RchiOBHm_Chr7g0236331

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Reverse (-)
61182036 .. 61183905
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21178

Sequence Viewer

Length: 1137 bp
ATGGAGGGCACTAGTTTCCCCAATTCTTCCGCCGATGGCCTCAAGAAACATGTAATGAAGGTTTTCGAGGAGGCCACCAAAGACTGTGAGGACAAGGTCTTGAAAGAAATTCGGGACTACGACTCCCTTAACAAGTATGCCATTCAACTCTTCAATATATTGGCAAATAACACCCTCGCTGAGGAAGCCAAAGAGCTCTTTAAGCCTTGCTCTGACTCTGCCGTGCTGCCTGATGTTGCCGTCTTCACTATTGTCATTCGGGCCTACGCCTATGCCGGCAAGACCAAGGCTGCCCTCAAGGTCTACCAGCAGATGATAGCCACCGGTTATTTTTTAGAAATGTTAGATAAGGGGATGAAGCCACATTCTGCCTCCTACATGACTGTGTTCAACGCCATTGCCTGTCGGGAGTCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAGATACAAGCAAAGGGGTTTACCCCTGAGTCCAAAGTTCATCACTTTGAAGAAGGCCACCTCACTGAAGCAATGAATGCAATGAAGTTGTATGATGATCTTGTCAACAAGACCACTGACAAGAAGATGCAAAAAGTCTTCCGCAAGTGGCGTACAGCCGGCGGTGGCCTTGCCAAGAAAGAGTCATTGGAGATGTTTGGTGCTTTGATAGATGATGGCTATGTAGACGAGGCCAACGAGCTTTTTAAGCGCATTTGTGAGACGGGTGTATATCCCATGGTCACAAATCACACCAGCGTTATTCAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCGGGGCATGTTAGCTTCAGGGGTTGCTCCAAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTATTGACCCCAATTTCTGTGGAGATGCCAAGAAGTGCATTCTTGATATGATGGACAGGGGCATAAGGCCCAATCCTGCTACCTACACTGCAGTGATAGAGGGATTTGCGAAGCAGGAGGACGAGGCAGCTGAGGAGGAGGCCAAAGACTTGGTGGACGTAATGATGAGTGAGGGATTTGTGCCAAACGCAAAGGCTATGATGGAGGTTCTGAAGGGAAGGCCAACTCCTCTTATAAGAAGGGTCATAAACATTGTCCTTTCCAAGTTGAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

378

Amino Acids

42.16

Weight (kDa)

6.63

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 236 - 327 5.5e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 245 - 286 1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1094
AccI GTMKAC 2 cut(s) 303, 666
AciI CCGC 3 cut(s) 30, 583, 603
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 3 cut(s) 528, 792, 1091
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 7 cut(s) 103, 146, 154, 391, 491, 746, 1129
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AleI CACNNNNGTG 1 cut(s) 950
AluBI AGCT 4 cut(s) 196, 682, 806, 989
AluI AGCT 4 cut(s) 196, 682, 806, 989
Alw21I GWGCWC 2 cut(s) 198, 781
Alw26I GTCTC 1 cut(s) 695
ApeKI GCWGC 3 cut(s) 226, 290, 986
ApoI RAATTY 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 261, 927
AsuC2I CCSGG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 235, 571
Bbv12I GWGCWC 2 cut(s) 198, 781
BbvCI CCTCAGC 2 cut(s) 180, 990
BbvI GCAGC 3 cut(s) 213, 277, 998
BccI CCATC 4 cut(s) 29, 650, 904, 1054
BceAI ACGGC 2 cut(s) 206, 224
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 695
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 948
BisI GCNGC 3 cut(s) 227, 291, 987
BlsI GCNGC 3 cut(s) 228, 292, 988
Bme1390I CCNGG 2 cut(s) 427, 794
BmgT120I GGNCC 2 cut(s) 261, 927
BmrFI CCNGG 2 cut(s) 427, 794
BmsI GCATC 2 cut(s) 558, 874
BpiI GAAGAC 2 cut(s) 235, 571
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 2 cut(s) 180, 990
BpuEI CTTGAG 4 cut(s) 26, 281, 458, 740
BpuMI CCSGG 1 cut(s) 794
BsaJI CCNNGG 5 cut(s) 285, 426, 717, 771, 793
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 3 cut(s) 275, 323, 599
Bse3DI GCAATG 3 cut(s) 396, 519, 528
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 5 cut(s) 285, 426, 717, 771, 793
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 3 cut(s) 396, 519, 528
BseMII CTCAG 3 cut(s) 171, 459, 981
BseRI GAGGAG 4 cut(s) 83, 1007, 1010, 1077
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 213, 277, 998
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 2 cut(s) 198, 781
BsiSI CCGG 4 cut(s) 276, 324, 600, 793
BslFI GGGAC 2 cut(s) 128, 867
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 695
BsmBI CGTCTC 1 cut(s) 695
BsmFI GGGAC 2 cut(s) 128, 867
BsmI GAATGC 2 cut(s) 523, 897
Bsp1286I GDGCHC 3 cut(s) 11, 198, 781
Bsp143I GATC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 3 cut(s) 30, 583, 603
BspCNI CTCAG 3 cut(s) 172, 460, 982
BspMAI CTGCAG 1 cut(s) 952
BsrDI GCAATG 3 cut(s) 396, 519, 528
BsrFI RCCGGY 3 cut(s) 275, 323, 599
BssAI RCCGGY 3 cut(s) 275, 323, 599
BssECI CCNNGG 5 cut(s) 285, 426, 717, 771, 793
BssMI GATC 1 cut(s) 538
BssT1I CCWWGG 3 cut(s) 285, 717, 771
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 3 cut(s) 86, 385, 841
Bst6I CTCTTC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 277, 601
BstDEI CTNAG 3 cut(s) 180, 468, 990
BstDSI CCRYGG 1 cut(s) 717
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 5 cut(s) 185, 202, 518, 688, 785
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 2 cut(s) 53, 802
BstSCI CCNGG 2 cut(s) 425, 792
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 213, 277, 998
BstV2I GAAGAC 2 cut(s) 235, 571
BstXI CCANNNNNNTGG 1 cut(s) 1009
BtgI CCRYGG 1 cut(s) 717
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 2 cut(s) 945, 957
BtsIMutI CAGTG 5 cut(s) 504, 555, 837, 945, 957
Cac8I GCNNGC 2 cut(s) 277, 601
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 3 cut(s) 275, 323, 599
Cfr13I GGNCC 2 cut(s) 261, 927
Csp6I GTAC 1 cut(s) 594
CspAI ACCGGT 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 4 cut(s) 50, 379, 718, 799
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 3 cut(s) 180, 468, 990
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 285, 717, 771
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 528, 792, 1091
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 3 cut(s) 285, 717, 771
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 3 cut(s) 285, 717, 771
Esp3I CGTCTC 1 cut(s) 695
FaeI CATG 4 cut(s) 53, 382, 721, 802
FaqI GGGAC 2 cut(s) 128, 867
FatI CATG 4 cut(s) 49, 378, 717, 798
FblI GTMKAC 2 cut(s) 303, 666
Fnu4HI GCNGC 3 cut(s) 227, 291, 987
FokI GGATG 1 cut(s) 367
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 227, 291, 987
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 692
GluI GCNGC 3 cut(s) 227, 291, 987
GsuI CTGGAG 1 cut(s) 803
HapII CCGG 4 cut(s) 276, 324, 600, 793
HhaI GCGC 1 cut(s) 693
Hin1II CATG 4 cut(s) 53, 382, 721, 802
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 6 cut(s) 122, 215, 410, 470, 623, 855
HpaII CCGG 4 cut(s) 276, 324, 600, 793
Hpy166II GTNNAC 5 cut(s) 304, 462, 547, 667, 1015
Hpy188I TCNGA 2 cut(s) 214, 1071
Hpy188III TCNNGA 6 cut(s) 43, 100, 113, 407, 782, 902
Hpy8I GTNNAC 5 cut(s) 304, 462, 547, 667, 1015
HpyAV CCTTC 7 cut(s) 52, 415, 488, 1066, 1071, 1092, 1123
HpyCH4III ACNGT 3 cut(s) 86, 385, 841
HpyCH4IV ACGT 1 cut(s) 1017
HpyCH4V TGCA 4 cut(s) 521, 571, 897, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 202, 518, 688, 785
HpyF3I CTNAG 3 cut(s) 180, 468, 990
HpySE526I ACGT 1 cut(s) 1017
Hsp92II CATG 4 cut(s) 53, 382, 721, 802
HspAI GCGC 1 cut(s) 691
KroI GCCGGC 2 cut(s) 275, 599
KroNI GCCGGC 2 cut(s) 277, 601
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 3 cut(s) 213, 277, 998
LweI GCATC 2 cut(s) 558, 874
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 1 cut(s) 721
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 6 cut(s) 18, 142, 235, 503, 571, 577
MhlI GDGCHC 3 cut(s) 11, 198, 781
MluCI AATT 3 cut(s) 22, 108, 871
MlyI GAGTC 6 cut(s) 116, 209, 419, 479, 632, 849
MroNI GCCGGC 2 cut(s) 275, 599
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 4 cut(s) 129, 201, 687, 845
MslI CAYNNNNRTG 2 cut(s) 383, 950
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 4 cut(s) 276, 324, 600, 793
MspR9I CCNGG 2 cut(s) 427, 794
Mva1269I GAATGC 2 cut(s) 523, 897
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 5 cut(s) 185, 202, 518, 688, 785
NaeI GCCGGC 2 cut(s) 277, 601
NciI CCSGG 1 cut(s) 794
NcoI CCATGG 1 cut(s) 717
NdeII GATC 1 cut(s) 538
NgoMIV GCCGGC 2 cut(s) 275, 599
NlaIII CATG 4 cut(s) 53, 382, 721, 802
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 2 cut(s) 53, 802
OliI CACNNNNGTG 1 cut(s) 950
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PctI GAATGC 2 cut(s) 523, 897
PdiI GCCGGC 2 cut(s) 277, 601
PdmI GAANNNNTTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 3 cut(s) 228, 292, 988
PleI GAGTC 6 cut(s) 116, 209, 418, 478, 631, 849
PpsI GAGTC 6 cut(s) 116, 209, 418, 478, 631, 849
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 1094
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspPI GGNCC 2 cut(s) 261, 927
PstI CTGCAG 1 cut(s) 952
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 2 cut(s) 383, 950
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 129, 201, 687, 845
SatI GCNGC 3 cut(s) 227, 291, 987
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 2 cut(s) 261, 927
SchI GAGTC 6 cut(s) 116, 209, 419, 479, 632, 849
ScrFI CCNGG 2 cut(s) 427, 794
SduI GDGCHC 3 cut(s) 11, 198, 781
SfaNI GCATC 2 cut(s) 558, 874
SfcI CTRYAG 1 cut(s) 948
SmiMI CAYNNNNRTG 2 cut(s) 383, 950
SmlI CTYRAG 4 cut(s) 41, 296, 437, 755
SmoI CTYRAG 4 cut(s) 41, 296, 437, 755
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 22, 108, 871
SsiI CCGC 3 cut(s) 30, 583, 603
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 425, 792
StyI CCWWGG 3 cut(s) 285, 717, 771
TaaI ACNGT 3 cut(s) 86, 385, 841
TaiI ACGT 1 cut(s) 1020
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 22, 108, 871
Tru1I TTAA 4 cut(s) 129, 201, 687, 845
Tru9I TTAA 4 cut(s) 129, 201, 687, 845
TscAI CASTG 5 cut(s) 511, 562, 844, 952, 957
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 3 cut(s) 226, 290, 986
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 5 cut(s) 71, 371, 470, 530, 539
TspRI CASTG 5 cut(s) 511, 562, 844, 952, 957
Tth111I GACNNNGTC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 108
XceI RCATGY 2 cut(s) 53, 802
XcmI CCANNNNNNNNNTGG 2 cut(s) 778, 1009
XmiI GTMKAC 2 cut(s) 303, 666
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.