Rorug07G0293200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28660721 .. 28661753
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0293200.1

Sequence Viewer

Length: 363 bp
ATGACTGTCAAGAAATGGGAATTCCCACCCCGTGGAAGACTGAAACTAAACGTTAATGGGGCATTCAGAAGTGAAACTAGAAATGGTGGAGTCGGAGTTGTTGCTAGAGATGATTTGGGAAATTTCAAAGCAGCTTGGTCCCGTTTTATTCCCCATATGTCCTCGGCATTGCATGTTGAGGTTGAGGCATGTAGAGCGGGGCTTCTATTGGCCATCCACCAAGGTTGGAAGGAGATTGAAATTGAGAGTGATTCTTCAATTTTGGTGGCTGCTTTGAATCAAAAAGGTGAAAATCACTCAGAGGTCAAAGAACCTCATATTTTGGTTGGTGGTGGATGGTTTTGTGAGGACAGAAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

7.87

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 17 - 103 4.4e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 197
AciI CCGC 1 cut(s) 197
AclI AACGTT 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 20, 121
AdeI CACNNNGTG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 4 cut(s) 127, 239, 258, 277
AhdI GACNNNNNGTC 1 cut(s) 355
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 131, 269
ApoI RAATTY 2 cut(s) 20, 121
AspS9I GGNCC 2 cut(s) 138, 357
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 138, 357
BalI TGGCCA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 143, 256
BccI CCATC 2 cut(s) 221, 330
BfaI CTAG 3 cut(s) 78, 105, 361
BisI GCNGC 2 cut(s) 132, 270
BlsI GCNGC 2 cut(s) 133, 271
Bme18I GGWCC 2 cut(s) 138, 357
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 138, 357
BmiI GGNNCC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 31, 162, 220
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 31, 162, 220
BseGI GGATG 2 cut(s) 213, 341
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 143, 256
BshFI GGCC 1 cut(s) 212
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 212
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 31, 162, 220
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 213, 341
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 176, 192
BstV1I GCAGC 2 cut(s) 143, 256
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 2 cut(s) 213, 341
Cfr13I GGNCC 2 cut(s) 138, 357
CspCI CAANNNNNGTGG 4 cut(s) 206, 241, 246, 281
CviAII CATG 2 cut(s) 173, 189
CviJI RGCY 4 cut(s) 134, 202, 212, 269
CviKI_1 RGCY 4 cut(s) 134, 202, 212, 269
DdeI CTNAG 1 cut(s) 298
DraIII CACNNNGTG 1 cut(s) 32
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 138, 357
EcoO109I RGGNCCY 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 176, 192
FaiI YATR 5 cut(s) 156, 158, 174, 190, 318
FaqI GGGAC 1 cut(s) 124
FatI CATG 2 cut(s) 172, 188
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 132, 270
FokI GGATG 2 cut(s) 200, 348
Fsp4HI GCNGC 2 cut(s) 132, 270
FspBI CTAG 3 cut(s) 78, 105, 361
GluI GCNGC 2 cut(s) 132, 270
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 2 cut(s) 176, 192
HinfI GANTC 3 cut(s) 90, 251, 277
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 3 cut(s) 68, 95, 301
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 223, 348
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 176, 192
Lsp1109I GCAGC 2 cut(s) 143, 256
MaeI CTAG 3 cut(s) 78, 105, 361
MaeII ACGT 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 197
MboII GAAGA 2 cut(s) 48, 246
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 20, 121, 240, 258
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 73, 206
MnlI CCTC 6 cut(s) 172, 172, 178, 295, 324, 340
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeI CATATG 1 cut(s) 156
NlaIII CATG 2 cut(s) 176, 192
NlaIV GGNNCC 1 cut(s) 140
NmeAIII GCCGAG 1 cut(s) 143
NspI RCATGY 2 cut(s) 176, 192
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 251, 277
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 133, 271
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 138, 357
PspPPI RGGWCCY 1 cut(s) 357
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 132, 270
Sau96I GGNCC 2 cut(s) 138, 357
SchI GAGTC 1 cut(s) 99
SetI ASST 8 cut(s) 54, 136, 183, 226, 289, 306, 316, 359
SinI GGWCC 2 cut(s) 138, 357
Sse9I AATT 4 cut(s) 20, 121, 240, 258
SsiI CCGC 1 cut(s) 197
SspMI CTAG 3 cut(s) 78, 105, 361
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 54
TasI AATT 4 cut(s) 20, 121, 240, 258
TfiI GAWTC 2 cut(s) 251, 277
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 2 cut(s) 131, 269
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 138, 357
XapI RAATTY 2 cut(s) 20, 121
XceI RCATGY 2 cut(s) 176, 192
XspI CTAG 3 cut(s) 78, 105, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.