Rmu_sc0003339.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003339.1
OG0000101
Physical Location & Seq
Reverse (-)
21960 .. 22265
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003339.1_g000004.1.cds

Sequence Viewer

Length: 306 bp
atgatggacagggggatgaggcctaatgctgctacctacactgctgtgatagagagctttgcaaagcaagaggacgaggcatctgaggaggagtgcaaagagttggtggaagtgatggtgggtaaggggtttgtcccaaacacagaggctatgagggaggttctagagggaagcccaacaccattactcgaaagggtcatgaccattaggattaggatgtttcagagatggagttggaaatcatgtaggattctgtgtgaacaggggccgggatttggtgctgttctctattgttgtcagtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

101

Amino Acids

11.5

Weight (kDa)

5.01

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 275
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AoxI GGCC 2 cut(s) 20, 266
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 109, 222
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 21, 222
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 101, 104
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 22, 268
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 22, 268
BspANI GGCC 2 cut(s) 22, 268
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 21, 222
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 22, 268
BtsCI GGATG 2 cut(s) 21, 222
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 305
CciI TCATGA 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 266
CviAII CATG 2 cut(s) 199, 243
CviJI RGCY 5 cut(s) 22, 57, 149, 174, 268
CviKI_1 RGCY 5 cut(s) 22, 57, 149, 174, 268
DdeI CTNAG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 22
FaeI CATG 2 cut(s) 202, 246
FaiI YATR 3 cut(s) 152, 200, 244
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 198, 242
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 28, 229
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 22, 268
HapII CCGG 1 cut(s) 269
Hin1II CATG 2 cut(s) 202, 246
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 85, 225
Hpy188III TCNNGA 2 cut(s) 164, 199
Hpy8I GTNNAC 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 62, 96
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 202, 246
LpnPI CCDG 2 cut(s) 248, 282
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 9 cut(s) 12, 64, 70, 79, 82, 139, 147, 151, 160
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 270
NciI CCSGG 1 cut(s) 270
NlaIII CATG 2 cut(s) 202, 246
NlaIV GGNNCC 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 44
PagI TCATGA 1 cut(s) 198
PceI AGGCCT 1 cut(s) 22
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 44
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 270
SetI ASST 3 cut(s) 38, 59, 162
SfaNI GCATC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 44
SseBI AGGCCT 1 cut(s) 22
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 268
TaqI TCGA 1 cut(s) 189
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 46, 305
TseI GCWGC 1 cut(s) 29
TspRI CASTG 2 cut(s) 46, 305
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.