RLG00000001073

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Forward (+)
10114916 .. 10115534
619 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001073

Sequence Viewer

Length: 585 bp
ATGGAGGACACTAGCTTCCCCAATTCTTGTGCCGATGACCTTAAGAACCATGTAATGAAGGTTTTCGAGGAGGCCACCAAAGACTGCGAGGACAAGGTCTTGAAAGAAATATTTGACTTGATTAGGAACTATGACGACCTTAACGAATTTGGGATCCAAGTGTTCAATTTGTTGGCAAATTCCGGCCAGGCTAATGAAGCCAAAGAGCTATTCAGGCCTCTCGCTGTGCCGGCTGTATTGCCGGATGTGCCTGTCCTCACAATGGCCAAGGCTGCTCTCAAGGCCTATCAGCACATGTTAGCCACTGCTGTCACCCCCACCTCCGCTACTTACAATGCACTCATCACAGCATTTACAGAAGACTCGTCTTCTGATTCCAGTTTTGTTGGCTATGCTAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGAAGCCCCATCCTGGTTGCTATATATCTGTGTTTGACGCCATTGCCTGTCGTGAGTCAGTGGACAAGGCCAAGGAGGTCCTTGAGCAAATAAAAGCAAAGGGGTTTACTCCTGTCAACTATCTTTATCGCTTTGAAGAACGCCACCTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

195

Amino Acids

21.75

Weight (kDa)

5.04

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 148, 161
AcoI YGGCCR 2 cut(s) 184, 264
AcsI RAATTY 2 cut(s) 146, 178
AcyI GRCGYC 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 262, 443
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 3 cut(s) 103, 166, 566
AjnI CCWGG 2 cut(s) 186, 442
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 392, 424
AluBI AGCT 2 cut(s) 15, 208
AluI AGCT 2 cut(s) 15, 208
AlwI GGATC 2 cut(s) 148, 161
AoxI GGCC 6 cut(s) 72, 184, 215, 264, 282, 498
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 360, 366
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 188, 444
BfaI CTAG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 188, 444
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 2 cut(s) 188, 444
BpiI GAAGAC 2 cut(s) 360, 366
BpuEI CTTGAG 2 cut(s) 263, 533
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 267, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 443
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 188, 444
BseDI CCNNGG 2 cut(s) 267, 501
BseGI GGATG 3 cut(s) 250, 435, 439
BseLI CCNNNNNNNGG 2 cut(s) 262, 443
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 6 cut(s) 74, 186, 217, 266, 284, 500
BsiSI CCGG 3 cut(s) 183, 230, 242
BslI CCNNNNNNNGG 2 cut(s) 262, 443
BsnI GGCC 6 cut(s) 74, 186, 217, 266, 284, 500
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 324
BspANI GGCC 6 cut(s) 74, 186, 217, 266, 284, 500
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 2 cut(s) 148, 161
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 267, 501
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 267, 501
Bst2UI CCWGG 2 cut(s) 188, 444
BstACI GRCGYC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 250, 435, 439
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 6 cut(s) 197, 214, 230, 247, 272, 281
BstNI CCWGG 2 cut(s) 188, 444
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 186, 442
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 2 cut(s) 360, 366
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 6 cut(s) 74, 186, 217, 266, 284, 500
BtsCI GGATG 3 cut(s) 250, 435, 439
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 303, 495
Cac8I GCNNGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 1 cut(s) 476
CviAII CATG 2 cut(s) 50, 295
DdeI CTNAG 1 cut(s) 396
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 184, 264
Eco130I CCWWGG 2 cut(s) 267, 501
Eco147I AGGCCT 2 cut(s) 217, 284
Eco47I GGWCC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 186, 442
EcoT14I CCWWGG 2 cut(s) 267, 501
ErhI CCWWGG 2 cut(s) 267, 501
FaeI CATG 2 cut(s) 53, 298
FaiI YATR 7 cut(s) 51, 132, 296, 393, 453, 455, 583
FatI CATG 2 cut(s) 49, 294
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 257, 426, 442
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 6 cut(s) 74, 186, 217, 266, 284, 500
HapII CCGG 3 cut(s) 183, 230, 242
HgaI GACGC 1 cut(s) 476
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 2 cut(s) 53, 298
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 3 cut(s) 362, 374, 485
HpaII CCGG 3 cut(s) 183, 230, 242
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 493, 537, 547
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 100, 482
Hpy8I GTNNAC 3 cut(s) 493, 537, 547
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 214, 230, 247, 272, 281
HpyF3I CTNAG 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 2 cut(s) 53, 298
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 3 cut(s) 360, 371, 578
MflI RGATCY 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 4 cut(s) 22, 146, 166, 178
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 356, 494
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 7 cut(s) 61, 64, 82, 228, 266, 331, 499
Mox20I TGGCCA 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 42, 141
Msp20I TGGCCA 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 3 cut(s) 183, 230, 242
MspR9I CCNGG 2 cut(s) 188, 444
MvaI CCWGG 2 cut(s) 188, 444
MwoI GCNNNNNNNGC 6 cut(s) 197, 214, 230, 247, 272, 281
NaeI GCCGGC 1 cut(s) 231
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 2 cut(s) 53, 298
NlaIV GGNNCC 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 298
PceI AGGCCT 2 cut(s) 217, 284
PciI ACATGT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 356, 493
PpsI GAGTC 2 cut(s) 356, 493
PpuMI RGGWCCY 1 cut(s) 508
PscI ACATGT 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 186, 442
PspGI CCWGG 2 cut(s) 186, 442
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 508
PspPPI RGGWCCY 1 cut(s) 508
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 42, 141
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 2 cut(s) 356, 494
ScrFI CCNGG 2 cut(s) 188, 444
SetI ASST 9 cut(s) 17, 42, 63, 99, 141, 210, 323, 510, 579
SinI GGWCC 1 cut(s) 508
SmlI CTYRAG 3 cut(s) 41, 278, 512
SmoI CTYRAG 3 cut(s) 41, 278, 512
Sse9I AATT 4 cut(s) 22, 146, 166, 178
SseBI AGGCCT 2 cut(s) 217, 284
SsiI CCGC 1 cut(s) 324
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 2 cut(s) 217, 284
StyD4I CCNGG 2 cut(s) 186, 442
StyI CCWWGG 2 cut(s) 267, 501
TaqI TCGA 1 cut(s) 66
TasI AATT 4 cut(s) 22, 146, 166, 178
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 42, 141
Tru9I TTAA 2 cut(s) 42, 141
TscAI CASTG 2 cut(s) 310, 495
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 71, 210, 446
TspRI CASTG 2 cut(s) 310, 495
Tth111I GACNNNGTC 1 cut(s) 95
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 2 cut(s) 146, 178
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.