Rorug07G0293400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28675508 .. 28676233
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0293400.1

Sequence Viewer

Length: 438 bp
ATGCAAGCAATCGCGAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATAAGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAATCTTTCTTCCATAACAACCCGAGGAACTTCATAGAATTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTTCATTCAAGCTTCCGGGCCACGCAAGGCGGCCTATCCCTGAATATGGATGTGTCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGATTAAGGCTAAGAGGATGCTAAAAAATCTAAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCACTGGATTGAGCGATAAAGCCTGCAAACAGCAGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

9.67

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL1 PF08699 39 - 88 1.4e-19 Argonaute linker 1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 280
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 49, 235
AgsI TTSAA 2 cut(s) 198, 280
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 113, 362
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 207, 220
ApeKI GCWGC 2 cut(s) 92, 180
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 207, 269
AsuC2I CCSGG 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 104, 167
BccI CCATC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 113, 362
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 3 cut(s) 93, 181, 220
BlsI GCNGC 3 cut(s) 94, 182, 221
Bme1390I CCNGG 2 cut(s) 206, 267
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 207, 269
BmrFI CCNGG 2 cut(s) 206, 267
BmsI GCATC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 235
Bse1I ACTGG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 244, 351
BseLI CCNNNNNNNGG 2 cut(s) 49, 235
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 104, 167
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 209, 222
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 49, 235
BsmAI GTCTC 2 cut(s) 113, 362
BsmI GAATGC 2 cut(s) 22, 94
BsnI GGCC 2 cut(s) 209, 222
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 142
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 209, 222
BspFNI CGCG 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 6, 421
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 244, 351
BstFNI CGCG 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 113, 362
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 204, 265
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 104, 167
BsuRI GGCC 2 cut(s) 209, 222
BtsCI GGATG 2 cut(s) 244, 351
BtsIMutI CAGTG 1 cut(s) 399
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 6, 421
Cfr13I GGNCC 2 cut(s) 207, 269
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 289
CviJI RGCY 6 cut(s) 180, 201, 209, 222, 338, 419
CviKI_1 RGCY 6 cut(s) 180, 201, 209, 222, 338, 419
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 292
FaiI YATR 6 cut(s) 80, 135, 155, 236, 290, 375
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 93, 181, 220
FokI GGATG 2 cut(s) 251, 358
Fsp4HI GCNGC 3 cut(s) 93, 181, 220
GluI GCNGC 3 cut(s) 93, 181, 220
HaeIII GGCC 2 cut(s) 209, 222
HapII CCGG 1 cut(s) 205
Hin1II CATG 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 4 cut(s) 13, 32, 50, 68
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 4, 92, 183, 423
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 104, 167
LweI GCATC 1 cut(s) 336
MabI ACCWGGT 1 cut(s) 265
MaeII ACGT 1 cut(s) 434
MboII GAAGA 1 cut(s) 121
MluCI AATT 2 cut(s) 158, 280
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 6 cut(s) 20, 138, 158, 161, 296, 336
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 206, 267
Mva1269I GAATGC 2 cut(s) 22, 94
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 14
NciI CCSGG 1 cut(s) 206
NlaIII CATG 1 cut(s) 292
NruI TCGCGA 1 cut(s) 14
PctI GAATGC 2 cut(s) 22, 94
PkrI GCNGC 3 cut(s) 94, 182, 221
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 2 cut(s) 207, 269
PstI CTGCAG 1 cut(s) 185
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 93, 181, 220
Sau96I GGNCC 2 cut(s) 207, 269
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 206, 267
SetI ASST 6 cut(s) 31, 203, 268, 366, 374, 437
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 181
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 2 cut(s) 158, 280
SsiI CCGC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 204, 265
TaiI ACGT 1 cut(s) 437
TasI AATT 2 cut(s) 158, 280
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 406
TseI GCWGC 2 cut(s) 92, 180
TspDTI ATGAA 2 cut(s) 142, 182
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.