Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 81 - 128 | 5.2e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 309 |
| AccII | CGCG | 1 cut(s) | 607 |
| AciI | CCGC | 3 cut(s) | 177, 372, 605 |
| AfaI | GTAC | 1 cut(s) | 483 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 625 |
| AflIII | ACRYGT | 1 cut(s) | 474 |
| AgsI | TTSAA | 2 cut(s) | 434, 594 |
| AjnI | CCWGG | 2 cut(s) | 303, 624 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 410, 442 |
| AleI | CACNNNNGTG | 1 cut(s) | 257 |
| AluBI | AGCT | 2 cut(s) | 202, 588 |
| AluI | AGCT | 2 cut(s) | 202, 588 |
| AoxI | GGCC | 1 cut(s) | 267 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AsuHPI | GGTGA | 4 cut(s) | 244, 271, 293, 328 |
| AsuNHI | GCTAGC | 1 cut(s) | 584 |
| BbsI | GAAGAC | 2 cut(s) | 36, 241 |
| BccI | CCATC | 2 cut(s) | 635, 663 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 629, 663 |
| BciT130I | CCWGG | 2 cut(s) | 305, 626 |
| BfaI | CTAG | 2 cut(s) | 21, 585 |
| BfmI | CTRYAG | 1 cut(s) | 530 |
| BisI | GCNGC | 1 cut(s) | 178 |
| BlsI | GCNGC | 1 cut(s) | 179 |
| Bme1390I | CCNGG | 2 cut(s) | 305, 626 |
| BmrFI | CCNGG | 2 cut(s) | 305, 626 |
| BmsI | GCATC | 3 cut(s) | 286, 482, 637 |
| BmtI | GCTAGC | 1 cut(s) | 588 |
| BpiI | GAAGAC | 2 cut(s) | 36, 241 |
| BpuEI | CTTGAG | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 3 cut(s) | 255, 291, 624 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 625 |
| Bse118I | RCCGGY | 1 cut(s) | 275 |
| Bse1I | ACTGG | 1 cut(s) | 513 |
| Bse3DI | GCAATG | 2 cut(s) | 286, 496 |
| BseBI | CCWGG | 2 cut(s) | 305, 626 |
| BseDI | CCNNGG | 3 cut(s) | 255, 291, 624 |
| BseGI | GGATG | 5 cut(s) | 70, 301, 456, 497, 674 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 625 |
| BseMI | GCAATG | 2 cut(s) | 286, 496 |
| BseNI | ACTGG | 1 cut(s) | 513 |
| BseRI | GAGGAG | 1 cut(s) | 534 |
| Bsh1236I | CGCG | 1 cut(s) | 607 |
| Bsh1285I | CGRYCG | 1 cut(s) | 639 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BsiEI | CGRYCG | 1 cut(s) | 639 |
| BsiSI | CCGG | 2 cut(s) | 236, 276 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 625 |
| BsnI | GGCC | 1 cut(s) | 269 |
| Bsp143I | GATC | 1 cut(s) | 553 |
| Bsp19I | CCATGG | 1 cut(s) | 255 |
| BspACI | CCGC | 3 cut(s) | 177, 372, 605 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspFNI | CGCG | 1 cut(s) | 607 |
| BspMAI | CTGCAG | 1 cut(s) | 534 |
| BspOI | GCTAGC | 1 cut(s) | 588 |
| BsrDI | GCAATG | 2 cut(s) | 286, 496 |
| BsrFI | RCCGGY | 1 cut(s) | 275 |
| BsrI | ACTGG | 1 cut(s) | 513 |
| BssAI | RCCGGY | 1 cut(s) | 275 |
| BssECI | CCNNGG | 3 cut(s) | 255, 291, 624 |
| BssMI | GATC | 1 cut(s) | 553 |
| BssT1I | CCWWGG | 2 cut(s) | 255, 291 |
| Bst2UI | CCWGG | 2 cut(s) | 305, 626 |
| Bst4CI | ACNGT | 1 cut(s) | 637 |
| BstC8I | GCNNGC | 3 cut(s) | 277, 586, 609 |
| BstDEI | CTNAG | 1 cut(s) | 219 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 5 cut(s) | 70, 301, 456, 497, 674 |
| BstFNI | CGCG | 1 cut(s) | 607 |
| BstKTI | GATC | 1 cut(s) | 556 |
| BstMBI | GATC | 1 cut(s) | 553 |
| BstMCI | CGRYCG | 1 cut(s) | 639 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 613 |
| BstNI | CCWGG | 2 cut(s) | 305, 626 |
| BstNSI | RCATGY | 2 cut(s) | 146, 478 |
| BstSCI | CCNGG | 2 cut(s) | 303, 624 |
| BstSFI | CTRYAG | 1 cut(s) | 530 |
| BstUI | CGCG | 1 cut(s) | 607 |
| BstV2I | GAAGAC | 2 cut(s) | 36, 241 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 5 cut(s) | 70, 301, 456, 497, 674 |
| BtsI | GCAGTG | 2 cut(s) | 230, 527 |
| BtsIMutI | CAGTG | 4 cut(s) | 230, 520, 527, 573 |
| Cac8I | GCNNGC | 3 cut(s) | 277, 586, 609 |
| Cfr10I | RCCGGY | 1 cut(s) | 275 |
| CsiI | ACCWGGT | 1 cut(s) | 303 |
| Csp6I | GTAC | 1 cut(s) | 482 |
| CviAII | CATG | 5 cut(s) | 143, 185, 256, 475, 681 |
| CviQI | GTAC | 1 cut(s) | 482 |
| DdeI | CTNAG | 1 cut(s) | 219 |
| DpnI | GATC | 1 cut(s) | 555 |
| DpnII | GATC | 1 cut(s) | 553 |
| Eco130I | CCWWGG | 2 cut(s) | 255, 291 |
| EcoRII | CCWGG | 2 cut(s) | 303, 624 |
| EcoT14I | CCWWGG | 2 cut(s) | 255, 291 |
| ErhI | CCWWGG | 2 cut(s) | 255, 291 |
| FaeI | CATG | 5 cut(s) | 146, 188, 259, 478, 684 |
| FatI | CATG | 5 cut(s) | 142, 184, 255, 474, 680 |
| FauNDI | CATATG | 1 cut(s) | 153 |
| FblI | GTMKAC | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 1 cut(s) | 178 |
| FokI | GGATG | 4 cut(s) | 77, 308, 463, 504 |
| Fsp4HI | GCNGC | 1 cut(s) | 178 |
| FspBI | CTAG | 2 cut(s) | 21, 585 |
| GluI | GCNGC | 1 cut(s) | 178 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| HapII | CCGG | 2 cut(s) | 236, 276 |
| Hin1II | CATG | 5 cut(s) | 146, 188, 259, 478, 684 |
| HinfI | GANTC | 2 cut(s) | 148, 395 |
| HpaII | CCGG | 2 cut(s) | 236, 276 |
| HphI | GGTGA | 4 cut(s) | 244, 271, 293, 328 |
| Hpy166II | GTNNAC | 3 cut(s) | 121, 310, 562 |
| Hpy188I | TCNGA | 1 cut(s) | 394 |
| Hpy188III | TCNNGA | 1 cut(s) | 37 |
| Hpy8I | GTNNAC | 3 cut(s) | 121, 310, 562 |
| HpyCH4III | ACNGT | 1 cut(s) | 637 |
| HpyCH4IV | ACGT | 2 cut(s) | 484, 545 |
| HpyCH4V | TGCA | 2 cut(s) | 532, 650 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 613 |
| HpyF3I | CTNAG | 1 cut(s) | 219 |
| HpySE526I | ACGT | 2 cut(s) | 484, 545 |
| Hsp92II | CATG | 5 cut(s) | 146, 188, 259, 478, 684 |
| KroI | GCCGGC | 1 cut(s) | 275 |
| KroNI | GCCGGC | 1 cut(s) | 277 |
| Kzo9I | GATC | 1 cut(s) | 553 |
| LweI | GCATC | 3 cut(s) | 286, 482, 637 |
| MabI | ACCWGGT | 1 cut(s) | 303 |
| MaeI | CTAG | 2 cut(s) | 21, 585 |
| MaeII | ACGT | 2 cut(s) | 484, 545 |
| MaeIII | GTNAC | 3 cut(s) | 23, 67, 334 |
| MalI | GATC | 1 cut(s) | 555 |
| MboI | GATC | 1 cut(s) | 553 |
| MboII | GAAGA | 2 cut(s) | 41, 241 |
| MluCI | AATT | 4 cut(s) | 16, 92, 400, 597 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| MnlI | CCTC | 8 cut(s) | 44, 46, 55, 76, 222, 337, 512, 659 |
| MroNI | GCCGGC | 1 cut(s) | 275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MseI | TTAA | 4 cut(s) | 108, 135, 207, 362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 257 |
| MspI | CCGG | 2 cut(s) | 236, 276 |
| MspR9I | CCNGG | 2 cut(s) | 305, 626 |
| MvaI | CCWGG | 2 cut(s) | 305, 626 |
| MvnI | CGCG | 1 cut(s) | 607 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 613 |
| NaeI | GCCGGC | 1 cut(s) | 277 |
| NcoI | CCATGG | 1 cut(s) | 255 |
| NdeI | CATATG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 553 |
| NgoMIV | GCCGGC | 1 cut(s) | 275 |
| NheI | GCTAGC | 1 cut(s) | 584 |
| NlaIII | CATG | 5 cut(s) | 146, 188, 259, 478, 684 |
| NmuCI | GTSAC | 2 cut(s) | 23, 334 |
| NspI | RCATGY | 2 cut(s) | 146, 478 |
| OliI | CACNNNNGTG | 1 cut(s) | 257 |
| PciI | ACATGT | 1 cut(s) | 474 |
| PdiI | GCCGGC | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 148, 395 |
| PkrI | GCNGC | 1 cut(s) | 179 |
| PscI | ACATGT | 1 cut(s) | 474 |
| Psp6I | CCWGG | 2 cut(s) | 303, 624 |
| PspGI | CCWGG | 2 cut(s) | 303, 624 |
| PstI | CTGCAG | 1 cut(s) | 534 |
| RsaI | GTAC | 1 cut(s) | 483 |
| RsaNI | GTAC | 1 cut(s) | 482 |
| RseI | CAYNNNNRTG | 1 cut(s) | 257 |
| SaqAI | TTAA | 4 cut(s) | 108, 135, 207, 362 |
| SatI | GCNGC | 1 cut(s) | 178 |
| Sau3AI | GATC | 1 cut(s) | 553 |
| ScrFI | CCNGG | 2 cut(s) | 305, 626 |
| SexAI | ACCWGGT | 1 cut(s) | 303 |
| SfaNI | GCATC | 3 cut(s) | 286, 482, 637 |
| SfcI | CTRYAG | 1 cut(s) | 530 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 257 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 4 cut(s) | 16, 92, 400, 597 |
| SsiI | CCGC | 3 cut(s) | 177, 372, 605 |
| SspMI | CTAG | 2 cut(s) | 21, 585 |
| StyD4I | CCNGG | 2 cut(s) | 303, 624 |
| StyI | CCWWGG | 2 cut(s) | 255, 291 |
| TaaI | ACNGT | 1 cut(s) | 637 |
| TaiI | ACGT | 2 cut(s) | 487, 548 |
| TaqI | TCGA | 1 cut(s) | 639 |
| TasI | AATT | 4 cut(s) | 16, 92, 400, 597 |
| TauI | GCSGC | 1 cut(s) | 180 |
| TfiI | GAWTC | 2 cut(s) | 148, 395 |
| Tru1I | TTAA | 4 cut(s) | 108, 135, 207, 362 |
| Tru9I | TTAA | 4 cut(s) | 108, 135, 207, 362 |
| TscAI | CASTG | 4 cut(s) | 237, 520, 534, 580 |
| TseFI | GTSAC | 2 cut(s) | 23, 334 |
| Tsp45I | GTSAC | 2 cut(s) | 23, 334 |
| TspDTI | ATGAA | 4 cut(s) | 140, 204, 467, 554 |
| TspRI | CASTG | 4 cut(s) | 237, 520, 534, 580 |
| XceI | RCATGY | 2 cut(s) | 146, 478 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 262 |
| XmiI | GTMKAC | 1 cut(s) | 309 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 2 cut(s) | 21, 585 |