RchiOBHm_Chr7g0235931

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60832213 .. 60832839
627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21143

Sequence Viewer

Length: 627 bp
ATGAAGGTTCTTAAGAAGGCGACCAAATACTGTGAGGACAAGGACCTGAAAGAAATGTGTGACATGAATATTGGGGACTACGACTCCCTTAACGAGTATGCGATTAAGGTGTTCGATGCTATGGCAAATGACACCCTCGCTGATGAAGCCAAAGAGCTGTTTAAGCCTCGCTCTGAGTCGGCCGTACTGCCTGACGTGGCCATCTACACCATTGTCATTTGGGCCTGCATCTGTTCCAGCAAGATCAAGGCTGCTCACAACGTCTACCTGTATATGATAGCTAACGGTGTCACCCCCATCTCCTGCACTTACATTATACTCATCAACACACTTGCAAATAACTCATCTTCTTATGTCAATTTTGTTCGGTGTGCCAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGACGCCTCCTTCATCTTCCTACATGGCCGTCTTCAAAGCCATTGCACGCCAGGAGCCGGTGGTGAAGGCCAAGGAGTTCCTTGAGCAGATACAAGCAAAGGGGTTCAGCCCTAAGTTGGACGTTCCTCACTTTGATGTGGCCTACATGGAAGAAGCAATGAAGGCATTGAAGATGGCTGACGTTCTTATCAACGCTAAGAAGTTGCAAAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

208

Amino Acids

23.42

Weight (kDa)

8.09

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 64 - 113 9.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AcoI YGGCCR 3 cut(s) 180, 198, 435
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 466, 526
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 445, 580
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 157, 281
AluI AGCT 2 cut(s) 157, 281
AoxI GGCC 6 cut(s) 180, 198, 222, 435, 477, 549
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 43, 222
AsuHPI GGTGA 2 cut(s) 283, 484
AvaII GGWCC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 209, 305, 577
BceAI ACGGC 2 cut(s) 167, 422
BciT130I CCWGG 1 cut(s) 461
BfaI CTAG 1 cut(s) 625
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 43, 222
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 106, 237
BpiI GAAGAC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 480
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 466, 526
Bse118I RCCGGY 1 cut(s) 466
Bse3DI GCAATG 2 cut(s) 450, 573
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 466, 526
BseMI GCAATG 2 cut(s) 450, 573
BseMII CTCAG 1 cut(s) 165
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 6 cut(s) 182, 200, 224, 437, 479, 551
BsiEI CGRYCG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 466, 526
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 6 cut(s) 182, 200, 224, 437, 479, 551
Bsp143I GATC 1 cut(s) 243
BspANI GGCC 6 cut(s) 182, 200, 224, 437, 479, 551
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 450, 573
BsrFI RCCGGY 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 32, 287
BstACI GRCGYC 1 cut(s) 413
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 226, 457
BstDEI CTNAG 3 cut(s) 174, 522, 606
BstF5I GGATG 1 cut(s) 414
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 146, 163, 572
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 433
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 6 cut(s) 182, 200, 224, 437, 479, 551
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 226, 457
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 43, 222
CseI GACGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 185
CviAII CATG 3 cut(s) 64, 433, 556
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 3 cut(s) 174, 522, 606
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EaeI YGGCCR 3 cut(s) 180, 198, 435
EagI CGGCCG 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 43
Eco52I CGGCCG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 3 cut(s) 67, 436, 559
FaiI YATR 9 cut(s) 65, 99, 122, 273, 275, 317, 354, 434, 557
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 63, 432, 555
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 625
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 6 cut(s) 182, 200, 224, 437, 479, 551
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 3 cut(s) 67, 436, 559
HinfI GANTC 2 cut(s) 83, 176
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 283, 484
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 10, 429, 469, 565
HpyCH4III ACNGT 2 cut(s) 32, 287
HpyCH4IV ACGT 4 cut(s) 195, 261, 531, 591
HpyCH4V TGCA 5 cut(s) 228, 306, 335, 455, 616
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 163, 572
HpyF3I CTNAG 3 cut(s) 174, 522, 606
HpySE526I ACGT 4 cut(s) 195, 261, 531, 591
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 3 cut(s) 67, 436, 559
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 9 cut(s) 59, 204, 238, 250, 281, 316, 446, 473, 480
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 106, 237
MaeI CTAG 1 cut(s) 625
MaeII ACGT 4 cut(s) 195, 261, 531, 591
MaeIII GTNAC 2 cut(s) 59, 289
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 5 cut(s) 339, 417, 433, 572, 592
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 358
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 77, 185
MmeI TCCRAC 2 cut(s) 378, 507
MnlI CCTC 5 cut(s) 28, 146, 177, 426, 546
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 12, 90, 105, 162
MslI CAYNNNNRTG 1 cut(s) 543
Msp20I TGGCCA 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 146, 163, 572
NdeII GATC 1 cut(s) 243
NlaIII CATG 3 cut(s) 67, 436, 559
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 59, 289
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 77, 184
PpsI GAGTC 2 cut(s) 77, 184
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 43, 222
PspPPI RGGWCCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 4 cut(s) 12, 90, 105, 162
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 43, 222
SchI GAGTC 2 cut(s) 77, 185
ScrFI CCNGG 1 cut(s) 461
SfaNI GCATC 2 cut(s) 106, 237
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 11, 491
SmoI CTYRAG 2 cut(s) 11, 491
Sse9I AATT 1 cut(s) 358
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 625
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 32, 287
TaiI ACGT 4 cut(s) 198, 264, 534, 594
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 358
Tru1I TTAA 4 cut(s) 12, 90, 105, 162
Tru9I TTAA 4 cut(s) 12, 90, 105, 162
TseFI GTSAC 2 cut(s) 59, 289
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 59, 289
TspDTI ATGAA 5 cut(s) 17, 80, 159, 411, 584
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.