Rorug07G0293100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Forward (+)
28629187 .. 28633796
4610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0293100.1

Sequence Viewer

Length: 1752 bp
ATGGACATCCGCCGTCGGCCCCCCAAAAGGCCTCGTCCGACGGCCGTTAATGGTGGGACCCACTCGCACCAGCACCGTCGAAATGAGAAAGCATCTACCTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCCGGAGGCGGCCCGAAAGCGTCCGACGCGCTGCCGCTGCCACTGTATTTGACGAACGCCGTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTACCTCCTCCACCGCTGGCGCGACAAGATCCGAACGTCCACGCCGCTCCACGTAGTCAACCTCTCCGAACTCGCCGCCATTGTTACCCTCATCGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAGTCCTTCATCTCACGCGCCTCCCACTACGACGACGACATCGAAGAAGAAGATGACGTCCTCTTCGATTCCCGCTGCTGCCCTCCCCCGGCCAAATCCAAATTCGCCGACGCCGACCCCGACCCCGCATTGTGCTCCGAGGAGGACGAGGACATCATCCAGGCCGTTGTAAACGGCGCCGTTCTGCCCTACTCTCTCGAATCGAAGCTCGGGGACTGCAAGAGAGCGGCGGCGATTCGGCGCGAGTGGCTTCAGAGAACGACCGGGAGGTCACTGCAGGGTTTGCCTCTCGAAGGATTCGATTACGACTCCATTCTCGGGCAGTGCTGCGAGTCGCCGGTCGGATACGTGCAGATTCCTGTGGGAATTGCCGGGCCGTTGTTGCTGGACGGGTTTGAATACATGGTGCCAATGGCGACGACGGAGGGGTGCTTGGTGGCGAGCATGAACAGAGGTTGCAAGGCCATTCGCCTCTCCGGTGGGGCCGACTCCCAGGTGTATAGGGACGGCATGACCAGAGCGCCGGTGGTCAAGTTTGGCTCTGCCGTTAGAGCTTGCGAGCTCTTCTACTACTTGGAGAACCGTGTCAATTTCGATACTCTCGCCGTCGTTTTCAATAGATCAAGTCGATTTGCGAGGCTACAAAGCATATTTCCTTCGCTTTCCGGGATGACGCTGCACATAAGATTTAACTGCAGCACAGGTGATGCCATGGGGATGAACATGGTCTCCAAAGGGGTTCAGAATGTTCTTGATTATCTGCAAAACGACTTTCCTGATATGGAGGTTATCGGCATATCTGGAAATTTTTGTTCGGACAAGAAAGCTGCTGCTGTAAACTGGATTCTAGGCCGTGGCAAATCAGTTGTTTGCGAGTCAGTAATCAAGGAAGAGGTGGTCAAAGAAGTGTTGAAAACGAGCGTGTCTAAGCTGGTACAACTCCATCTGAACAAGAACTTTGTAGGTTCTGCTGTGGCCGGATCTGTTGGTGGGTATAATGCCCATGCCAGCAACATCGTATCTGCGATCTTTATAGCCACCGGCCAAGATCCTGCACAGAATGTTGAGAGTTCACACTGTCTAACGAATATTGTATCCATCAATGACGGGAGGGACATTCATGCTTCTGTCACAATGCCTTGCATTGAGGTGGGTACAGTTGGAGGTGGGACTCAACTTGCATCTCAATCTGCTTGCTTAAATATGCTTGGTGTAAAAGGTGCAAGCCAAGGATCACCTGGATCAAACTCAAGGCGGTTGGCCACCATTATAGCCGGTTCAGTACTAGCCGGAGAACTCAGCCTCCTGTCTGCCACGGCAGCTGGTGATGTTGTCAAGAGTCACATGAAATACAACAGATCCAGCAAAGATATATCCAATGCTGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

583

Amino Acids

62.56

Weight (kDa)

6.86

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG-CoA_red PF00368 197 - 573 2.9e-138 Hydroxymethylglutaryl-coenzyme A reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 628
AatII GACGTC 1 cut(s) 420
AccB1I GGYRCC 2 cut(s) 536, 766
AccBSI CCGCTC 2 cut(s) 268, 587
AccII CGCG 4 cut(s) 158, 243, 378, 603
AccIII TCCGGA 1 cut(s) 131
AclWI GGATC 6 cut(s) 244, 1348, 1403, 1600, 1609, 1713
AcoI YGGCCR 5 cut(s) 42, 450, 1335, 1402, 1620
AcsI RAATTY 2 cut(s) 461, 1165
AcuI CTGAAG 1 cut(s) 596
AcyI GRCGYC 3 cut(s) 417, 471, 537
AfaI GTAC 3 cut(s) 1296, 1516, 1644
AfiI CCNNNNNNNGG 4 cut(s) 27, 448, 653, 678
AgsI TTSAA 3 cut(s) 758, 976, 1273
AjnI CCWGG 3 cut(s) 519, 852, 1597
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AloI GAACNNNNNNTCC 4 cut(s) 1073, 1105, 1647, 1679
AluBI AGCT 6 cut(s) 568, 914, 922, 1187, 1291, 1682
AluI AGCT 6 cut(s) 568, 914, 922, 1187, 1291, 1682
Alw21I GWGCWC 2 cut(s) 497, 924
Alw26I GTCTC 1 cut(s) 1093
AlwI GGATC 6 cut(s) 244, 1348, 1403, 1600, 1609, 1713
Ama87I CYCGRG 2 cut(s) 569, 677
Aor13HI TCCGGA 1 cut(s) 131
ApoI RAATTY 2 cut(s) 461, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 6 cut(s) 160, 243, 380, 539, 603, 883
AspS9I GGNCC 5 cut(s) 18, 57, 140, 734, 843
AsuC2I CCSGG 4 cut(s) 449, 625, 733, 1027
AsuHPI GGTGA 3 cut(s) 1076, 1587, 1697
AvaI CYCGRG 2 cut(s) 569, 677
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 1622
BanI GGYRCC 2 cut(s) 536, 766
BanII GRGCYC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 497, 924
BccI CCATC 2 cut(s) 1311, 1466
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 3 cut(s) 521, 854, 1599
BciVI GTATCC 2 cut(s) 698, 1465
BcnI CCSGG 4 cut(s) 449, 625, 733, 1027
BcoDI GTCTC 1 cut(s) 1093
BfaI CTAG 2 cut(s) 1208, 1646
BfmI CTRYAG 2 cut(s) 635, 1054
BfoI RGCGCY 2 cut(s) 540, 884
BfuI GTATCC 2 cut(s) 698, 1465
BmcAI AGTACT 1 cut(s) 1644
Bme1390I CCNGG 7 cut(s) 449, 521, 625, 733, 854, 1027, 1599
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 2 cut(s) 569, 677
BmgT120I GGNCC 5 cut(s) 18, 57, 140, 734, 843
BmiI GGNNCC 6 cut(s) 20, 58, 59, 538, 768, 844
BmrFI CCNGG 7 cut(s) 449, 521, 625, 733, 854, 1027, 1599
BmsI GCATC 4 cut(s) 101, 357, 1057, 1550
BpiI GAAGAC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 1594
BpuMI CCSGG 4 cut(s) 449, 625, 733, 1027
BsaAI YACGTR 2 cut(s) 274, 709
BsaHI GRCGYC 3 cut(s) 417, 471, 537
BsaI GGTCTC 1 cut(s) 1093
BsaJI CCNNGG 8 cut(s) 334, 447, 498, 852, 1071, 1213, 1588, 1674
BsaWI WCCGGW 2 cut(s) 131, 836
BsaXI ACNNNNNCTCC 4 cut(s) 1073, 1103, 1647, 1677
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 448, 653, 678
Bse118I RCCGGY 4 cut(s) 697, 883, 1400, 1634
Bse1I ACTGG 2 cut(s) 361, 1205
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 3 cut(s) 521, 854, 1599
BseDI CCNNGG 8 cut(s) 334, 447, 498, 852, 1071, 1213, 1588, 1674
BseGI GGATG 5 cut(s) 6, 128, 516, 1035, 1083
BseLI CCNNNNNNNGG 4 cut(s) 27, 448, 653, 678
BseMII CTCAG 1 cut(s) 1672
BseNI ACTGG 2 cut(s) 361, 1205
BseRI GAGGAG 3 cut(s) 218, 323, 515
BseX3I CGGCCG 1 cut(s) 42
BsgI GTGCAG 3 cut(s) 731, 1022, 1398
Bsh1236I CGCG 4 cut(s) 158, 243, 378, 603
Bsh1285I CGRYCG 3 cut(s) 45, 624, 702
BshNI GGYRCC 2 cut(s) 536, 766
BsiEI CGRYCG 3 cut(s) 45, 624, 702
BsiHKAI GWGCWC 2 cut(s) 497, 924
BsiHKCI CYCGRG 2 cut(s) 569, 677
BslFI GGGAC 5 cut(s) 70, 587, 878, 1487, 1543
BslI CCNNNNNNNGG 4 cut(s) 27, 448, 653, 678
BsmAI GTCTC 1 cut(s) 1093
BsmFI GGGAC 5 cut(s) 70, 587, 878, 1487, 1543
Bso31I GGTCTC 1 cut(s) 1093
BsoBI CYCGRG 2 cut(s) 569, 677
Bsp1286I GDGCHC 2 cut(s) 497, 924
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
Bsp19I CCATGG 1 cut(s) 1071
BspCNI CTCAG 1 cut(s) 1671
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 4 cut(s) 158, 243, 378, 603
BspLI GGNNCC 6 cut(s) 20, 58, 59, 538, 768, 844
BspMAI CTGCAG 2 cut(s) 639, 1058
BspPI GGATC 6 cut(s) 244, 1348, 1403, 1600, 1609, 1713
BspQI GCTCTTC 1 cut(s) 929
BspT107I GGYRCC 2 cut(s) 536, 766
BspTNI GGTCTC 1 cut(s) 1093
BsrBI CCGCTC 2 cut(s) 268, 587
BsrFI RCCGGY 4 cut(s) 697, 883, 1400, 1634
BsrI ACTGG 2 cut(s) 361, 1205
BssAI RCCGGY 4 cut(s) 697, 883, 1400, 1634
BssECI CCNNGG 8 cut(s) 334, 447, 498, 852, 1071, 1213, 1588, 1674
BssMI GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
BssNI GRCGYC 3 cut(s) 417, 471, 537
BssT1I CCWWGG 2 cut(s) 1071, 1588
Bst2UI CCWGG 3 cut(s) 521, 854, 1599
Bst4CI ACNGT 5 cut(s) 77, 174, 944, 1439, 1519
Bst6I CTCTTC 5 cut(s) 106, 209, 428, 929, 1245
BstACI GRCGYC 3 cut(s) 417, 471, 537
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 2 cut(s) 274, 709
BstC8I GCNNGC 7 cut(s) 239, 802, 916, 920, 1369, 1555, 1585
BstDEI CTNAG 2 cut(s) 1287, 1658
BstDSI CCRYGG 3 cut(s) 1071, 1213, 1674
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 5 cut(s) 6, 128, 516, 1035, 1083
BstFNI CGCG 4 cut(s) 158, 243, 378, 603
BstH2I RGCGCY 2 cut(s) 540, 884
BstHHI GCGC 6 cut(s) 160, 243, 380, 539, 603, 883
BstKTI GATC 8 cut(s) 252, 983, 1343, 1389, 1411, 1595, 1604, 1721
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
BstMCI CGRYCG 3 cut(s) 45, 624, 702
BstMWI GCNNNNNNNGC 8 cut(s) 155, 166, 345, 607, 643, 742, 911, 1679
BstNI CCWGG 3 cut(s) 521, 854, 1599
BstSCI CCNGG 7 cut(s) 447, 519, 623, 731, 852, 1025, 1597
BstSFI CTRYAG 2 cut(s) 635, 1054
BstUI CGCG 4 cut(s) 158, 243, 378, 603
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 4 cut(s) 249, 1340, 1408, 1718
BstYI RGATCY 4 cut(s) 249, 1340, 1408, 1718
BstZI CGGCCG 1 cut(s) 42
BsuI GTATCC 2 cut(s) 698, 1465
BtgI CCRYGG 3 cut(s) 1071, 1213, 1674
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 5 cut(s) 6, 128, 516, 1035, 1083
BtsI GCAGTG 2 cut(s) 632, 689
BtsIMutI CAGTG 4 cut(s) 170, 632, 689, 1435
Cac8I GCNNGC 7 cut(s) 239, 802, 916, 920, 1369, 1555, 1585
CfoI GCGC 6 cut(s) 160, 243, 380, 539, 603, 883
Cfr10I RCCGGY 4 cut(s) 697, 883, 1400, 1634
Cfr13I GGNCC 5 cut(s) 18, 57, 140, 734, 843
CseI GACGC 4 cut(s) 138, 164, 479, 1042
Csp6I GTAC 3 cut(s) 1295, 1515, 1643
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 8 cut(s) 763, 805, 871, 1072, 1084, 1364, 1481, 1705
CviQI GTAC 3 cut(s) 1295, 1515, 1643
DdeI CTNAG 2 cut(s) 1287, 1658
DinI GGCGCC 1 cut(s) 538
DpnI GATC 8 cut(s) 251, 982, 1342, 1388, 1410, 1594, 1603, 1720
DpnII GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
DrdI GACNNNNNNGTC 1 cut(s) 628
DseDI GACNNNNNNGTC 1 cut(s) 628
EaeI YGGCCR 5 cut(s) 42, 450, 1335, 1402, 1620
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 5 cut(s) 106, 209, 428, 929, 1245
EarI CTCTTC 5 cut(s) 106, 209, 428, 929, 1245
Ecl136II GAGCTC 1 cut(s) 922
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 1071, 1588
Eco147I AGGCCT 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 1093
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 596
Eco88I CYCGRG 2 cut(s) 569, 677
EcoICRI GAGCTC 1 cut(s) 922
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 3 cut(s) 519, 852, 1597
EcoT14I CCWWGG 2 cut(s) 1071, 1588
EcoT38I GRGCYC 1 cut(s) 924
EgeI GGCGCC 1 cut(s) 538
EheI GGCGCC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 1071, 1588
FaeI CATG 8 cut(s) 766, 808, 874, 1075, 1087, 1367, 1484, 1708
FaqI GGGAC 5 cut(s) 70, 587, 878, 1487, 1543
FatI CATG 8 cut(s) 762, 804, 870, 1071, 1083, 1363, 1480, 1704
FauI CCCGC 2 cut(s) 440, 493
FokI GGATG 4 cut(s) 115, 503, 1042, 1090
FriOI GRGCYC 1 cut(s) 924
FspBI CTAG 2 cut(s) 1208, 1646
GlaI GCGC 6 cut(s) 159, 242, 379, 538, 602, 882
HaeII RGCGCY 2 cut(s) 540, 884
HgaI GACGC 4 cut(s) 138, 164, 479, 1042
HhaI GCGC 6 cut(s) 160, 243, 380, 539, 603, 883
Hin1I GRCGYC 3 cut(s) 417, 471, 537
Hin1II CATG 8 cut(s) 766, 808, 874, 1075, 1087, 1367, 1484, 1708
Hin6I GCGC 6 cut(s) 158, 241, 378, 537, 601, 881
HinP1I GCGC 6 cut(s) 158, 241, 378, 537, 601, 881
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HphI GGTGA 3 cut(s) 1076, 1587, 1697
Hpy166II GTNNAC 5 cut(s) 261, 280, 532, 1198, 1433
Hpy188III TCNNGA 8 cut(s) 132, 557, 650, 1112, 1136, 1161, 1696, 1749
Hpy8I GTNNAC 5 cut(s) 261, 280, 532, 1198, 1433
HpyAV CCTTC 4 cut(s) 331, 376, 647, 1026
HpyCH4III ACNGT 5 cut(s) 77, 174, 944, 1439, 1519
HpyCH4IV ACGT 4 cut(s) 257, 273, 417, 708
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 166, 345, 607, 643, 742, 911, 1679
HpyF3I CTNAG 2 cut(s) 1287, 1658
HpySE526I ACGT 4 cut(s) 257, 273, 417, 708
Hsp92I GRCGYC 3 cut(s) 417, 471, 537
Hsp92II CATG 8 cut(s) 766, 808, 874, 1075, 1087, 1367, 1484, 1708
HspAI GCGC 6 cut(s) 158, 241, 378, 537, 601, 881
KasI GGCGCC 1 cut(s) 536
KflI GGGWCCC 1 cut(s) 57
Kpn2I TCCGGA 1 cut(s) 131
Kzo9I GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
LguI GCTCTTC 1 cut(s) 929
LmnI GCTCC 2 cut(s) 273, 500
LweI GCATC 4 cut(s) 101, 357, 1057, 1550
MaeI CTAG 2 cut(s) 1208, 1646
MaeII ACGT 4 cut(s) 257, 273, 417, 708
MaeIII GTNAC 4 cut(s) 304, 630, 1489, 1700
MalI GATC 8 cut(s) 251, 982, 1342, 1388, 1410, 1594, 1603, 1720
MbiI CCGCTC 2 cut(s) 268, 587
MboI GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
MflI RGATCY 4 cut(s) 249, 1340, 1408, 1718
MhlI GDGCHC 2 cut(s) 497, 924
MlsI TGGCCA 1 cut(s) 1622
MluCI AATT 4 cut(s) 461, 726, 949, 1165
MluNI TGGCCA 1 cut(s) 1622
Mly113I GGCGCC 1 cut(s) 537
MlyI GAGTC 6 cut(s) 662, 701, 842, 1244, 1525, 1708
MmeI TCCRAC 4 cut(s) 62, 177, 682, 1501
Mox20I TGGCCA 1 cut(s) 1622
MroI TCCGGA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 1622
MseI TTAA 3 cut(s) 48, 1050, 1559
MslI CAYNNNNRTG 2 cut(s) 1076, 1508
Msp20I TGGCCA 1 cut(s) 1622
MspA1I CMGCKG 4 cut(s) 166, 237, 435, 1682
MspR9I CCNGG 7 cut(s) 449, 521, 625, 733, 854, 1027, 1599
MvaI CCWGG 3 cut(s) 521, 854, 1599
MvnI CGCG 4 cut(s) 158, 243, 378, 603
MwoI GCNNNNNNNGC 8 cut(s) 155, 166, 345, 607, 643, 742, 911, 1679
NarI GGCGCC 1 cut(s) 537
NciI CCSGG 4 cut(s) 449, 625, 733, 1027
NcoI CCATGG 1 cut(s) 1071
NdeII GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
NlaIII CATG 8 cut(s) 766, 808, 874, 1075, 1087, 1367, 1484, 1708
NlaIV GGNNCC 6 cut(s) 20, 58, 59, 538, 768, 844
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 3 cut(s) 630, 1489, 1700
PceI AGGCCT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 929
PcsI WCGNNNNNNNCGW 5 cut(s) 399, 423, 471, 477, 657
PfeI GAWTC 6 cut(s) 428, 560, 595, 657, 715, 1204
PflFI GACNNNGTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 1025
PleI GAGTC 6 cut(s) 662, 700, 842, 1243, 1525, 1707
PluTI GGCGCC 1 cut(s) 540
PpsI GAGTC 6 cut(s) 662, 700, 842, 1243, 1525, 1707
Ppu21I YACGTR 2 cut(s) 274, 709
PpuMI RGGWCCY 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 519, 852, 1597
PspGI CCWGG 3 cut(s) 519, 852, 1597
PspN4I GGNNCC 6 cut(s) 20, 58, 59, 538, 768, 844
PspPI GGNCC 5 cut(s) 18, 57, 140, 734, 843
PspPPI RGGWCCY 1 cut(s) 57
PstI CTGCAG 2 cut(s) 639, 1058
PsuI RGATCY 4 cut(s) 249, 1340, 1408, 1718
PsyI GACNNNGTC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 1682
RsaI GTAC 3 cut(s) 1296, 1516, 1644
RsaNI GTAC 3 cut(s) 1295, 1515, 1643
RseI CAYNNNNRTG 2 cut(s) 1076, 1508
SacI GAGCTC 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 929
SaqAI TTAA 3 cut(s) 48, 1050, 1559
Sau3AI GATC 8 cut(s) 249, 980, 1340, 1386, 1408, 1592, 1601, 1718
Sau96I GGNCC 5 cut(s) 18, 57, 140, 734, 843
ScaI AGTACT 1 cut(s) 1644
SchI GAGTC 6 cut(s) 662, 701, 842, 1244, 1525, 1708
ScrFI CCNGG 7 cut(s) 449, 521, 625, 733, 854, 1027, 1599
SduI GDGCHC 2 cut(s) 497, 924
SfaNI GCATC 4 cut(s) 101, 357, 1057, 1550
SfcI CTRYAG 2 cut(s) 635, 1054
SfoI GGCGCC 1 cut(s) 538
SgrAI CRCCGGYG 1 cut(s) 883
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 1076, 1508
SmlI CTYRAG 1 cut(s) 1609
SmoI CTYRAG 1 cut(s) 1609
Sse9I AATT 4 cut(s) 461, 726, 949, 1165
SseBI AGGCCT 1 cut(s) 31
SspDI GGCGCC 1 cut(s) 536
SspI AATATT 1 cut(s) 1450
SspMI CTAG 2 cut(s) 1208, 1646
SstI GAGCTC 1 cut(s) 924
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 7 cut(s) 447, 519, 623, 731, 852, 1025, 1597
StyI CCWWGG 2 cut(s) 1071, 1588
TaaI ACNGT 5 cut(s) 77, 174, 944, 1439, 1519
TaiI ACGT 4 cut(s) 260, 276, 420, 711
TasI AATT 4 cut(s) 461, 726, 949, 1165
TatI WGTACW 1 cut(s) 1642
TauI GCSGC 6 cut(s) 141, 166, 268, 299, 590, 593
TfiI GAWTC 6 cut(s) 428, 560, 595, 657, 715, 1204
Tru1I TTAA 3 cut(s) 48, 1050, 1559
Tru9I TTAA 3 cut(s) 48, 1050, 1559
TscAI CASTG 4 cut(s) 177, 639, 689, 1442
TseFI GTSAC 3 cut(s) 630, 1489, 1700
Tsp45I GTSAC 3 cut(s) 630, 1489, 1700
TspDTI ATGAA 7 cut(s) 114, 313, 358, 821, 1094, 1469, 1721
TspGWI ACGGA 2 cut(s) 202, 797
TspRI CASTG 4 cut(s) 177, 639, 689, 1442
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 2 cut(s) 461, 1165
XcmI CCANNNNNNNNNTGG 2 cut(s) 883, 1595
XspI CTAG 2 cut(s) 1208, 1646
ZraI GACGTC 1 cut(s) 418
ZrmI AGTACT 1 cut(s) 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.