FvH4_7g08991

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000101
Physical Location & Seq
Forward (+)
8790352 .. 8791131
780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08991.t1

Sequence Viewer

Length: 780 bp
ATGTTGGACAAAGGTATGAAGCCCTGTTTGAATACCAGCTTGGCTTTGTTCAATGGCATTGCTTGCTTCGAGTCATTGGAGAATAGCAAAGAGTTTTATGAGCAGGTAAAGCCTAAAGGGGTCTTGCCTGATGCTGGTGAAGGGACTGAAGGCCGTTTCACTGAGCTAATGAAGTCATTTCAGTCGTATGCCGATCTCGAGAAGAGAACCATCGACAAAGATATTCAAGAAGTTATCAGTGAGTTCTCAGAAGAAGGTTTCGGGAAACATGCAGCGAAAATCTTCTGTGCTATGGTAGAAGATGGCAATGTCAGCGAGGCAATGGATCTCTTTCAATCGACACCTGAGACTCGCATCAATCCCATGGTCATAGTCTACACTACTGTTATTGAAGCATACATCAAACGTAACAAGAACAAGGATGCTCTCCAGACCTACCTGAACATGTTAGCTGCTGGACTTGCTCCTAATTTGTACATTTACAGTGTTTTGATCAAGGGACTCGCTGTTGATGCCGACTTCTTTGGAGATGCCAAGAAGTATTTGATTGAGATGCTGGACAAGGGCATGCATCCAAATGCTGGTACCTACACTGCAGTGTTAGAGGGTTTTGGAAGGCAGGAGAACAAGAAAGCAGAGGAAGAGGGAAAAGAGTTTCTGGAGGTCATGATGGCTAAGGGGTTCGTCCCTGACACCGAGGCTGTGAGGGAGGTGTTAAAGGGCAGACCAACACCTGTAATTAGCAGGGTCATGAGTATTATCCTTTCTAAGTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

5.07

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 118 - 166 8.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 121 - 169 1.6e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 375
AclWI GGATC 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 476, 586
AfiI CCNNNNNNNGG 2 cut(s) 134, 581
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 5 cut(s) 31, 52, 227, 335, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 3 cut(s) 39, 166, 452
AluI AGCT 3 cut(s) 39, 166, 452
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 272, 452
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 197
BanI GGYRCC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 284, 439
BccI CCATC 3 cut(s) 218, 296, 664
BceAI ACGGC 1 cut(s) 138
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 273, 453
BlsI GCNGC 2 cut(s) 274, 454
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 586
BmsI GCATC 7 cut(s) 121, 363, 412, 502, 520, 543, 580
BpmI CTGGAG 2 cut(s) 413, 680
Bpu10I CCTNAGC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 363, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 581
Bse3DI GCAATG 3 cut(s) 57, 313, 327
BseDI CCNNGG 2 cut(s) 363, 696
BseGI GGATG 2 cut(s) 427, 571
BseLI CCNNNNNNNGG 2 cut(s) 134, 581
BseMI GCAATG 3 cut(s) 57, 313, 327
BseMII CTCAG 3 cut(s) 153, 261, 336
BseXI GCAGC 2 cut(s) 284, 439
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 197
BslFI GGGAC 3 cut(s) 157, 513, 671
BslI CCNNNNNNNGG 2 cut(s) 134, 581
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 3 cut(s) 157, 513, 671
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 3 cut(s) 193, 325, 492
Bsp19I CCATGG 1 cut(s) 363
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 3 cut(s) 154, 260, 337
BspHI TCATGA 2 cut(s) 666, 750
BspLI GGNNCC 1 cut(s) 586
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 584
BsrDI GCAATG 3 cut(s) 57, 313, 327
BsrGI TGTACA 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 363, 696
BssMI GATC 3 cut(s) 193, 325, 492
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 385, 485
Bst6I CTCTTC 2 cut(s) 197, 636
BstAPI GCANNNNNTGC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 64, 569
BstDEI CTNAG 5 cut(s) 162, 247, 345, 675, 768
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 427, 571
BstKTI GATC 3 cut(s) 196, 328, 495
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 193, 325, 492
BstMWI GCNNNNNNNGC 5 cut(s) 63, 109, 312, 461, 512
BstNSI RCATGY 3 cut(s) 272, 448, 571
BstSFI CTRYAG 1 cut(s) 594
BstV1I GCAGC 2 cut(s) 284, 439
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 427, 571
BtsI GCAGTG 2 cut(s) 591, 603
BtsIMutI CAGTG 5 cut(s) 159, 244, 490, 591, 603
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 64, 569
CciI TCATGA 2 cut(s) 666, 750
Csp6I GTAC 2 cut(s) 475, 585
CviAII CATG 6 cut(s) 269, 364, 445, 568, 667, 751
CviJI RGCY 9 cut(s) 22, 39, 44, 112, 153, 166, 452, 674, 701
CviKI_1 RGCY 9 cut(s) 22, 39, 44, 112, 153, 166, 452, 674, 701
CviQI GTAC 2 cut(s) 475, 585
DdeI CTNAG 5 cut(s) 162, 247, 345, 675, 768
DpnI GATC 3 cut(s) 195, 327, 494
DpnII GATC 3 cut(s) 193, 325, 492
Eam1104I CTCTTC 2 cut(s) 197, 636
EarI CTCTTC 2 cut(s) 197, 636
Eco130I CCWWGG 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 6 cut(s) 272, 367, 448, 571, 670, 754
FaqI GGGAC 3 cut(s) 157, 513, 671
FatI CATG 6 cut(s) 268, 363, 444, 567, 666, 750
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 273, 453
FokI GGATG 2 cut(s) 434, 558
Fsp4HI GCNGC 2 cut(s) 273, 453
GluI GCNGC 2 cut(s) 273, 453
GsuI CTGGAG 2 cut(s) 413, 680
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 6 cut(s) 272, 367, 448, 571, 670, 754
HinfI GANTC 3 cut(s) 71, 349, 501
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 8 cut(s) 197, 199, 227, 262, 430, 659, 667, 751
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 134, 143, 248, 609
HpyCH4III ACNGT 2 cut(s) 385, 485
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 272, 571, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 109, 312, 461, 512
HpyF3I CTNAG 5 cut(s) 162, 247, 345, 675, 768
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 6 cut(s) 272, 367, 448, 571, 670, 754
KpnI GGTACC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 3 cut(s) 193, 325, 492
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 2 cut(s) 284, 439
LweI GCATC 7 cut(s) 121, 363, 412, 502, 520, 543, 580
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 195, 327, 494
MboI GATC 3 cut(s) 193, 325, 492
MboII GAAGA 5 cut(s) 214, 263, 274, 311, 653
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 469, 738
MlyI GAGTC 3 cut(s) 80, 343, 495
MnlI CCTC 8 cut(s) 310, 598, 631, 637, 655, 691, 699, 703
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 716
MslI CAYNNNNRTG 2 cut(s) 576, 596
MwoI GCNNNNNNNGC 5 cut(s) 63, 109, 312, 461, 512
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 193, 325, 492
NlaIII CATG 6 cut(s) 272, 367, 448, 571, 670, 754
NlaIV GGNNCC 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 3 cut(s) 272, 448, 571
OliI CACNNNNGTG 1 cut(s) 596
PaeI GCATGC 1 cut(s) 571
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 2 cut(s) 666, 750
PciI ACATGT 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 2 cut(s) 274, 454
PleI GAGTC 3 cut(s) 79, 343, 495
PpsI GAGTC 3 cut(s) 79, 343, 495
PscI ACATGT 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 586
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 476, 586
RsaNI GTAC 2 cut(s) 475, 585
RseI CAYNNNNRTG 2 cut(s) 576, 596
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 2 cut(s) 273, 453
Sau3AI GATC 3 cut(s) 193, 325, 492
SchI GAGTC 3 cut(s) 80, 343, 495
SfaNI GCATC 7 cut(s) 121, 363, 412, 502, 520, 543, 580
SfcI CTRYAG 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 576, 596
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 571
Sse9I AATT 2 cut(s) 469, 738
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 385, 485
TaiI ACGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 69, 198, 213, 338
TasI AATT 2 cut(s) 469, 738
TatI WGTACW 1 cut(s) 474
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 5 cut(s) 166, 244, 490, 598, 603
TseI GCWGC 2 cut(s) 272, 452
TspDTI ATGAA 2 cut(s) 32, 185
TspRI CASTG 5 cut(s) 166, 244, 490, 598, 603
Van91I CCANNNNNTGG 1 cut(s) 581
XceI RCATGY 3 cut(s) 272, 448, 571
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.