Rmu_sc0011173.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011173.1
OG0000101
Physical Location & Seq
Forward (+)
1762 .. 2325
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011173.1_g000002.1.cds

Sequence Viewer

Length: 564 bp
atgttcaaagccttgaaagccgatggcaattatgaccaggccatggagctctataggcccggttgggatacaaacacaattccagcggtcgtacttcacaccggtgttattgaagactgtcttgcggctggcaataccgagtgtgctctgaaggcttaccggaccatgttagttactggggttgccctaaactcctatacatacactgttttaattaagggactcactactgaccccaatttctgtggggatgccaagaggtgcttgcttgagatgatggagagggggatgagacccaatgctgctacatacactgcggtgattgagggatttgcgaagcaggaggacaaggtagctgaggaggagggcaaacagttggtggaggtgatgatgggcaacgggtttgtgccaaatgcaaaggccatgatggaggttttgaagggcatttggctccaaaaccagtctagtgtgcaaacagtctcttttgagtgcgcgagcgtgccagcaccgtgcagtacagttgtcggggcgtcccttgacctgacttctgaatcaaaggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

187

Amino Acids

20.27

Weight (kDa)

4.8

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 1 cut(s) 494
AciI CCGC 3 cut(s) 86, 125, 317
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 2 cut(s) 93, 517
AfiI CCNNNNNNNGG 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 4 cut(s) 7, 16, 113, 439
AjnI CCWGG 1 cut(s) 36
AleI CACNNNNGTG 2 cut(s) 102, 317
AluBI AGCT 2 cut(s) 49, 356
AluI AGCT 2 cut(s) 49, 356
Alw21I GWGCWC 2 cut(s) 51, 148
Alw26I GTCTC 2 cut(s) 286, 484
AoxI GGCC 3 cut(s) 39, 56, 420
ApeKI GCWGC 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 1 cut(s) 494
AspS9I GGNCC 2 cut(s) 57, 162
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 331, 397
AvaII GGWCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 51, 148
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 289
BccI CCATC 4 cut(s) 17, 271, 385, 421
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 286, 484
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 126, 303
BlsI GCNGC 2 cut(s) 127, 304
Bme1390I CCNGG 2 cut(s) 38, 60
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 57, 162
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 2 cut(s) 38, 60
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 101, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 181, 460
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 256, 294
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 181, 460
BseRI GAGGAG 2 cut(s) 374, 377
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 494
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 41, 58, 422
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 51, 148
BsiSI CCGG 3 cut(s) 60, 102, 160
BslFI GGGAC 2 cut(s) 234, 517
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 286, 484
BsmFI GGGAC 2 cut(s) 234, 517
BsnI GGCC 3 cut(s) 41, 58, 422
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 51, 148
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 3 cut(s) 86, 125, 317
BspANI GGCC 3 cut(s) 41, 58, 422
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 181, 460
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 6 cut(s) 119, 208, 375, 478, 510, 520
BstACI GRCGYC 1 cut(s) 530
BstC8I GCNNGC 5 cut(s) 130, 266, 496, 500, 504
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 256, 294
BstFNI CGCG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 494
BstMAI GTCTC 2 cut(s) 286, 484
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 17, 55, 152
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 36, 58
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 3 cut(s) 41, 58, 422
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 256, 294
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 204, 312
Cac8I GCNNGC 5 cut(s) 130, 266, 496, 500, 504
CfoI GCGC 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 57, 162
CseI GACGC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 92, 516
CspAI ACCGGT 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 3 cut(s) 43, 166, 424
CviQI GTAC 2 cut(s) 92, 516
DdeI CTNAG 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 46, 169, 427
FaiI YATR 8 cut(s) 33, 44, 54, 167, 198, 202, 310, 425
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 248, 280
FaqI GGGAC 2 cut(s) 234, 517
FatI CATG 3 cut(s) 42, 165, 423
Fnu4HI GCNGC 2 cut(s) 126, 303
FokI GGATG 2 cut(s) 263, 301
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 126, 303
FspBI CTAG 1 cut(s) 465
GlaI GCGC 1 cut(s) 493
GluI GCNGC 2 cut(s) 126, 303
HaeIII GGCC 3 cut(s) 41, 58, 422
HapII CCGG 3 cut(s) 60, 102, 160
HgaI GACGC 1 cut(s) 519
HhaI GCGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 3 cut(s) 46, 169, 427
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HinfI GANTC 2 cut(s) 222, 551
HpaII CCGG 3 cut(s) 60, 102, 160
HphI GGTGA 2 cut(s) 331, 397
Hpy188I TCNGA 2 cut(s) 150, 550
HpyAV CCTTC 2 cut(s) 145, 433
HpyCH4III ACNGT 6 cut(s) 119, 208, 375, 478, 510, 520
HpyCH4V TGCA 3 cut(s) 416, 472, 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 55, 152
HpyF3I CTNAG 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 3 cut(s) 46, 169, 427
HspAI GCGC 1 cut(s) 492
LmnI GCTCC 2 cut(s) 46, 456
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 51, 148
MluCI AATT 4 cut(s) 28, 78, 213, 238
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 9 cut(s) 252, 276, 319, 337, 352, 355, 358, 376, 424
MseI TTAA 2 cut(s) 212, 216
MslI CAYNNNNRTG 2 cut(s) 102, 317
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 60, 102, 160
MspR9I CCNGG 2 cut(s) 38, 60
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 17, 55, 152
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 42
NlaIII CATG 3 cut(s) 46, 169, 427
NlaIV GGNNCC 1 cut(s) 452
OliI CACNNNNGTG 2 cut(s) 102, 317
PacI TTAATTAA 1 cut(s) 216
PfeI GAWTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 2 cut(s) 127, 304
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 452
PspPI GGNCC 2 cut(s) 57, 162
RsaI GTAC 2 cut(s) 93, 517
RsaNI GTAC 2 cut(s) 92, 516
RseI CAYNNNNRTG 2 cut(s) 102, 317
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 212, 216
SatI GCNGC 2 cut(s) 126, 303
Sau96I GGNCC 2 cut(s) 57, 162
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 2 cut(s) 38, 60
SduI GDGCHC 2 cut(s) 51, 148
SetI ASST 7 cut(s) 51, 263, 354, 358, 387, 435, 543
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 102, 317
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 28, 78, 213, 238
SsiI CCGC 3 cut(s) 86, 125, 317
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 36, 58
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 6 cut(s) 119, 208, 375, 478, 510, 520
TasI AATT 4 cut(s) 28, 78, 213, 238
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 212, 216
Tru9I TTAA 2 cut(s) 212, 216
TscAI CASTG 2 cut(s) 211, 319
TseI GCWGC 1 cut(s) 302
TspRI CASTG 2 cut(s) 211, 319
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 162
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.