Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 76 - 123 | 3.3e-11 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 236 |
| AclI | AACGTT | 1 cut(s) | 297 |
| AcoI | YGGCCR | 3 cut(s) | 171, 228, 274 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfaI | GTAC | 3 cut(s) | 78, 308, 347 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 18, 226 |
| AflIII | ACRYGT | 2 cut(s) | 309, 342 |
| AgsI | TTSAA | 6 cut(s) | 17, 92, 112, 140, 196, 482 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 176, 208 |
| AluBI | AGCT | 2 cut(s) | 339, 380 |
| AluI | AGCT | 2 cut(s) | 339, 380 |
| Alw26I | GTCTC | 1 cut(s) | 30 |
| AoxI | GGCC | 3 cut(s) | 171, 228, 274 |
| ApeKI | GCWGC | 3 cut(s) | 54, 336, 377 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 1 cut(s) | 5 |
| AvaII | GGWCC | 1 cut(s) | 5 |
| BbvI | GCAGC | 3 cut(s) | 66, 348, 389 |
| BccI | CCATC | 1 cut(s) | 251 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 366, 400 |
| BcoDI | GTCTC | 1 cut(s) | 30 |
| BfmI | CTRYAG | 1 cut(s) | 469 |
| BisI | GCNGC | 3 cut(s) | 55, 337, 378 |
| BlsI | GCNGC | 3 cut(s) | 56, 338, 379 |
| Bme18I | GGWCC | 1 cut(s) | 5 |
| BmgT120I | GGNCC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 3 cut(s) | 6, 7, 513 |
| BpmI | CTGGAG | 1 cut(s) | 342 |
| BsaAI | YACGTR | 1 cut(s) | 345 |
| BsaI | GGTCTC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 27, 57 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 18, 226 |
| Bse118I | RCCGGY | 2 cut(s) | 226, 272 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse3DI | GCAATG | 1 cut(s) | 486 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 18, 226 |
| BseMI | GCAATG | 1 cut(s) | 486 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseX3I | CGGCCG | 1 cut(s) | 228 |
| BseXI | GCAGC | 3 cut(s) | 66, 348, 389 |
| BseYI | CCCAGC | 1 cut(s) | 332 |
| Bsh1285I | CGRYCG | 1 cut(s) | 231 |
| BshFI | GGCC | 3 cut(s) | 173, 230, 276 |
| BsiEI | CGRYCG | 1 cut(s) | 231 |
| BsiSI | CCGG | 2 cut(s) | 227, 273 |
| BslFI | GGGAC | 1 cut(s) | 378 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 18, 226 |
| BsmAI | GTCTC | 1 cut(s) | 30 |
| BsmFI | GGGAC | 1 cut(s) | 378 |
| BsnI | GGCC | 3 cut(s) | 173, 230, 276 |
| Bso31I | GGTCTC | 1 cut(s) | 30 |
| Bsp1407I | TGTACA | 1 cut(s) | 76 |
| BspACI | CCGC | 1 cut(s) | 236 |
| BspANI | GGCC | 3 cut(s) | 173, 230, 276 |
| BspLI | GGNNCC | 3 cut(s) | 6, 7, 513 |
| BspTNI | GGTCTC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 1 cut(s) | 486 |
| BsrFI | RCCGGY | 2 cut(s) | 226, 272 |
| BsrGI | TGTACA | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssAI | RCCGGY | 2 cut(s) | 226, 272 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 3 cut(s) | 119, 373, 503 |
| BstAUI | TGTACA | 1 cut(s) | 76 |
| BstBAI | YACGTR | 1 cut(s) | 345 |
| BstC8I | GCNNGC | 3 cut(s) | 171, 228, 263 |
| BstDSI | CCRYGG | 1 cut(s) | 231 |
| BstMAI | GTCTC | 1 cut(s) | 30 |
| BstMCI | CGRYCG | 1 cut(s) | 231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 179 |
| BstNSI | RCATGY | 1 cut(s) | 313 |
| BstSFI | CTRYAG | 1 cut(s) | 469 |
| BstV1I | GCAGC | 3 cut(s) | 66, 348, 389 |
| BstZI | CGGCCG | 1 cut(s) | 228 |
| BsuRI | GGCC | 3 cut(s) | 173, 230, 276 |
| BtgI | CCRYGG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| Cac8I | GCNNGC | 3 cut(s) | 171, 228, 263 |
| Cfr10I | RCCGGY | 2 cut(s) | 226, 272 |
| Cfr13I | GGNCC | 1 cut(s) | 5 |
| Csp6I | GTAC | 3 cut(s) | 77, 307, 346 |
| CviAII | CATG | 4 cut(s) | 41, 250, 286, 310 |
| CviQI | GTAC | 3 cut(s) | 77, 307, 346 |
| EaeI | YGGCCR | 3 cut(s) | 171, 228, 274 |
| EagI | CGGCCG | 1 cut(s) | 228 |
| EclXI | CGGCCG | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 30 |
| Eco47I | GGWCC | 1 cut(s) | 5 |
| Eco52I | CGGCCG | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| EcoT22I | ATGCAT | 1 cut(s) | 136 |
| FaeI | CATG | 4 cut(s) | 44, 253, 289, 313 |
| FaqI | GGGAC | 1 cut(s) | 378 |
| FatI | CATG | 4 cut(s) | 40, 249, 285, 309 |
| Fnu4HI | GCNGC | 3 cut(s) | 55, 337, 378 |
| Fsp4HI | GCNGC | 3 cut(s) | 55, 337, 378 |
| GluI | GCNGC | 3 cut(s) | 55, 337, 378 |
| GsaI | CCCAGC | 1 cut(s) | 336 |
| GsuI | CTGGAG | 1 cut(s) | 342 |
| HaeIII | GGCC | 3 cut(s) | 173, 230, 276 |
| HapII | CCGG | 2 cut(s) | 227, 273 |
| Hin1II | CATG | 4 cut(s) | 44, 253, 289, 313 |
| HinfI | GANTC | 3 cut(s) | 97, 149, 324 |
| HpaII | CCGG | 2 cut(s) | 227, 273 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 499 |
| Hpy188I | TCNGA | 2 cut(s) | 210, 388 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 499 |
| Hpy99I | CGWCG | 1 cut(s) | 179 |
| HpyAV | CCTTC | 2 cut(s) | 215, 476 |
| HpyCH4III | ACNGT | 3 cut(s) | 119, 373, 503 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 297, 344 |
| HpyCH4V | TGCA | 3 cut(s) | 54, 134, 377 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 179 |
| HpySE526I | ACGT | 3 cut(s) | 69, 297, 344 |
| Hsp92II | CATG | 4 cut(s) | 44, 253, 289, 313 |
| KflI | GGGWCCC | 1 cut(s) | 5 |
| KroI | GCCGGC | 1 cut(s) | 226 |
| KroNI | GCCGGC | 1 cut(s) | 228 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 348, 389 |
| MaeII | ACGT | 3 cut(s) | 69, 297, 344 |
| MaeIII | GTNAC | 1 cut(s) | 325 |
| MluCI | AATT | 2 cut(s) | 349, 454 |
| MlyI | GAGTC | 1 cut(s) | 333 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 1 cut(s) | 157 |
| Mph1103I | ATGCAT | 1 cut(s) | 136 |
| MroNI | GCCGGC | 1 cut(s) | 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 96 |
| MslI | CAYNNNNRTG | 2 cut(s) | 248, 395 |
| MspI | CCGG | 2 cut(s) | 227, 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 179 |
| NaeI | GCCGGC | 1 cut(s) | 228 |
| NgoMIV | GCCGGC | 1 cut(s) | 226 |
| NlaIII | CATG | 4 cut(s) | 44, 253, 289, 313 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 7, 513 |
| NmeAIII | GCCGAG | 1 cut(s) | 245 |
| NmuCI | GTSAC | 1 cut(s) | 325 |
| NsiI | ATGCAT | 1 cut(s) | 136 |
| NspI | RCATGY | 1 cut(s) | 313 |
| PciI | ACATGT | 1 cut(s) | 309 |
| PdiI | GCCGGC | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 1 cut(s) | 96 |
| PfeI | GAWTC | 2 cut(s) | 97, 149 |
| PkrI | GCNGC | 3 cut(s) | 56, 338, 379 |
| PleI | GAGTC | 1 cut(s) | 332 |
| PpsI | GAGTC | 1 cut(s) | 332 |
| Ppu21I | YACGTR | 1 cut(s) | 345 |
| PpuMI | RGGWCCY | 1 cut(s) | 5 |
| PscI | ACATGT | 1 cut(s) | 309 |
| Psp1406I | AACGTT | 1 cut(s) | 297 |
| Psp5II | RGGWCCY | 1 cut(s) | 5 |
| PspFI | CCCAGC | 1 cut(s) | 332 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 7, 513 |
| PspPI | GGNCC | 1 cut(s) | 5 |
| PspPPI | RGGWCCY | 1 cut(s) | 5 |
| RsaI | GTAC | 3 cut(s) | 78, 308, 347 |
| RsaNI | GTAC | 3 cut(s) | 77, 307, 346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 248, 395 |
| SatI | GCNGC | 3 cut(s) | 55, 337, 378 |
| Sau96I | GGNCC | 1 cut(s) | 5 |
| SchI | GAGTC | 1 cut(s) | 333 |
| SetI | ASST | 7 cut(s) | 72, 105, 300, 308, 341, 347, 382 |
| SfcI | CTRYAG | 1 cut(s) | 469 |
| SinI | GGWCC | 1 cut(s) | 5 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 248, 395 |
| Sse9I | AATT | 2 cut(s) | 349, 454 |
| SsiI | CCGC | 1 cut(s) | 236 |
| TaaI | ACNGT | 3 cut(s) | 119, 373, 503 |
| TaiI | ACGT | 3 cut(s) | 72, 300, 347 |
| TasI | AATT | 2 cut(s) | 349, 454 |
| TatI | WGTACW | 1 cut(s) | 76 |
| TfiI | GAWTC | 2 cut(s) | 97, 149 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseFI | GTSAC | 1 cut(s) | 325 |
| TseI | GCWGC | 3 cut(s) | 54, 336, 377 |
| Tsp45I | GTSAC | 1 cut(s) | 325 |
| TspDTI | ATGAA | 1 cut(s) | 170 |
| TspRI | CASTG | 1 cut(s) | 325 |
| VpaK11BI | GGWCC | 1 cut(s) | 5 |
| XceI | RCATGY | 1 cut(s) | 313 |
| XmnI | GAANNNNTTC | 1 cut(s) | 96 |
| Zsp2I | ATGCAT | 1 cut(s) | 136 |