Rroxscaffold_3G00225300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8540373 .. 8557991
17619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225300.1

Sequence Viewer

Length: 1242 bp
ATGGAGGACAGTACTAGTTCCCCCAATTCTTCCGCCGATGACCTCAAGAAACGTGTCATGAAGGTTTTCAAGGATGCGACCAAAGACTGTGAGGACAAGGTCTTGAAAGAAATGTTTGACTCCATTGGCGACTATGACTCCCTTAACAACTATGCCTTTCATGTCTTCAGAGCATTGGCAAATTCCGGCATCCCTGAGGAAGCCAAAGAGCTCTTTAAGCCTCGCTCTCAGTTGGCTGTACTGCCTGACGTGGCCATCTTCACCATTGTCATTTGGGCCTATGCCAATGCCGGCAAGATCAACGCTGCTCACAAGGTCTACCAGCTAATGATAGCCACCGGTGTCGCCCCCACCTCCTGCACTTATACTATACTCATCACGGCACTTGCAACACACTCATCTTCTGATGTCAATTTTGTTGGGTGTGCCAAGAAGTTCTTTTTGGAAATGTTGGATAGGGGGATGAAGCCCCATTCTGCCTCCTACATGACTGTGTTCGACGCCATTGCCTGCCGGGAGTCGGTGGAGAAGGCCAGGGACTTCCTTGAGCAGATACAAGCAAAGGGGTTCGTCCCTGAGTCCGAAGTTTTTCATTTTGAAGAAACCCACCTCGCAGAAGCAATGAAAAAAATGAAGATGTATGATGATCTCGTCACCAATACCACTGACAAGGATGTGCAAAAAGTATTGCGCACGTTGAACACCAAGCCGGGTTGCCTCTGCAAAAAGTCGTTGAAGATGTACAAGGCTTTGATTGAGGATGGCAATGCAGAACAGGCCTTGGAGCTTTATAAGTGTGATGTCGAGATGGATATGCAGCCCATGGTTGTATTCCACACCTCCGTTATTGAAGCCTATCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCGTACTACGGCATGTTAGCTGCTGGGGTTGCCCCAAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTGCTGACCCCAGCTACTCTGGAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGATGAGGCCTAATGCTGCTACCTACACTGCTGTAATAGAGAGCTTTGCAAAGCAAGAGGACGAGGCATGTGAGGAGGAGTGCAAAGAGCTGGTGGAGGTGATGATGGGTAAGGGGTTTGTGCCAAATGCAAAGGCTATGATGGAGGTTCTAAAGGGAAAACCAAAAGCTGTGATAAGAGGGGTCATGAACATTGTCATTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

413

Amino Acids

45.82

Weight (kDa)

6.07

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 81 - 128 3.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 82 - 130 1.3e-12 PPR repeat family
PPR_2 PF13041 276 - 321 6.7e-10 PPR repeat family
TPR_24 PF23276 279 - 362 9.2e-07 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
Acc16I TGCGCA 1 cut(s) 692
AccI GTMKAC 1 cut(s) 318
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 4 cut(s) 13, 240, 743, 896
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 7 cut(s) 70, 106, 599, 700, 736, 851, 1234
AhlI ACTAGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 533
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 8 cut(s) 211, 325, 787, 911, 978, 1068, 1114, 1193
AluI AGCT 8 cut(s) 211, 325, 787, 911, 978, 1068, 1114, 1193
Alw21I GWGCWC 2 cut(s) 213, 886
AoxI GGCC 5 cut(s) 252, 276, 531, 777, 1031
ApeKI GCWGC 4 cut(s) 305, 817, 911, 1040
ApoI RAATTY 1 cut(s) 181
AsiGI ACCGGT 1 cut(s) 338
Asp700I GAANNNNTTC 2 cut(s) 65, 588
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 2 cut(s) 515, 711
AsuHPI GGTGA 3 cut(s) 253, 646, 1135
AxyI CCTNAGG 1 cut(s) 195
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 2 cut(s) 213, 886
BbvI GCAGC 4 cut(s) 292, 829, 898, 1027
BccI CCATC 6 cut(s) 263, 755, 802, 1009, 1123, 1159
BceAI ACGGC 2 cut(s) 396, 916
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 535
BcnI CCSGG 2 cut(s) 515, 711
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BisI GCNGC 4 cut(s) 306, 818, 912, 1041
BlsI GCNGC 4 cut(s) 307, 819, 913, 1042
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 515, 535, 711
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 276
BmrFI CCNGG 3 cut(s) 515, 535, 711
BmsI GCATC 3 cut(s) 64, 198, 979
BpiI GAAGAC 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 908, 1005
BpuEI CTTGAG 4 cut(s) 29, 566, 845, 1028
BpuMI CCSGG 2 cut(s) 515, 711
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 534, 780, 822, 876
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse118I RCCGGY 2 cut(s) 290, 338
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 3 cut(s) 504, 627, 772
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 4 cut(s) 534, 780, 822, 876
BseGI GGATG 6 cut(s) 79, 189, 468, 679, 766, 1032
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMI GCAATG 3 cut(s) 504, 627, 772
BseMII CTCAG 3 cut(s) 186, 242, 567
BseRI GAGGAG 2 cut(s) 1112, 1115
BseXI GCAGC 4 cut(s) 292, 829, 898, 1027
BseYI CCCAGC 2 cut(s) 914, 974
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 5 cut(s) 254, 278, 533, 779, 1033
BshTI ACCGGT 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 213, 886
BsiSI CCGG 5 cut(s) 186, 291, 339, 514, 710
BslFI GGGAC 3 cut(s) 551, 557, 972
BslI CCNNNNNNNGG 1 cut(s) 520
BsmFI GGGAC 3 cut(s) 551, 557, 972
BsnI GGCC 5 cut(s) 254, 278, 533, 779, 1033
Bsp1286I GDGCHC 2 cut(s) 213, 886
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 2 cut(s) 297, 646
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 1 cut(s) 33
BspANI GGCC 5 cut(s) 254, 278, 533, 779, 1033
BspCNI CTCAG 3 cut(s) 187, 241, 568
BspHI TCATGA 2 cut(s) 57, 1209
BsrDI GCAATG 3 cut(s) 504, 627, 772
BsrFI RCCGGY 2 cut(s) 290, 338
BsrGI TGTACA 1 cut(s) 741
BssAI RCCGGY 2 cut(s) 290, 338
BssECI CCNNGG 4 cut(s) 534, 780, 822, 876
BssMI GATC 2 cut(s) 297, 646
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 3 cut(s) 780, 822, 876
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 4 cut(s) 11, 89, 493, 946
BstACI GRCGYC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 3 cut(s) 292, 511, 1004
BstDEI CTNAG 3 cut(s) 195, 228, 576
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 6 cut(s) 79, 189, 468, 679, 766, 1032
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 2 cut(s) 300, 649
BstMBI GATC 2 cut(s) 297, 646
BstMWI GCNNNNNNNGC 4 cut(s) 217, 776, 890, 920
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 2 cut(s) 907, 1095
BstSCI CCNGG 3 cut(s) 513, 533, 709
BstV1I GCAGC 4 cut(s) 292, 829, 898, 1027
BstV2I GAAGAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 5 cut(s) 254, 278, 533, 779, 1033
BtgI CCRYGG 1 cut(s) 822
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 6 cut(s) 79, 189, 468, 679, 766, 1032
BtsI GCAGTG 2 cut(s) 963, 1050
BtsIMutI CAGTG 4 cut(s) 663, 942, 963, 1050
Cac8I GCNNGC 3 cut(s) 292, 511, 1004
CciI TCATGA 2 cut(s) 57, 1209
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 2 cut(s) 290, 338
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 509
Csp6I GTAC 4 cut(s) 12, 239, 742, 895
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 7 cut(s) 58, 161, 487, 823, 904, 1092, 1210
CviQI GTAC 4 cut(s) 12, 239, 742, 895
DdeI CTNAG 3 cut(s) 195, 228, 576
DpnI GATC 2 cut(s) 299, 648
DpnII GATC 2 cut(s) 297, 646
EaeI YGGCCR 1 cut(s) 252
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 3 cut(s) 780, 822, 876
Eco147I AGGCCT 2 cut(s) 779, 1033
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 3 cut(s) 780, 822, 876
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 3 cut(s) 780, 822, 876
FaeI CATG 7 cut(s) 61, 164, 490, 826, 907, 1095, 1213
FalI AAGNNNNNCTT 4 cut(s) 422, 454, 986, 1018
FaqI GGGAC 3 cut(s) 551, 557, 972
FatI CATG 7 cut(s) 57, 160, 486, 822, 903, 1091, 1209
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 306, 818, 912, 1041
FokI GGATG 6 cut(s) 86, 176, 475, 686, 773, 1039
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 4 cut(s) 306, 818, 912, 1041
FspBI CTAG 1 cut(s) 15
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 1 cut(s) 692
GluI GCNGC 4 cut(s) 306, 818, 912, 1041
GsaI CCCAGC 2 cut(s) 918, 978
GsuI CTGGAG 2 cut(s) 908, 1005
HaeIII GGCC 5 cut(s) 254, 278, 533, 779, 1033
HapII CCGG 5 cut(s) 186, 291, 339, 514, 710
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 693
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 7 cut(s) 61, 164, 490, 826, 907, 1095, 1213
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 5 cut(s) 119, 137, 518, 578, 960
HpaII CCGG 5 cut(s) 186, 291, 339, 514, 710
HphI GGTGA 3 cut(s) 253, 646, 1135
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 170, 406, 583
Hpy188III TCNNGA 7 cut(s) 46, 58, 103, 805, 887, 984, 1210
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 55, 523, 1228
HpyCH4III ACNGT 4 cut(s) 11, 89, 493, 946
HpyCH4IV ACGT 3 cut(s) 52, 249, 695
HpyCH4V TGCA 9 cut(s) 360, 389, 679, 723, 770, 817, 1073, 1107, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 776, 890, 920
HpyF3I CTNAG 3 cut(s) 195, 228, 576
HpySE526I ACGT 3 cut(s) 52, 249, 695
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 7 cut(s) 61, 164, 490, 826, 907, 1095, 1213
HspAI GCGC 1 cut(s) 691
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 297, 646
LmnI GCTCC 1 cut(s) 784
Lsp1109I GCAGC 4 cut(s) 292, 829, 898, 1027
LweI GCATC 3 cut(s) 64, 198, 979
MaeI CTAG 1 cut(s) 15
MaeII ACGT 3 cut(s) 52, 249, 695
MaeIII GTNAC 1 cut(s) 652
MalI GATC 2 cut(s) 299, 648
MboI GATC 2 cut(s) 297, 646
MboII GAAGA 7 cut(s) 21, 157, 250, 393, 611, 646, 748
MhlI GDGCHC 2 cut(s) 213, 886
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 25, 181, 412
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 5 cut(s) 113, 131, 527, 587, 954
MmeI TCCRAC 1 cut(s) 432
Mox20I TGGCCA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 290
MroXI GAANNNNTTC 2 cut(s) 65, 588
MscI TGGCCA 1 cut(s) 254
MseI TTAA 3 cut(s) 144, 216, 950
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 5 cut(s) 186, 291, 339, 514, 710
MspR9I CCNGG 3 cut(s) 515, 535, 711
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 4 cut(s) 217, 776, 890, 920
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 515, 711
NcoI CCATGG 1 cut(s) 822
NdeII GATC 2 cut(s) 297, 646
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 7 cut(s) 61, 164, 490, 826, 907, 1095, 1213
NmuCI GTSAC 1 cut(s) 652
NsbI TGCGCA 1 cut(s) 692
NspI RCATGY 2 cut(s) 907, 1095
PagI TCATGA 2 cut(s) 57, 1209
PceI AGGCCT 2 cut(s) 779, 1033
PdiI GCCGGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 65, 588
PflFI GACNNNGTC 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 4 cut(s) 307, 819, 913, 1042
PleI GAGTC 5 cut(s) 113, 131, 526, 586, 954
PpsI GAGTC 5 cut(s) 113, 131, 526, 586, 954
PsiI TTATAA 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 533
PspFI CCCAGC 2 cut(s) 914, 974
PspGI CCWGG 1 cut(s) 533
PspPI GGNCC 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 4 cut(s) 13, 240, 743, 896
RsaNI GTAC 4 cut(s) 12, 239, 742, 895
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 3 cut(s) 144, 216, 950
SatI GCNGC 4 cut(s) 306, 818, 912, 1041
Sau3AI GATC 2 cut(s) 297, 646
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 5 cut(s) 113, 131, 527, 587, 954
ScrFI CCNGG 3 cut(s) 515, 535, 711
SduI GDGCHC 2 cut(s) 213, 886
SfaNI GCATC 3 cut(s) 64, 198, 979
SgrAI CRCCGGYG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 4 cut(s) 44, 545, 860, 1007
SmoI CTYRAG 4 cut(s) 44, 545, 860, 1007
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 3 cut(s) 25, 181, 412
SseBI AGGCCT 2 cut(s) 779, 1033
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 2 cut(s) 779, 1033
StyD4I CCNGG 3 cut(s) 513, 533, 709
StyI CCWWGG 3 cut(s) 780, 822, 876
TaaI ACNGT 4 cut(s) 11, 89, 493, 946
TaiI ACGT 3 cut(s) 55, 252, 698
TaqI TCGA 2 cut(s) 498, 804
TasI AATT 3 cut(s) 25, 181, 412
TatI WGTACW 3 cut(s) 11, 238, 741
Tru1I TTAA 3 cut(s) 144, 216, 950
Tru9I TTAA 3 cut(s) 144, 216, 950
TscAI CASTG 4 cut(s) 670, 949, 970, 1057
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 4 cut(s) 305, 817, 911, 1040
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 7 cut(s) 74, 149, 479, 581, 638, 647, 1226
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 4 cut(s) 670, 949, 970, 1057
Tth111I GACNNNGTC 1 cut(s) 98
XapI RAATTY 1 cut(s) 181
XceI RCATGY 2 cut(s) 907, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 65, 588
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.