Rmu_sc0002921.1_g000005

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002921.1
OG0000101
Physical Location & Seq
Reverse (-)
22968 .. 23873
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002921.1_g000005.1.cds

Sequence Viewer

Length: 906 bp
atgattatcttccccacctcctgcactcacactatactcatcacggcacttgcaacagactcgtcttctgatgtcaattttgttgggtatgccaagaagtactttttggaaatgttggatatggggatgaagccccattctgcctcctgcatgtctgtgttcgacgccattgcctgccgagagtcagtggagaagatcagggagttccttgagcagatacaagcaaaggggttcgtccctgagtccaaaatttttcagtttggagaaacccaccttgcagaagcaatggagggaatgaagatgtatgatgatctcatcaccaataccactgacaaggatgtgcaaaaagtattctgcacgtggaacaccaagccaggttgcctctacaaaaaggcgttgaagatgtacaaggctttgattgaggatggcaatgcagaacaggccatggagcttgataagcgcgttgctgagatgcgtatgcagcccatgattgtagtgcacacctccgttattgaagcctatctcaagtttggcaagaccaagggtgctctggaggcatactacggcatgttagctgctggggttgccccaaactcctacacttacactgttttaatcaagggactcactactgacctcaactactctggagatgccaagaagtgcttgcttgagatgatggacaaggggatgaggcctaatgctgccacctacactgttgtgatagagagctttgcaaagcaagaggatgaggcatctgagaaggagtgcaaagagttggtggaggtgatgatgggtaagggttttgtgccaaatgcaaaggctatgatggaggttctaaagggaagaccaaaagctgtgataagaggggtcatgaacattgtcatttccaagttgaagggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

301

Amino Acids

33.56

Weight (kDa)

6.9

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 462
AcsI RAATTY 1 cut(s) 249
AcvI CACGTG 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 101, 407
AgsI TTSAA 3 cut(s) 400, 515, 898
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AleI CACNNNNGTG 1 cut(s) 719
AluBI AGCT 4 cut(s) 451, 575, 732, 857
AluI AGCT 4 cut(s) 451, 575, 732, 857
Alw21I GWGCWC 2 cut(s) 501, 550
Alw44I GTGCAC 1 cut(s) 497
AoxI GGCC 2 cut(s) 441, 695
ApaLI GTGCAC 1 cut(s) 497
ApeKI GCWGC 3 cut(s) 481, 575, 704
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 310, 799
BaeGI GKGCMC 1 cut(s) 501
BbrPI CACGTG 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 57, 853
Bbv12I GWGCWC 2 cut(s) 501, 550
BbvI GCAGC 3 cut(s) 493, 562, 691
BccI CCATC 4 cut(s) 419, 673, 787, 823
BceAI ACGGC 2 cut(s) 60, 580
BcgI CGANNNNNNTGC 4 cut(s) 42, 76, 152, 186
BciT130I CCWGG 1 cut(s) 375
BisI GCNGC 3 cut(s) 482, 576, 705
BlsI GCNGC 3 cut(s) 483, 577, 706
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 462, 643, 764
BpiI GAAGAC 2 cut(s) 57, 853
BpmI CTGGAG 2 cut(s) 572, 669
BpuEI CTTGAG 3 cut(s) 230, 509, 692
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 444, 540
Bse3DI GCAATG 3 cut(s) 168, 291, 436
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 444, 540
BseGI GGATG 5 cut(s) 132, 343, 430, 696, 754
BseMI GCAATG 3 cut(s) 168, 291, 436
BseMII CTCAG 3 cut(s) 231, 459, 750
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 3 cut(s) 493, 562, 691
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 2 cut(s) 7, 340
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 443, 697
BsiHKAI GWGCWC 2 cut(s) 501, 550
BslFI GGGAC 2 cut(s) 221, 636
BsmFI GGGAC 2 cut(s) 221, 636
BsnI GGCC 2 cut(s) 443, 697
Bsp1286I GDGCHC 2 cut(s) 501, 550
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 2 cut(s) 195, 310
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 2 cut(s) 443, 697
BspCNI CTCAG 3 cut(s) 232, 460, 751
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 873
BsrDI GCAATG 3 cut(s) 168, 291, 436
BsrGI TGTACA 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 444, 540
BssMI GATC 2 cut(s) 195, 310
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 444, 540
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 610, 718
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 175, 668
BstDEI CTNAG 3 cut(s) 240, 468, 759
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 5 cut(s) 132, 343, 430, 696, 754
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 2 cut(s) 198, 313
BstMBI GATC 2 cut(s) 195, 310
BstMWI GCNNNNNNNGC 5 cut(s) 440, 457, 481, 554, 584
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 2 cut(s) 154, 571
BstSCI CCNGG 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 493, 562, 691
BstV2I GAAGAC 2 cut(s) 57, 853
BsuRI GGCC 2 cut(s) 443, 697
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 5 cut(s) 132, 343, 430, 696, 754
BtsIMutI CAGTG 4 cut(s) 192, 327, 606, 714
Cac8I GCNNGC 2 cut(s) 175, 668
CciI TCATGA 1 cut(s) 873
CfoI GCGC 1 cut(s) 462
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 100, 406
CviAII CATG 5 cut(s) 151, 445, 487, 568, 874
CviQI GTAC 2 cut(s) 100, 406
DdeI CTNAG 3 cut(s) 240, 468, 759
DpnI GATC 2 cut(s) 197, 312
DpnII GATC 2 cut(s) 195, 310
Eco130I CCWWGG 2 cut(s) 444, 540
Eco147I AGGCCT 1 cut(s) 697
Eco72I CACGTG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 444, 540
ErhI CCWWGG 2 cut(s) 444, 540
FaeI CATG 5 cut(s) 154, 448, 490, 571, 877
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 650, 682
FaqI GGGAC 2 cut(s) 221, 636
FatI CATG 5 cut(s) 150, 444, 486, 567, 873
Fnu4HI GCNGC 3 cut(s) 482, 576, 705
FokI GGATG 5 cut(s) 139, 350, 437, 703, 761
Fsp4HI GCNGC 3 cut(s) 482, 576, 705
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 482, 576, 705
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 2 cut(s) 572, 669
HaeIII GGCC 2 cut(s) 443, 697
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 154, 448, 490, 571, 877
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HinfI GANTC 4 cut(s) 59, 182, 242, 624
HphI GGTGA 2 cut(s) 310, 799
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 2 cut(s) 70, 760
Hpy188III TCNNGA 3 cut(s) 551, 648, 874
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 757, 892
HpyCH4III ACNGT 2 cut(s) 610, 718
HpyCH4IV ACGT 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 457, 481, 554, 584
HpyF3I CTNAG 3 cut(s) 240, 468, 759
HpySE526I ACGT 1 cut(s) 359
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 154, 448, 490, 571, 877
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 195, 310
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 3 cut(s) 493, 562, 691
LweI GCATC 3 cut(s) 462, 643, 764
MaeII ACGT 1 cut(s) 359
MalI GATC 2 cut(s) 197, 312
MboI GATC 2 cut(s) 195, 310
MboII GAAGA 5 cut(s) 57, 205, 310, 412, 858
MhlI GDGCHC 2 cut(s) 501, 550
MluCI AATT 2 cut(s) 76, 249
MlyI GAGTC 4 cut(s) 53, 191, 251, 618
MmeI TCCRAC 1 cut(s) 96
MseI TTAA 1 cut(s) 614
MslI CAYNNNNRTG 2 cut(s) 155, 719
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 5 cut(s) 440, 457, 481, 554, 584
NcoI CCATGG 1 cut(s) 444
NdeII GATC 2 cut(s) 195, 310
NlaIII CATG 5 cut(s) 154, 448, 490, 571, 877
NmeAIII GCCGAG 1 cut(s) 203
NspI RCATGY 2 cut(s) 154, 571
OliI CACNNNNGTG 1 cut(s) 719
PagI TCATGA 1 cut(s) 873
PceI AGGCCT 1 cut(s) 697
PkrI GCNGC 3 cut(s) 483, 577, 706
PleI GAGTC 4 cut(s) 53, 190, 250, 618
PmaCI CACGTG 1 cut(s) 360
PmlI CACGTG 1 cut(s) 360
PpsI GAGTC 4 cut(s) 53, 190, 250, 618
Ppu21I YACGTR 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 373
PspCI CACGTG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 1 cut(s) 373
RsaI GTAC 2 cut(s) 101, 407
RsaNI GTAC 2 cut(s) 100, 406
RseI CAYNNNNRTG 2 cut(s) 155, 719
SaqAI TTAA 1 cut(s) 614
SatI GCNGC 3 cut(s) 482, 576, 705
Sau3AI GATC 2 cut(s) 195, 310
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 4 cut(s) 53, 191, 251, 618
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 2 cut(s) 501, 550
SfaNI GCATC 3 cut(s) 462, 643, 764
SmiMI CAYNNNNRTG 2 cut(s) 155, 719
SmlI CTYRAG 3 cut(s) 209, 524, 671
SmoI CTYRAG 3 cut(s) 209, 524, 671
Sse9I AATT 2 cut(s) 76, 249
SseBI AGGCCT 1 cut(s) 697
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 2 cut(s) 444, 540
TaaI ACNGT 2 cut(s) 610, 718
TaiI ACGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 76, 249
TatI WGTACW 2 cut(s) 99, 405
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 4 cut(s) 192, 334, 613, 721
TseI GCWGC 3 cut(s) 481, 575, 704
TspDTI ATGAA 3 cut(s) 143, 311, 890
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 4 cut(s) 192, 334, 613, 721
VneI GTGCAC 1 cut(s) 497
XapI RAATTY 1 cut(s) 249
XceI RCATGY 2 cut(s) 154, 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.