Viewer

Length: 2019 bp
ATGGCGGCCCAATTTGAAGAGCAGTTGGATCGTGCCAAAGGAGGAAAAACGAAAATGGAAGCCTTGGGTATCAAGCATCTCTTGCCAGCATATCTTGACCCAAACCTACGCTCTGAAGATCTCCCAACTGGTGTATGCTTTGCTTCTGGCAATTCCGGTTATGATCCTCTAACACCATCTCTAGTGGATTTATATAGCCTTGGGGCACGACGAATTGCTATTATAAGTGCATTCCCAGTGGGATGCGCACCATTGGAAAGAAATGGAGGAGGATTACTAGGAGAGTGTTTAGAGTTGCAAAACCAAAGAGCAAACATGTTCAACTCTCTATTATCATCCGAATTAGATACCATCAACAGGGACTTCCCTGACGCGAAGCTAGTTTTTCTTGATGTCTACCACCCTTTTCTTGAACTCAATCAACACCCTGAAAACTCAGGATTCGAAGTCTTGAGGATTGGGTGTTGTGGTACTGGAACATTTGAAGTGACATCGTTTTTATGTAACCCATGGAATCCATTCACATGTTCAAATGCATCTAATTATCTATACTGGGATGCAATTCATCCCAGCGAACGAGCTCAAAGAATCGTCGCTTCTCAAACTCTCAAATTGATCACGAAATTTCAATACATCGGCATAGTCGACGACAGTATAGATTCCAAGCCGTTGCATAACAACCGAAAAGCGCTCGAAAAGGGAGACATCAATCAATCACGGAACTCCACAAGGGACACATTTTTACAATCCACAATTCACGACCCACACTTGGGAACAGTCAAATCAATGGCGGATACTAGTTCCCCCAATTCTTCTGCCGATGACCTAAAGAAACATGCAATGAGGGTTTTCAAGGAGGCGACCAAAGACTGTGGGGACATTGTCTTTGAAATAAAATTTGACATGATTCGGGACTATGAATCCCTTCATCAATATGCAGTTGATTTGTTCAAATCTATAGCAAATACCGGCCTGGTTGACTTCCCCGAAGAACTTAAGGCTCTCTCTGAGGCGGCCATACTGTCCGATGTGGCTGTACACACCATTGTCATGGGGGAATACTTCACTGCCAGAAAGACCAAGGCTGCTCTCAAGGCCTTTCAGCACATGATAGCCACTGGTGTCGCCCCCAAATCCTGCAGTTACAGCTTGCTCATCACGGCCCTTGCATTAGACTTTTCTGATCCCAATTTTCTTGTGAATGCCAAGAAGTACTTTATGGAAATGTTGGTTAGGGGATTCAAGCCCAATTCTGGGTCCTACATGTTAGTGTTGGATGCCATTTCCTGCCGGGAGTCGGAGGGGAAGGCCAGGGAGTTCCTTGAACAGATCAAAGCCAAGGGGTTTGTCCCTGCACGTAATCTTTATCAATTTGAAGTAGTTCACGCCATAGAAGCGATGAGTGCAATGAAGATGTATGATGATCTGGAGGACAGCATAACTGATGAGGACATGCAAAAGGTCTTCTCAGAGTGGCGCACCAACCACGATCTCCTCACCAAAGAGTCGATGAAGATGTACACGGCTTTGATAGAGGATGACAATGTAGAGCAGGCAATGGAGATCTTTAGGGTCAATGCTGAGAGGGGCATACTTCCCATTGTTGTAGTCCACACCTGTGTTATTGAAGCCTACTTCAGTTTTGGCAAGACCAAGGATGCTCTGGAGGCATATCAGGGGATGTTAGCTGCTGGGGTTGCCCCAAATTGCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTCATTGGAGATGCCAAGAAGTGCTTGCTTGATATGATGGACAGGGGGATGAGGCCCAATGCTGCTACCTACACTGCAGTGTTAGAGGGTTTTGCAAGGAAGGAGGACAAGGAAGCTGAGGAGGAGGGAAAAGAGCTGGTGAAGGTGATGATTCGTAAGGGGCATGGGCCAAAGGCAAAGGCTATGATGGAGGTTTTGAAAGGCAGCCCAACACCTCTAATAAGAAGGGTCCTGGACATCACCTTTTCCAAGTTGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

672

Amino Acids

74.87

Weight (kDa)

5.65

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 62 - 200 5.3e-09 GDSL-like Lipase/Acylhydrolase
TPR_24 PF23276 519 - 623 3.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 535 - 580 2.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
Acc16I TGCGCA 1 cut(s) 247
AccI GTMKAC 2 cut(s) 396, 645
AccII CGCG 1 cut(s) 374
AciI CCGC 3 cut(s) 5, 791, 1013
AclWI GGATC 3 cut(s) 36, 158, 1178
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 2 cut(s) 623, 896
AcuI CTGAAG 2 cut(s) 135, 1621
AfaI GTAC 4 cut(s) 472, 1038, 1214, 1520
AfeI AGCGCT 1 cut(s) 690
AfiI CCNNNNNNNGG 6 cut(s) 357, 769, 770, 1253, 1254, 1297
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 3 cut(s) 315, 524, 1263
AhlI ACTAGT 1 cut(s) 797
AjnI CCWGG 3 cut(s) 972, 1310, 1986
AleI CACNNNNGTG 2 cut(s) 1617, 1832
AluBI AGCT 6 cut(s) 379, 581, 1149, 1688, 1871, 1891
AluI AGCT 6 cut(s) 379, 581, 1149, 1688, 1871, 1891
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 696
AlwI GGATC 3 cut(s) 36, 158, 1178
Aor51HI AGCGCT 1 cut(s) 690
AoxI GGCC 8 cut(s) 6, 970, 1014, 1095, 1161, 1308, 1808, 1922
ApeKI GCWGC 4 cut(s) 1085, 1688, 1817, 1959
ApoI RAATTY 2 cut(s) 623, 896
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
Asp700I GAANNNNTTC 3 cut(s) 518, 924, 1380
AspLEI GCGC 3 cut(s) 248, 691, 1479
AspS9I GGNCC 6 cut(s) 7, 1162, 1257, 1809, 1922, 1984
AsuC2I CCSGG 1 cut(s) 1292
AsuHPI GGTGA 4 cut(s) 1489, 1906, 1912, 1987
AsuII TTCGAA 1 cut(s) 444
AvaII GGWCC 2 cut(s) 1257, 1984
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 1456
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 1 cut(s) 1872
BbvI GCAGC 4 cut(s) 1072, 1675, 1804, 1971
BccI CCATC 4 cut(s) 184, 359, 1786, 1936
BceAI ACGGC 3 cut(s) 652, 1176, 1539
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 974, 1312, 1988
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 1 cut(s) 1292
BcoDI GTCTC 1 cut(s) 696
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 4 cut(s) 182, 278, 380, 798
BfmI CTRYAG 3 cut(s) 957, 1138, 1830
BfoI RGCGCY 1 cut(s) 692
BfrI CTTAAG 1 cut(s) 995
BfuI GTATCC 1 cut(s) 787
BglII AGATCT 2 cut(s) 118, 1563
BisI GCNGC 6 cut(s) 6, 1014, 1086, 1689, 1818, 1960
BlsI GCNGC 6 cut(s) 7, 1015, 1087, 1690, 1819, 1961
BmcAI AGTACT 1 cut(s) 1214
Bme1390I CCNGG 4 cut(s) 974, 1292, 1312, 1988
Bme18I GGWCC 2 cut(s) 1257, 1984
BmgT120I GGNCC 6 cut(s) 7, 1162, 1257, 1809, 1922, 1984
BmiI GGNNCC 2 cut(s) 1258, 1985
BmrFI CCNGG 4 cut(s) 974, 1292, 1312, 1988
BmrI ACTGGG 2 cut(s) 230, 562
BmsI GCATC 7 cut(s) 85, 233, 545, 547, 1267, 1648, 1756
BmuI ACTGGG 2 cut(s) 230, 562
BpiI GAAGAC 1 cut(s) 1456
BpmI CTGGAG 2 cut(s) 1448, 1685
Bpu10I CCTNAGC 1 cut(s) 1872
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 472, 1076
BpuMI CCSGG 1 cut(s) 1292
BsaAI YACGTR 1 cut(s) 1358
BsaJI CCNNGG 7 cut(s) 63, 199, 509, 1080, 1311, 1338, 1653
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 6 cut(s) 357, 769, 770, 1253, 1254, 1297
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 5 cut(s) 133, 236, 478, 557, 1123
Bse3DI GCAATG 3 cut(s) 846, 1413, 1563
BseBI CCWGG 3 cut(s) 974, 1312, 1988
BseDI CCNNGG 7 cut(s) 63, 199, 509, 1080, 1311, 1338, 1653
BseGI GGATG 9 cut(s) 248, 335, 562, 565, 1282, 1543, 1663, 1686, 1809
BseLI CCNNNNNNNGG 6 cut(s) 357, 769, 770, 1253, 1254, 1297
BseMI GCAATG 3 cut(s) 846, 1413, 1563
BseMII CTCAG 5 cut(s) 450, 999, 1482, 1572, 1863
BseNI ACTGG 5 cut(s) 133, 236, 478, 557, 1123
BseRI GAGGAG 4 cut(s) 282, 1484, 1889, 1892
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 4 cut(s) 1072, 1675, 1804, 1971
BseYI CCCAGC 2 cut(s) 569, 1691
BsgI GTGCAG 1 cut(s) 1338
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 8 cut(s) 8, 972, 1016, 1097, 1163, 1310, 1810, 1924
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 3 cut(s) 156, 969, 1291
BslFI GGGAC 6 cut(s) 374, 746, 890, 926, 1334, 1749
BslI CCNNNNNNNGG 6 cut(s) 357, 769, 770, 1253, 1254, 1297
BsmAI GTCTC 1 cut(s) 696
BsmFI GGGAC 6 cut(s) 374, 746, 890, 926, 1334, 1749
BsmI GAATGC 2 cut(s) 230, 1207
BsnI GGCC 8 cut(s) 8, 972, 1016, 1097, 1163, 1310, 1810, 1924
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 208, 583
Bsp1407I TGTACA 2 cut(s) 1036, 1518
Bsp143I GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 3 cut(s) 5, 791, 1013
BspANI GGCC 8 cut(s) 8, 972, 1016, 1097, 1163, 1310, 1810, 1924
BspCNI CTCAG 5 cut(s) 449, 1000, 1481, 1573, 1864
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 1258, 1985
BspMAI CTGCAG 2 cut(s) 1142, 1834
BspPI GGATC 3 cut(s) 36, 158, 1178
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 3 cut(s) 846, 1413, 1563
BsrFI RCCGGY 1 cut(s) 968
BsrGI TGTACA 2 cut(s) 1036, 1518
BsrI ACTGG 5 cut(s) 133, 236, 478, 557, 1123
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 7 cut(s) 63, 199, 509, 1080, 1311, 1338, 1653
BssMI GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
BssT1I CCWWGG 6 cut(s) 63, 199, 509, 1080, 1338, 1653
Bst2UI CCWGG 3 cut(s) 974, 1312, 1988
Bst4CI ACNGT 5 cut(s) 653, 778, 872, 1023, 1723
Bst6I CTCTTC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 82
BstAUI TGTACA 2 cut(s) 1036, 1518
BstBAI YACGTR 1 cut(s) 1358
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 4 cut(s) 87, 1151, 1554, 1781
BstDEI CTNAG 5 cut(s) 436, 1008, 1468, 1581, 1872
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 9 cut(s) 248, 335, 562, 565, 1282, 1543, 1663, 1686, 1809
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 3 cut(s) 248, 691, 1479
BstKTI GATC 9 cut(s) 31, 121, 166, 618, 1186, 1332, 1426, 1492, 1566
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
BstMWI GCNNNNNNNGC 7 cut(s) 82, 1094, 1146, 1394, 1403, 1667, 1697
BstNI CCWGG 3 cut(s) 974, 1312, 1988
BstNSI RCATGY 5 cut(s) 319, 528, 839, 1267, 1456
BstSCI CCNGG 4 cut(s) 972, 1290, 1310, 1986
BstSFI CTRYAG 3 cut(s) 957, 1138, 1830
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 1072, 1675, 1804, 1971
BstV2I GAAGAC 1 cut(s) 1456
BstX2I RGATCY 2 cut(s) 118, 1563
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 2 cut(s) 118, 1563
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 8 cut(s) 8, 972, 1016, 1097, 1163, 1310, 1810, 1924
BtgI CCRYGG 1 cut(s) 509
BtgZI GCGATG 1 cut(s) 1412
BtsCI GGATG 9 cut(s) 248, 335, 562, 565, 1282, 1543, 1663, 1686, 1809
BtsI GCAGTG 4 cut(s) 1065, 1740, 1827, 1839
BtsIMutI CAGTG 7 cut(s) 243, 1065, 1116, 1719, 1740, 1827, 1839
Cac8I GCNNGC 4 cut(s) 87, 1151, 1554, 1781
CfoI GCGC 3 cut(s) 248, 691, 1479
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 6 cut(s) 7, 1162, 1257, 1809, 1922, 1984
CseI GACGC 1 cut(s) 380
Csp6I GTAC 4 cut(s) 471, 1037, 1213, 1519
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviQI GTAC 4 cut(s) 471, 1037, 1213, 1519
DdeI CTNAG 5 cut(s) 436, 1008, 1468, 1581, 1872
DpnI GATC 9 cut(s) 30, 120, 165, 617, 1185, 1331, 1425, 1491, 1565
DpnII GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
EaeI YGGCCR 1 cut(s) 1014
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 806
Ecl136II GAGCTC 1 cut(s) 581
Eco130I CCWWGG 6 cut(s) 63, 199, 509, 1080, 1338, 1653
Eco147I AGGCCT 1 cut(s) 1097
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 1257, 1984
Eco47III AGCGCT 1 cut(s) 690
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 135, 1621
EcoICRI GAGCTC 1 cut(s) 581
EcoO109I RGGNCCY 2 cut(s) 1257, 1984
EcoRII CCWGG 3 cut(s) 972, 1310, 1986
EcoT14I CCWWGG 6 cut(s) 63, 199, 509, 1080, 1338, 1653
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 6 cut(s) 63, 199, 509, 1080, 1338, 1653
FalI AAGNNNNNCTT 6 cut(s) 65, 97, 1199, 1231, 1763, 1795
FaqI GGGAC 6 cut(s) 374, 746, 890, 926, 1334, 1749
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 2 cut(s) 396, 645
Fnu4HI GCNGC 6 cut(s) 6, 1014, 1086, 1689, 1818, 1960
FokI GGATG 9 cut(s) 255, 322, 552, 569, 1289, 1550, 1670, 1693, 1816
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 6 cut(s) 6, 1014, 1086, 1689, 1818, 1960
FspAI RTGCGCAY 1 cut(s) 247
FspBI CTAG 4 cut(s) 182, 278, 380, 798
FspI TGCGCA 1 cut(s) 247
GlaI GCGC 3 cut(s) 247, 690, 1478
GluI GCNGC 6 cut(s) 6, 1014, 1086, 1689, 1818, 1960
GsaI CCCAGC 2 cut(s) 573, 1695
GsuI CTGGAG 2 cut(s) 1448, 1685
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 8 cut(s) 8, 972, 1016, 1097, 1163, 1310, 1810, 1924
HapII CCGG 3 cut(s) 156, 969, 1291
HgaI GACGC 1 cut(s) 380
HhaI GCGC 3 cut(s) 248, 691, 1479
Hin6I GCGC 3 cut(s) 246, 689, 1477
HinP1I GCGC 3 cut(s) 246, 689, 1477
HincII GTYRAC 2 cut(s) 646, 979
HindII GTYRAC 2 cut(s) 646, 979
HpaII CCGG 3 cut(s) 156, 969, 1291
HphI GGTGA 4 cut(s) 1489, 1906, 1912, 1987
Hpy166II GTNNAC 7 cut(s) 397, 646, 979, 1039, 1384, 1521, 1612
Hpy188I TCNGA 7 cut(s) 115, 340, 1009, 1027, 1183, 1300, 1471
Hpy8I GTNNAC 7 cut(s) 397, 646, 979, 1039, 1384, 1521, 1612
Hpy99I CGWCG 3 cut(s) 213, 596, 650
HpyAV CCTTC 6 cut(s) 935, 1300, 1849, 1891, 1974, 2005
HpyCH4III ACNGT 5 cut(s) 653, 778, 872, 1023, 1723
HpyCH4IV ACGT 1 cut(s) 1357
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 1094, 1146, 1394, 1403, 1667, 1697
HpyF3I CTNAG 5 cut(s) 436, 1008, 1468, 1581, 1872
HpySE526I ACGT 1 cut(s) 1357
HspAI GCGC 3 cut(s) 246, 689, 1477
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
LguI GCTCTTC 1 cut(s) 12
Lsp1109I GCAGC 4 cut(s) 1072, 1675, 1804, 1971
LweI GCATC 7 cut(s) 85, 233, 545, 547, 1267, 1648, 1756
MaeI CTAG 4 cut(s) 182, 278, 380, 798
MaeII ACGT 1 cut(s) 1357
MaeIII GTNAC 3 cut(s) 487, 503, 1142
MalI GATC 9 cut(s) 30, 120, 165, 617, 1185, 1331, 1425, 1491, 1565
MboI GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
MboII GAAGA 7 cut(s) 29, 128, 804, 1001, 1423, 1456, 1525
MflI RGATCY 2 cut(s) 118, 1563
MhlI GDGCHC 2 cut(s) 208, 583
MlyI GAGTC 3 cut(s) 1304, 1514, 1731
MmeI TCCRAC 3 cut(s) 6, 1254, 1278
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 3 cut(s) 518, 924, 1380
MseI TTAA 2 cut(s) 996, 1727
MslI CAYNNNNRTG 6 cut(s) 523, 933, 1049, 1268, 1617, 1832
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 3 cut(s) 156, 969, 1291
MspR9I CCNGG 4 cut(s) 974, 1292, 1312, 1988
Mva1269I GAATGC 2 cut(s) 230, 1207
MvaI CCWGG 3 cut(s) 974, 1312, 1988
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 7 cut(s) 82, 1094, 1146, 1394, 1403, 1667, 1697
NciI CCSGG 1 cut(s) 1292
NcoI CCATGG 1 cut(s) 509
NdeII GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
NlaIV GGNNCC 2 cut(s) 1258, 1985
NmuCI GTSAC 1 cut(s) 487
NsbI TGCGCA 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 5 cut(s) 319, 528, 839, 1267, 1456
NspV TTCGAA 1 cut(s) 444
OliI CACNNNNGTG 2 cut(s) 1617, 1832
PceI AGGCCT 1 cut(s) 1097
PciI ACATGT 3 cut(s) 315, 524, 1263
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 2 cut(s) 230, 1207
PdmI GAANNNNTTC 3 cut(s) 518, 924, 1380
PfeI GAWTC 8 cut(s) 441, 514, 588, 659, 907, 920, 1239, 1906
PflFI GACNNNGTC 1 cut(s) 881
PfoI TCCNGGA 1 cut(s) 1986
PkrI GCNGC 6 cut(s) 7, 1015, 1087, 1690, 1819, 1961
PleI GAGTC 3 cut(s) 1303, 1513, 1731
PpsI GAGTC 3 cut(s) 1303, 1513, 1731
Ppu21I YACGTR 1 cut(s) 1358
PpuMI RGGWCCY 2 cut(s) 1257, 1984
PscI ACATGT 3 cut(s) 315, 524, 1263
PsiI TTATAA 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 583
Psp5II RGGWCCY 2 cut(s) 1257, 1984
Psp6I CCWGG 3 cut(s) 972, 1310, 1986
PspFI CCCAGC 2 cut(s) 569, 1691
PspGI CCWGG 3 cut(s) 972, 1310, 1986
PspN4I GGNNCC 2 cut(s) 1258, 1985
PspPI GGNCC 6 cut(s) 7, 1162, 1257, 1809, 1922, 1984
PspPPI RGGWCCY 2 cut(s) 1257, 1984
PstI CTGCAG 2 cut(s) 1142, 1834
PsuI RGATCY 2 cut(s) 118, 1563
PsyI GACNNNGTC 1 cut(s) 881
RsaI GTAC 4 cut(s) 472, 1038, 1214, 1520
RsaNI GTAC 4 cut(s) 471, 1037, 1213, 1519
RseI CAYNNNNRTG 6 cut(s) 523, 933, 1049, 1268, 1617, 1832
SacI GAGCTC 1 cut(s) 583
SalI GTCGAC 1 cut(s) 644
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 996, 1727
SatI GCNGC 6 cut(s) 6, 1014, 1086, 1689, 1818, 1960
Sau3AI GATC 9 cut(s) 28, 118, 163, 615, 1183, 1329, 1423, 1489, 1563
Sau96I GGNCC 6 cut(s) 7, 1162, 1257, 1809, 1922, 1984
ScaI AGTACT 1 cut(s) 1214
SchI GAGTC 3 cut(s) 1304, 1514, 1731
ScrFI CCNGG 4 cut(s) 974, 1292, 1312, 1988
SduI GDGCHC 2 cut(s) 208, 583
SfaNI GCATC 7 cut(s) 85, 233, 545, 547, 1267, 1648, 1756
SfcI CTRYAG 3 cut(s) 957, 1138, 1830
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 1257, 1984
SmiMI CAYNNNNRTG 6 cut(s) 523, 933, 1049, 1268, 1617, 1832
SmlI CTYRAG 3 cut(s) 451, 995, 1091
SmoI CTYRAG 3 cut(s) 451, 995, 1091
SpeI ACTAGT 1 cut(s) 797
SseBI AGGCCT 1 cut(s) 1097
SsiI CCGC 3 cut(s) 5, 791, 1013
SspMI CTAG 4 cut(s) 182, 278, 380, 798
SstI GAGCTC 1 cut(s) 583
StuI AGGCCT 1 cut(s) 1097
StyD4I CCNGG 4 cut(s) 972, 1290, 1310, 1986
StyI CCWWGG 6 cut(s) 63, 199, 509, 1080, 1338, 1653
TaaI ACNGT 5 cut(s) 653, 778, 872, 1023, 1723
TaiI ACGT 1 cut(s) 1360
TaqI TCGA 4 cut(s) 444, 645, 693, 1508
TatI WGTACW 3 cut(s) 1036, 1212, 1518
TauI GCSGC 2 cut(s) 8, 1016
TfiI GAWTC 8 cut(s) 441, 514, 588, 659, 907, 920, 1239, 1906
Tru1I TTAA 2 cut(s) 996, 1727
Tru9I TTAA 2 cut(s) 996, 1727
TscAI CASTG 7 cut(s) 243, 1072, 1123, 1726, 1747, 1834, 1839
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 4 cut(s) 1085, 1688, 1817, 1959
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 6 cut(s) 554, 917, 933, 1424, 1526, 1747
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 7 cut(s) 243, 1072, 1123, 1726, 1747, 1834, 1839
Tth111I GACNNNGTC 1 cut(s) 881
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 1257, 1984
XapI RAATTY 2 cut(s) 623, 896
XceI RCATGY 5 cut(s) 319, 528, 839, 1267, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 1660
XmiI GTMKAC 2 cut(s) 396, 645
XmnI GAANNNNTTC 3 cut(s) 518, 924, 1380
XspI CTAG 4 cut(s) 182, 278, 380, 798
ZrmI AGTACT 1 cut(s) 1214
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.