Rmu_sc0025395.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025395.1
OG0000101
Physical Location & Seq
Reverse (-)
496 .. 1725
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025395.1_g000001.1.cds

Sequence Viewer

Length: 1230 bp
atggagggcactagtttccccaattcttccgccgatggcctcaagaaacatgtaatgaaggttttcggggaggccaccaaagactgtgaggacaaggtcttgaaagaaattcgggactacgactcccttaacaagtatgccattcaactcttcaatatattggcaaataacaccctcgctgaggaagccaaagagctctttaagccttgctctgactctgccgtgctgcctgatgttgccgtcttcactattgtcattcgggcctacgcctgtgccggcaagaccaaggctgccctcgaggtctaccagcagatgatagccaccggtgtcgcccccacttcctgcacttacactatactcatcacctcacttgcaacaaactcatcttctgatgttaattttgttgggtatgccaagaagtattttttagaaatgttagataaggggatgaagccacattctgcctcctacatgactgtgttcaacgccattgcctgtcgggagtcagtggagaaggccagggagttccttgagcagatacaagcaaaggggtttacccctgagtccaaagttcatcactttgaagaaggccacctcactgaagcaatgaatgcaatgaagttgtatgatgatcttgtcaacaagaccactgacaagaagatgcaaaaagtcttccgcaagtggcgtacagccggcggtggccttgccaagaaagagtcattggagatgtttggtgctttgatagatgatggctatgtagacgaggccaacgagctttttaagcgcatttgtgagacgggtgtatatcccatggtcacaaatcacaccagcgttattcaagcctacctcaagtttggcaagaccaagggtgctctggaggcataccggggcatgttagcttcaggggttgctccaaactcctacacttacactgttttaatcaagggactcactattgaccccaatttctgtggagatgccaagaagtgcattcttgatatgatggacagggggataaggcccaatcctgctacctacactgcagtgatagagggatttgcgaagcaggaggacgaggcagctgaggaggaggccaaagacttggtggacgtaatgatgagtaagggatttgtgccaaacgcaaaggctatgatggaggttctgaagggaaggccaactcctcttataagaagggtcataaacattgtcctttccaagttgaagagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

409

Amino Acids

45.29

Weight (kDa)

7.52

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1187
AbsI CCTCGAGG 1 cut(s) 296
AccI GTMKAC 2 cut(s) 303, 759
AciI CCGC 3 cut(s) 30, 676, 696
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 3 cut(s) 621, 885, 1184
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 7 cut(s) 103, 146, 154, 484, 584, 839, 1222
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 518
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AleI CACNNNNGTG 1 cut(s) 1043
AluBI AGCT 5 cut(s) 196, 775, 899, 1082, 1227
AluI AGCT 5 cut(s) 196, 775, 899, 1082, 1227
Alw21I GWGCWC 2 cut(s) 198, 874
Alw26I GTCTC 1 cut(s) 788
Ama87I CYCGRG 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 226, 290, 1079
ApoI RAATTY 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 261, 1020
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 235, 664
Bbv12I GWGCWC 2 cut(s) 198, 874
BbvCI CCTCAGC 2 cut(s) 180, 1083
BbvI GCAGC 3 cut(s) 213, 277, 1091
BccI CCATC 4 cut(s) 29, 743, 997, 1147
BceAI ACGGC 2 cut(s) 206, 224
BciT130I CCWGG 1 cut(s) 520
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 788
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 1041
BisI GCNGC 3 cut(s) 227, 291, 1080
BlsI GCNGC 3 cut(s) 228, 292, 1081
Bme1390I CCNGG 2 cut(s) 520, 887
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 261, 1020
BmrFI CCNGG 2 cut(s) 520, 887
BmsI GCATC 2 cut(s) 651, 967
BpiI GAAGAC 2 cut(s) 235, 664
BpmI CTGGAG 1 cut(s) 896
Bpu10I CCTNAGC 2 cut(s) 180, 1083
BpuEI CTTGAG 3 cut(s) 26, 551, 833
BpuMI CCSGG 1 cut(s) 887
BsaJI CCNNGG 5 cut(s) 285, 519, 810, 864, 886
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 3 cut(s) 275, 323, 692
Bse3DI GCAATG 3 cut(s) 489, 612, 621
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 5 cut(s) 285, 519, 810, 864, 886
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 3 cut(s) 489, 612, 621
BseMII CTCAG 3 cut(s) 171, 552, 1074
BseRI GAGGAG 3 cut(s) 1100, 1103, 1170
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 213, 277, 1091
BsgI GTGCAG 1 cut(s) 328
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 2 cut(s) 198, 874
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 276, 324, 693, 886
BslFI GGGAC 2 cut(s) 128, 960
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 788
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 2 cut(s) 128, 960
BsmI GAATGC 2 cut(s) 616, 990
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 11, 198, 874
Bsp143I GATC 1 cut(s) 631
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 3 cut(s) 30, 676, 696
BspCNI CTCAG 3 cut(s) 172, 553, 1075
BspMAI CTGCAG 1 cut(s) 1045
BspQI GCTCTTC 1 cut(s) 1217
BsrDI GCAATG 3 cut(s) 489, 612, 621
BsrFI RCCGGY 3 cut(s) 275, 323, 692
BssAI RCCGGY 3 cut(s) 275, 323, 692
BssECI CCNNGG 5 cut(s) 285, 519, 810, 864, 886
BssMI GATC 1 cut(s) 631
BssT1I CCWWGG 3 cut(s) 285, 810, 864
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 3 cut(s) 86, 478, 934
Bst6I CTCTTC 2 cut(s) 155, 1217
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 277, 694
BstDEI CTNAG 3 cut(s) 180, 561, 1083
BstDSI CCRYGG 1 cut(s) 810
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 5 cut(s) 185, 202, 611, 781, 878
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 2 cut(s) 53, 895
BstSCI CCNGG 2 cut(s) 518, 885
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 213, 277, 1091
BstV2I GAAGAC 2 cut(s) 235, 664
BstXI CCANNNNNNTGG 1 cut(s) 1102
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 1 cut(s) 453
BtsI GCAGTG 2 cut(s) 1038, 1050
BtsIMutI CAGTG 6 cut(s) 513, 597, 648, 930, 1038, 1050
Cac8I GCNNGC 2 cut(s) 277, 694
CfoI GCGC 1 cut(s) 786
Cfr10I RCCGGY 3 cut(s) 275, 323, 692
Cfr13I GGNCC 2 cut(s) 261, 1020
Csp6I GTAC 1 cut(s) 687
CspAI ACCGGT 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviAII CATG 4 cut(s) 50, 472, 811, 892
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 3 cut(s) 180, 561, 1083
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 155, 1217
EarI CTCTTC 2 cut(s) 155, 1217
EciI GGCGGA 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 285, 810, 864
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 621, 885, 1184
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 3 cut(s) 285, 810, 864
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 3 cut(s) 285, 810, 864
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 4 cut(s) 53, 475, 814, 895
FaqI GGGAC 2 cut(s) 128, 960
FatI CATG 4 cut(s) 49, 471, 810, 891
FblI GTMKAC 2 cut(s) 303, 759
Fnu4HI GCNGC 3 cut(s) 227, 291, 1080
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 227, 291, 1080
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 785
GluI GCNGC 3 cut(s) 227, 291, 1080
GsuI CTGGAG 1 cut(s) 896
HapII CCGG 4 cut(s) 276, 324, 693, 886
HhaI GCGC 1 cut(s) 786
Hin1II CATG 4 cut(s) 53, 475, 814, 895
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 6 cut(s) 122, 215, 503, 563, 716, 948
HpaII CCGG 4 cut(s) 276, 324, 693, 886
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 5 cut(s) 304, 555, 640, 760, 1108
Hpy188I TCNGA 3 cut(s) 214, 391, 1164
Hpy188III TCNNGA 6 cut(s) 43, 100, 113, 500, 875, 995
Hpy8I GTNNAC 5 cut(s) 304, 555, 640, 760, 1108
HpyAV CCTTC 6 cut(s) 52, 508, 581, 1159, 1164, 1185
HpyCH4III ACNGT 3 cut(s) 86, 478, 934
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 6 cut(s) 345, 374, 614, 664, 990, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 202, 611, 781, 878
HpyF3I CTNAG 3 cut(s) 180, 561, 1083
HpySE526I ACGT 1 cut(s) 1110
Hsp92II CATG 4 cut(s) 53, 475, 814, 895
HspAI GCGC 1 cut(s) 784
KroI GCCGGC 2 cut(s) 275, 692
KroNI GCCGGC 2 cut(s) 277, 694
Kzo9I GATC 1 cut(s) 631
LguI GCTCTTC 1 cut(s) 1217
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 3 cut(s) 213, 277, 1091
LweI GCATC 2 cut(s) 651, 967
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 1 cut(s) 814
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 7 cut(s) 18, 142, 235, 378, 596, 664, 670
MhlI GDGCHC 3 cut(s) 11, 198, 874
MluCI AATT 4 cut(s) 22, 108, 397, 964
MlyI GAGTC 6 cut(s) 116, 209, 512, 572, 725, 942
MroNI GCCGGC 2 cut(s) 275, 692
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 5 cut(s) 129, 201, 396, 780, 938
MslI CAYNNNNRTG 2 cut(s) 476, 1043
MspA1I CMGCKG 1 cut(s) 1082
MspI CCGG 4 cut(s) 276, 324, 693, 886
MspR9I CCNGG 2 cut(s) 520, 887
Mva1269I GAATGC 2 cut(s) 616, 990
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 5 cut(s) 185, 202, 611, 781, 878
NaeI GCCGGC 2 cut(s) 277, 694
NciI CCSGG 1 cut(s) 887
NcoI CCATGG 1 cut(s) 810
NdeII GATC 1 cut(s) 631
NgoMIV GCCGGC 2 cut(s) 275, 692
NlaIII CATG 4 cut(s) 53, 475, 814, 895
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 2 cut(s) 53, 895
OliI CACNNNNGTG 1 cut(s) 1043
PaeR7I CTCGAG 1 cut(s) 296
PciI ACATGT 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 1217
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 2 cut(s) 616, 990
PdiI GCCGGC 2 cut(s) 277, 694
PdmI GAANNNNTTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 3 cut(s) 228, 292, 1081
PleI GAGTC 6 cut(s) 116, 209, 511, 571, 724, 942
PpsI GAGTC 6 cut(s) 116, 209, 511, 571, 724, 942
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 1187
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspPI GGNCC 2 cut(s) 261, 1020
PspXI VCTCGAGB 1 cut(s) 296
PstI CTGCAG 1 cut(s) 1045
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 1082
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 2 cut(s) 476, 1043
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 1217
SaqAI TTAA 5 cut(s) 129, 201, 396, 780, 938
SatI GCNGC 3 cut(s) 227, 291, 1080
Sau3AI GATC 1 cut(s) 631
Sau96I GGNCC 2 cut(s) 261, 1020
SchI GAGTC 6 cut(s) 116, 209, 512, 572, 725, 942
ScrFI CCNGG 2 cut(s) 520, 887
SduI GDGCHC 3 cut(s) 11, 198, 874
SfaNI GCATC 2 cut(s) 651, 967
SfcI CTRYAG 1 cut(s) 1041
Sfr274I CTCGAG 1 cut(s) 296
SgrAI CRCCGGYG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 476, 1043
SmlI CTYRAG 4 cut(s) 41, 296, 530, 848
SmoI CTYRAG 4 cut(s) 41, 296, 530, 848
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 22, 108, 397, 964
SsiI CCGC 3 cut(s) 30, 676, 696
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 518, 885
StyI CCWWGG 3 cut(s) 285, 810, 864
TaaI ACNGT 3 cut(s) 86, 478, 934
TaiI ACGT 1 cut(s) 1113
TaqI TCGA 1 cut(s) 297
TasI AATT 4 cut(s) 22, 108, 397, 964
Tru1I TTAA 5 cut(s) 129, 201, 396, 780, 938
Tru9I TTAA 5 cut(s) 129, 201, 396, 780, 938
TscAI CASTG 6 cut(s) 513, 604, 655, 937, 1045, 1050
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 3 cut(s) 226, 290, 1079
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 5 cut(s) 71, 464, 563, 623, 632
TspRI CASTG 6 cut(s) 513, 604, 655, 937, 1045, 1050
Tth111I GACNNNGTC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 108
XceI RCATGY 2 cut(s) 53, 895
XcmI CCANNNNNNNNNTGG 2 cut(s) 871, 1102
XhoI CTCGAG 1 cut(s) 296
XmiI GTMKAC 2 cut(s) 303, 759
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.