RchiOBHm_Chr7g0235841

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60774369 .. 60776477
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21134

Sequence Viewer

Length: 1236 bp
ATGGCGGATACTAGGTCCCCCAATTCTGCTGCCGATGATGACCTAAAGAAACATGCAATGAGGGTTTTCAAGGAAGCGACCAAAGACTGTGCGGACATTGTCTTTGAAATAAAATTTGACATGATTCGGGACTACGAATCCCTTCATCAATGTGCAGTTGATTTGTTCAAATCTATAGCAAATACCGGCCTGGTTGACTTCCCCGAAGAGCTTAAGGCTCTCTCTGAGGCGGCCATACTGTCCGATGTGGCTGTACACACCATTGTCATTGGGGAATACTTCACTGCCCGAAAGACCAAGGCTACTCTCAAGGCCTTTCAGCACATGATAGCCACTGGTGTCGCCCCCAAATCCTGCAGTTACAGCCTGCTCATCACGGCCCTTGCATTAGACTTTTCTGATCCCAATTTTCTTGTGAATGCCAAGAAGTACTTTATGGAAATGTTGGTTAAGGGATTCAAGCCCAATTCTGGGTCCTACATGTTAGTGTTGGATGCCATTTCCTGCCGGGAGTCGGAGGGGAAGGCCAGGGAGTTCCTTGAACAGATCAAAGCCAAGGGGTTTGTCCCTGCACGTAATCTTTATCAATTTGAAGTAGGCCACGCCATAGAAGCGATGAGTGCAATGAAGATGTATGATGATCTGGAGGACAGCATAACTGATGAGGACATGCAAAAGGTCTTCTCAGAGTGGCGCACCAACCACGATCTCCTCACCAAAGAGTCGATGAAGATGTACACGGCTTTGATAGAGGATGATAATGTAGAGCAGGCAATGGAGATCTTTAGGGTCAATGCTGAGAGGGGCATACTTCCCATTGTTGTAGTCCACACCTGTGTTATTGAAGCCTACTTCAGTTTTGGCAAGACCAAGGATGCTCTGGAGGCATATCAGGGGATGTTGGCTGCTGGGGTTGCCCCAAATTGCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTCATTGGAGATGCCAAGAAGTGCTTGCTTGATATGATGGACAGGGGGATGAGGCCCAATGCTGCTACCTACACTGCAGTGTTAGAGGGTTTTGCAAGGAAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGCTGGTGAAGGTGATGATTCGTAAGGGGCATGGGCCAAAGGCAAAGGCTATGATGGAGGTTCTGAAAGGCAGCCCAACACCTTTAATAAGAAGGGTCCTGGACATCACCTTTTCCAAGTTGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

411

Amino Acids

45.87

Weight (kDa)

5.75

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 258 - 361 1.9e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 274 - 319 1.5e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 92, 230
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 838
AfaI GTAC 3 cut(s) 255, 431, 737
AfiI CCNNNNNNNGG 3 cut(s) 470, 471, 514
AflII CTTAAG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 8 cut(s) 70, 107, 169, 460, 542, 593, 845, 1228
AjnI CCWGG 3 cut(s) 189, 527, 1203
AleI CACNNNNGTG 2 cut(s) 834, 1049
AluBI AGCT 3 cut(s) 211, 1088, 1108
AluI AGCT 3 cut(s) 211, 1088, 1108
AlwI GGATC 1 cut(s) 395
AoxI GGCC 8 cut(s) 187, 231, 312, 378, 525, 598, 1025, 1139
ApeKI GCWGC 5 cut(s) 29, 905, 1034, 1085, 1176
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 6 cut(s) 15, 379, 474, 1026, 1139, 1201
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 4 cut(s) 706, 1123, 1129, 1204
AvaII GGWCC 3 cut(s) 15, 474, 1201
BbsI GAAGAC 1 cut(s) 673
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 5 cut(s) 16, 892, 1021, 1097, 1188
BccI CCATC 2 cut(s) 1003, 1153
BceAI ACGGC 2 cut(s) 393, 756
BciT130I CCWGG 3 cut(s) 191, 529, 1205
BcnI CCSGG 1 cut(s) 509
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 3 cut(s) 174, 355, 1047
BfrI CTTAAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 780
BisI GCNGC 6 cut(s) 30, 231, 906, 1035, 1086, 1177
BlsI GCNGC 6 cut(s) 31, 232, 907, 1036, 1087, 1178
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 4 cut(s) 191, 509, 529, 1205
Bme18I GGWCC 3 cut(s) 15, 474, 1201
BmgT120I GGNCC 6 cut(s) 15, 379, 474, 1026, 1139, 1201
BmiI GGNNCC 3 cut(s) 17, 475, 1202
BmrFI CCNGG 4 cut(s) 191, 509, 529, 1205
BmsI GCATC 3 cut(s) 484, 865, 973
BpiI GAAGAC 1 cut(s) 673
BpmI CTGGAG 2 cut(s) 665, 902
Bpu10I CCTNAGC 1 cut(s) 1089
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 297, 528, 555, 870
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 471, 514
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 3 cut(s) 63, 630, 780
BseBI CCWGG 3 cut(s) 191, 529, 1205
BseDI CCNNGG 4 cut(s) 297, 528, 555, 870
BseGI GGATG 5 cut(s) 499, 760, 880, 903, 1026
BseLI CCNNNNNNNGG 3 cut(s) 470, 471, 514
BseMI GCAATG 3 cut(s) 63, 630, 780
BseMII CTCAG 4 cut(s) 216, 699, 789, 1080
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 3 cut(s) 701, 1106, 1109
BseXI GCAGC 5 cut(s) 16, 892, 1021, 1097, 1188
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 2 cut(s) 174, 555
BshFI GGCC 8 cut(s) 189, 233, 314, 380, 527, 600, 1027, 1141
BsiSI CCGG 2 cut(s) 186, 508
BslFI GGGAC 3 cut(s) 143, 551, 966
BslI CCNNNNNNNGG 3 cut(s) 470, 471, 514
BsmFI GGGAC 3 cut(s) 143, 551, 966
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 8 cut(s) 189, 233, 314, 380, 527, 600, 1027, 1141
Bsp1407I TGTACA 2 cut(s) 253, 735
Bsp143I GATC 5 cut(s) 400, 546, 640, 706, 780
BspACI CCGC 3 cut(s) 5, 92, 230
BspANI GGCC 8 cut(s) 189, 233, 314, 380, 527, 600, 1027, 1141
BspCNI CTCAG 4 cut(s) 217, 698, 790, 1081
BspLI GGNNCC 3 cut(s) 17, 475, 1202
BspMAI CTGCAG 2 cut(s) 359, 1051
BspPI GGATC 1 cut(s) 395
BspQI GCTCTTC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 3 cut(s) 63, 630, 780
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 2 cut(s) 253, 735
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 297, 528, 555, 870
BssMI GATC 5 cut(s) 400, 546, 640, 706, 780
BssT1I CCWWGG 3 cut(s) 297, 555, 870
Bst2UI CCWGG 3 cut(s) 191, 529, 1205
Bst4CI ACNGT 3 cut(s) 89, 240, 940
Bst6I CTCTTC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 212
BstAUI TGTACA 2 cut(s) 253, 735
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 368, 771, 998
BstDEI CTNAG 4 cut(s) 225, 685, 798, 1089
BstF5I GGATG 5 cut(s) 499, 760, 880, 903, 1026
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 5 cut(s) 403, 549, 643, 709, 783
BstMBI GATC 5 cut(s) 400, 546, 640, 706, 780
BstMWI GCNNNNNNNGC 5 cut(s) 363, 611, 620, 884, 914
BstNI CCWGG 3 cut(s) 191, 529, 1205
BstNSI RCATGY 3 cut(s) 56, 484, 673
BstSCI CCNGG 4 cut(s) 189, 507, 527, 1203
BstSFI CTRYAG 3 cut(s) 174, 355, 1047
BstV1I GCAGC 5 cut(s) 16, 892, 1021, 1097, 1188
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 8 cut(s) 189, 233, 314, 380, 527, 600, 1027, 1141
BtgZI GCGATG 1 cut(s) 629
BtsCI GGATG 5 cut(s) 499, 760, 880, 903, 1026
BtsI GCAGTG 4 cut(s) 282, 957, 1044, 1056
BtsIMutI CAGTG 6 cut(s) 282, 333, 936, 957, 1044, 1056
Cac8I GCNNGC 3 cut(s) 368, 771, 998
CfoI GCGC 1 cut(s) 696
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 6 cut(s) 15, 379, 474, 1026, 1139, 1201
Csp6I GTAC 3 cut(s) 254, 430, 736
CviAII CATG 6 cut(s) 53, 121, 325, 481, 670, 1136
CviQI GTAC 3 cut(s) 254, 430, 736
DdeI CTNAG 4 cut(s) 225, 685, 798, 1089
DpnI GATC 5 cut(s) 402, 548, 642, 708, 782
DpnII GATC 5 cut(s) 400, 546, 640, 706, 780
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 297, 555, 870
Eco147I AGGCCT 1 cut(s) 314
Eco47I GGWCC 3 cut(s) 15, 474, 1201
Eco57I CTGAAG 1 cut(s) 838
EcoO109I RGGNCCY 3 cut(s) 15, 474, 1201
EcoRII CCWGG 3 cut(s) 189, 527, 1203
EcoT14I CCWWGG 3 cut(s) 297, 555, 870
ErhI CCWWGG 3 cut(s) 297, 555, 870
FaeI CATG 6 cut(s) 56, 124, 328, 484, 673, 1139
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 980, 1012
FaqI GGGAC 3 cut(s) 143, 551, 966
FatI CATG 6 cut(s) 52, 120, 324, 480, 669, 1135
Fnu4HI GCNGC 6 cut(s) 30, 231, 906, 1035, 1086, 1177
FokI GGATG 5 cut(s) 506, 767, 887, 910, 1033
Fsp4HI GCNGC 6 cut(s) 30, 231, 906, 1035, 1086, 1177
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 695
GluI GCNGC 6 cut(s) 30, 231, 906, 1035, 1086, 1177
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 2 cut(s) 665, 902
HaeIII GGCC 8 cut(s) 189, 233, 314, 380, 527, 600, 1027, 1141
HapII CCGG 2 cut(s) 186, 508
HhaI GCGC 1 cut(s) 696
Hin1II CATG 6 cut(s) 56, 124, 328, 484, 673, 1139
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 7 cut(s) 124, 137, 456, 512, 722, 954, 1123
HpaII CCGG 2 cut(s) 186, 508
HphI GGTGA 4 cut(s) 706, 1123, 1129, 1204
Hpy166II GTNNAC 4 cut(s) 196, 256, 738, 829
Hpy188I TCNGA 6 cut(s) 226, 244, 400, 517, 688, 1170
Hpy188III TCNNGA 3 cut(s) 128, 644, 881
Hpy8I GTNNAC 4 cut(s) 196, 256, 738, 829
HpyAV CCTTC 6 cut(s) 152, 517, 1066, 1108, 1191, 1222
HpyCH4III ACNGT 3 cut(s) 89, 240, 940
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 9 cut(s) 56, 155, 357, 386, 572, 623, 673, 1049, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 363, 611, 620, 884, 914
HpyF3I CTNAG 4 cut(s) 225, 685, 798, 1089
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 6 cut(s) 56, 124, 328, 484, 673, 1139
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 5 cut(s) 400, 546, 640, 706, 780
LguI GCTCTTC 1 cut(s) 201
Lsp1109I GCAGC 5 cut(s) 16, 892, 1021, 1097, 1188
LweI GCATC 3 cut(s) 484, 865, 973
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 1 cut(s) 359
MalI GATC 5 cut(s) 402, 548, 642, 708, 782
MboI GATC 5 cut(s) 400, 546, 640, 706, 780
MboII GAAGA 4 cut(s) 218, 640, 673, 742
MflI RGATCY 1 cut(s) 780
MluCI AATT 6 cut(s) 22, 113, 406, 466, 587, 922
MlyI GAGTC 3 cut(s) 521, 731, 948
MmeI TCCRAC 2 cut(s) 471, 495
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 4 cut(s) 213, 450, 944, 1190
MslI CAYNNNNRTG 4 cut(s) 150, 485, 834, 1049
MspA1I CMGCKG 1 cut(s) 1088
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 2 cut(s) 186, 508
MspR9I CCNGG 4 cut(s) 191, 509, 529, 1205
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 191, 529, 1205
MwoI GCNNNNNNNGC 5 cut(s) 363, 611, 620, 884, 914
NciI CCSGG 1 cut(s) 509
NdeII GATC 5 cut(s) 400, 546, 640, 706, 780
NlaIII CATG 6 cut(s) 56, 124, 328, 484, 673, 1139
NlaIV GGNNCC 3 cut(s) 17, 475, 1202
NspI RCATGY 3 cut(s) 56, 484, 673
OliI CACNNNNGTG 2 cut(s) 834, 1049
PceI AGGCCT 1 cut(s) 314
PciI ACATGT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 4 cut(s) 124, 137, 456, 1123
PflFI GACNNNGTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 1203
PkrI GCNGC 6 cut(s) 31, 232, 907, 1036, 1087, 1178
PleI GAGTC 3 cut(s) 520, 730, 948
PpsI GAGTC 3 cut(s) 520, 730, 948
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 3 cut(s) 15, 474, 1201
PscI ACATGT 1 cut(s) 480
Psp5II RGGWCCY 3 cut(s) 15, 474, 1201
Psp6I CCWGG 3 cut(s) 189, 527, 1203
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 3 cut(s) 189, 527, 1203
PspN4I GGNNCC 3 cut(s) 17, 475, 1202
PspPI GGNCC 6 cut(s) 15, 379, 474, 1026, 1139, 1201
PspPPI RGGWCCY 3 cut(s) 15, 474, 1201
PstI CTGCAG 2 cut(s) 359, 1051
PsuI RGATCY 1 cut(s) 780
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 3 cut(s) 255, 431, 737
RsaNI GTAC 3 cut(s) 254, 430, 736
RseI CAYNNNNRTG 4 cut(s) 150, 485, 834, 1049
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 4 cut(s) 213, 450, 944, 1190
SatI GCNGC 6 cut(s) 30, 231, 906, 1035, 1086, 1177
Sau3AI GATC 5 cut(s) 400, 546, 640, 706, 780
Sau96I GGNCC 6 cut(s) 15, 379, 474, 1026, 1139, 1201
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 3 cut(s) 521, 731, 948
ScrFI CCNGG 4 cut(s) 191, 509, 529, 1205
SfaNI GCATC 3 cut(s) 484, 865, 973
SfcI CTRYAG 3 cut(s) 174, 355, 1047
SinI GGWCC 3 cut(s) 15, 474, 1201
SmiMI CAYNNNNRTG 4 cut(s) 150, 485, 834, 1049
SmlI CTYRAG 2 cut(s) 212, 308
SmoI CTYRAG 2 cut(s) 212, 308
Sse9I AATT 6 cut(s) 22, 113, 406, 466, 587, 922
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 3 cut(s) 5, 92, 230
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 4 cut(s) 189, 507, 527, 1203
StyI CCWWGG 3 cut(s) 297, 555, 870
TaaI ACNGT 3 cut(s) 89, 240, 940
TaiI ACGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 725
TasI AATT 6 cut(s) 22, 113, 406, 466, 587, 922
TatI WGTACW 3 cut(s) 253, 429, 735
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 124, 137, 456, 1123
Tru1I TTAA 4 cut(s) 213, 450, 944, 1190
Tru9I TTAA 4 cut(s) 213, 450, 944, 1190
TscAI CASTG 6 cut(s) 289, 340, 943, 964, 1051, 1056
TseI GCWGC 5 cut(s) 29, 905, 1034, 1085, 1176
TspDTI ATGAA 4 cut(s) 134, 641, 743, 964
TspRI CASTG 6 cut(s) 289, 340, 943, 964, 1051, 1056
Tth111I GACNNNGTC 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 3 cut(s) 15, 474, 1201
XapI RAATTY 1 cut(s) 113
XceI RCATGY 3 cut(s) 56, 484, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.