Rmu_co8217500.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8217500.1
OG0000101
Physical Location & Seq
Forward (+)
98 .. 735
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8217500.1_g000001.1.cds

Sequence Viewer

Length: 638 bp
atggccgcggacgacgctgaattgaaatccaccactctcctccccgatgacctggagcggccgccggaggacttgcaagaagtactcggaaagatgtttactgaagaagctctgaccagcaatacaatcaagatggtggagggtttgttgagggatggctttatgaacatgggattggagattggggccaaggttcaggagaccaatgaggtgcccagggttgtcaccgacactgcggtcatggagcactacatcaatgccaccggagacaggaccaaggatgctctcagagtgttcaagcacatgttggtttcaggggtggaaccgaatgcctacacatatgccgtcatcatcaaggcccttgctgctgctgacctaaagaagaaccccaatttcattgtttatgccaagaattattttgtggagatgttggacaggggaatgcagccgaatgaggagacttatgaggcagtgttggaaggcattggccacactgagaataaggccgaggctgaggaggtgcgcagggagtttgtggagaatgtgaaagcaaaggggtttgtgctggtgctccagaaggaggccgaggagagggctaatcctccatcattgaagtccgagatggatgtgcttaagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

212

Amino Acids

23.74

Weight (kDa)

4.74

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 58
AccII CGCG 1 cut(s) 8
AciI CCGC 5 cut(s) 6, 8, 58, 62, 236
AcoI YGGCCR 3 cut(s) 3, 59, 487
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 3 cut(s) 270, 580, 591
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 25, 298, 613
AjnI CCWGG 2 cut(s) 51, 215
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 2 cut(s) 249, 573
Alw26I GTCTC 3 cut(s) 194, 261, 452
AoxI GGCC 7 cut(s) 3, 59, 186, 357, 487, 504, 582
ApeKI GCWGC 3 cut(s) 365, 368, 445
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 3 cut(s) 186, 273, 358
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 249, 573
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 352, 355, 457
BccI CCATC 4 cut(s) 127, 149, 613, 616
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 53, 217
BcoDI GTCTC 3 cut(s) 194, 261, 452
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 6 cut(s) 6, 59, 62, 366, 369, 446
BlsI GCNGC 6 cut(s) 7, 60, 63, 367, 370, 447
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 2 cut(s) 53, 217
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 186, 273, 358
BmiI GGNNCC 3 cut(s) 187, 213, 324
BmrFI CCNGG 2 cut(s) 53, 217
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 2 cut(s) 74, 557
Bpu10I CCTNAGC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 7 cut(s) 6, 189, 215, 216, 276, 507, 585
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 580, 591
BseBI CCWGG 2 cut(s) 53, 217
BseDI CCNNGG 7 cut(s) 6, 189, 215, 216, 276, 507, 585
BseGI GGATG 3 cut(s) 160, 286, 631
BseLI CCNNNNNNNGG 3 cut(s) 270, 580, 591
BseMII CTCAG 3 cut(s) 301, 486, 504
BseRI GAGGAG 4 cut(s) 29, 470, 530, 602
BseSI GKGCMC 1 cut(s) 216
BseX3I CGGCCG 1 cut(s) 59
BseXI GCAGC 3 cut(s) 352, 355, 457
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 7 cut(s) 5, 61, 188, 359, 489, 506, 584
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 249, 573
BsiSI CCGG 2 cut(s) 65, 264
BslI CCNNNNNNNGG 3 cut(s) 270, 580, 591
BsmAI GTCTC 3 cut(s) 194, 261, 452
BsmI GAATGC 2 cut(s) 334, 447
BsnI GGCC 7 cut(s) 5, 61, 188, 359, 489, 506, 584
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 216, 249, 573
BspACI CCGC 5 cut(s) 6, 8, 58, 62, 236
BspANI GGCC 7 cut(s) 5, 61, 188, 359, 489, 506, 584
BspCNI CTCAG 3 cut(s) 300, 487, 505
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 3 cut(s) 187, 213, 324
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 58
BssECI CCNNGG 7 cut(s) 6, 189, 215, 216, 276, 507, 585
BssT1I CCWWGG 2 cut(s) 189, 276
Bst2UI CCWGG 2 cut(s) 53, 217
BstAFI CTTAAG 1 cut(s) 632
BstDEI CTNAG 3 cut(s) 287, 495, 513
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 160, 286, 631
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 525
BstMAI GTCTC 3 cut(s) 194, 261, 452
BstMCI CGRYCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 2 cut(s) 14, 365
BstNI CCWGG 2 cut(s) 53, 217
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 51, 215
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 352, 355, 457
BstZI CGGCCG 1 cut(s) 59
BsuRI GGCC 7 cut(s) 5, 61, 188, 359, 489, 506, 584
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 160, 286, 631
BtsI GCAGTG 2 cut(s) 231, 477
BtsIMutI CAGTG 3 cut(s) 231, 477, 492
CciNI GCGGCCGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 3 cut(s) 186, 273, 358
Cfr42I CCGCGG 1 cut(s) 9
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 83
CviAII CATG 3 cut(s) 169, 241, 304
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 3 cut(s) 287, 495, 513
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 3 cut(s) 3, 59, 487
EagI CGGCCG 1 cut(s) 59
EclXI CGGCCG 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 189, 276
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 51, 215
EcoT14I CCWWGG 2 cut(s) 189, 276
ErhI CCWWGG 2 cut(s) 189, 276
FaeI CATG 3 cut(s) 172, 244, 307
FaiI YATR 8 cut(s) 164, 170, 242, 305, 340, 342, 405, 465
FatI CATG 3 cut(s) 168, 240, 303
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 6 cut(s) 6, 59, 62, 366, 369, 446
FokI GGATG 2 cut(s) 167, 293
Fsp4HI GCNGC 6 cut(s) 6, 59, 62, 366, 369, 446
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 1 cut(s) 524
GluI GCNGC 6 cut(s) 6, 59, 62, 366, 369, 446
GsuI CTGGAG 2 cut(s) 74, 557
HaeIII GGCC 7 cut(s) 5, 61, 188, 359, 489, 506, 584
HapII CCGG 2 cut(s) 65, 264
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 525
Hin1II CATG 3 cut(s) 172, 244, 307
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HpaII CCGG 2 cut(s) 65, 264
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 4 cut(s) 89, 114, 290, 619
Hpy188III TCNNGA 3 cut(s) 130, 197, 574
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 473, 571
HpyCH4V TGCA 2 cut(s) 76, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 365
HpyF3I CTNAG 3 cut(s) 287, 495, 513
Hsp92II CATG 3 cut(s) 172, 244, 307
HspAI GCGC 1 cut(s) 523
KspI CCGCGG 1 cut(s) 9
LmnI GCTCC 3 cut(s) 55, 244, 576
Lsp1109I GCAGC 3 cut(s) 352, 355, 457
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 223
MbiI CCGCTC 1 cut(s) 58
MboII GAAGA 2 cut(s) 116, 394
MhlI GDGCHC 3 cut(s) 216, 249, 573
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 3 cut(s) 20, 391, 412
MluNI TGGCCA 1 cut(s) 489
MmeI TCCRAC 2 cut(s) 411, 456
Mox20I TGGCCA 1 cut(s) 489
MscI TGGCCA 1 cut(s) 489
MseI TTAA 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 8
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 65, 264
MspR9I CCNGG 2 cut(s) 53, 217
Mva1269I GAATGC 2 cut(s) 334, 447
MvaI CCWGG 2 cut(s) 53, 217
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 14, 365
NdeI CATATG 1 cut(s) 340
NlaIII CATG 3 cut(s) 172, 244, 307
NlaIV GGNNCC 3 cut(s) 187, 213, 324
NmeAIII GCCGAG 2 cut(s) 532, 610
NmuCI GTSAC 1 cut(s) 223
NotI GCGGCCGC 1 cut(s) 59
NsbI TGCGCA 1 cut(s) 524
NspI RCATGY 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 216
PciI ACATGT 1 cut(s) 303
PctI GAATGC 2 cut(s) 334, 447
PkrI GCNGC 6 cut(s) 7, 60, 63, 367, 370, 447
PscI ACATGT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 51, 215
PspGI CCWGG 2 cut(s) 51, 215
PspN4I GGNNCC 3 cut(s) 187, 213, 324
PspPI GGNCC 3 cut(s) 186, 273, 358
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SacII CCGCGG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 6 cut(s) 6, 59, 62, 366, 369, 446
Sau96I GGNCC 3 cut(s) 186, 273, 358
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 53, 217
SduI GDGCHC 3 cut(s) 216, 249, 573
SetI ASST 6 cut(s) 54, 112, 195, 213, 378, 522
SfaNI GCATC 1 cut(s) 271
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SinI GGWCC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 3 cut(s) 20, 391, 412
SsiI CCGC 5 cut(s) 6, 8, 58, 62, 236
StyD4I CCNGG 2 cut(s) 51, 215
StyI CCWWGG 2 cut(s) 189, 276
TasI AATT 3 cut(s) 20, 391, 412
TatI WGTACW 1 cut(s) 82
TauI GCSGC 3 cut(s) 8, 61, 64
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 3 cut(s) 238, 477, 499
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 365, 368, 445
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 179, 385
TspRI CASTG 3 cut(s) 238, 477, 499
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 273
XceI RCATGY 1 cut(s) 307
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.