Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396983.1

Orthogroup ID

OG0010667

Physical Location & Seq

Genomic Coordinates Forward (+)

37 .. 869

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggtgcacagcttccacccctacacggcggcctcggcccgcttccggcaaatctcggtgcccttcaacctgcgcaagacaaagccacggtggtcggagatcttggacccgggatccgaaacagtgacacggtggaactacatcttcttcgtgatctgcatcatgggcctcttcctcgatcccctattcttcttcttacccctcatcggcggaaaagcctgcatggagaccgacctccaaatcagcatctacgtcacctccatccgcacaatcgccgacttgttctacatcttccacattatcatcaagtttcgtattgcctttattgcccctggctctagggttttcggccgcggccagctagttaaggacccctgggccattgcctcgcgctacctcaaaaaggacttctccattgacctagccgcctgtctaccactcccccagattatgatttggtttgtgattccagcgacgagaaactcgacagctgcttatactaatcatacactttccttgatcgttctcattcaatacatcccccgatttattcagcttttccctctaaaccggcggattgctaagaacactggtgttgtggccaagactgcttggtcaggggcagtgtacaatcttattctttttgcgctaactgcacatgtaacgagcctgcatttctctatgcgtcccaatattgcctttgatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

236

Amino Acids

27.0

Weight (kDa)

9.97

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48010
fragaria_vesca	FvH4_5g05660
malus_domestica	MD06G1177300.v1.1 MD14G1183500.v1.1
prunus_persica	Prupe.5G176000_v2.0.a1 Prupe.5G176000_v2.0.a1
pyrus_communis	pycom14g15260
rosa_chinensis	RchiOBHm_Chr7g0193151
rosa_laevigata	RLG00000004292
rosa_multiflora	Rmu_co8354259.1_g000001 Rmu_co8396983.1_g000001 Rmu_ssc0000092.1_g000037
rosa_roxburghii	Rroxscaffold_3G00262340
rosa_rugosa	Rorug07G0008000 Rorug07G0008100
rosa_samantha	Rh7AG133100 Rh7BG134200 Rh7CG137000 Rh7DG135000
rosa_wichuraiana	Rw7G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	613
Acc16I	TGCGCA	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	2 cut(s)	354, 391
AciI	CCGC	8 cut(s)	29, 40, 210, 265, 352, 354, 426, 574
AclWI	GGATC	3 cut(s)	108, 121, 173
AcoI	YGGCCR	3 cut(s)	349, 355, 600
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	25, 45, 206, 403
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	2 cut(s)	67, 533
AjnI	CCWGG	2 cut(s)	331, 374
AluBI	AGCT	4 cut(s)	12, 361, 491, 556
AluI	AGCT	4 cut(s)	12, 361, 491, 556
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	108, 121, 173
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	7 cut(s)	30, 36, 166, 349, 355, 378, 600
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	491
AspLEI	GCGC	3 cut(s)	75, 393, 649
AspS9I	GGNCC	5 cut(s)	37, 106, 166, 370, 378
AsuC2I	CCSGG	2 cut(s)	110, 111
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	106, 370
BaeGI	GKGCMC	2 cut(s)	9, 63
BalI	TGGCCA	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	333, 376
BcnI	CCSGG	2 cut(s)	110, 111
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	339, 362, 422
BfuAI	ACCTGC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	5 cut(s)	30, 352, 355, 426, 492
BlsI	GCNGC	5 cut(s)	31, 353, 356, 427, 493
Bme1390I	CCNGG	4 cut(s)	110, 111, 333, 376
Bme18I	GGWCC	2 cut(s)	106, 370
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	5 cut(s)	37, 106, 166, 370, 378
BmiI	GGNNCC	4 cut(s)	60, 108, 115, 372
BmrFI	CCNGG	4 cut(s)	110, 111, 333, 376
BmsI	GCATC	2 cut(s)	168, 255
BpuMI	CCSGG	2 cut(s)	110, 111
BsaBI	GATNNNNATC	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	7 cut(s)	33, 86, 109, 331, 352, 374, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 45, 206, 403
Bse118I	RCCGGY	1 cut(s)	570
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	333, 376
BseDI	CCNNGG	7 cut(s)	33, 86, 109, 331, 352, 374, 375
BseGI	GGATG	2 cut(s)	261, 537
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	4 cut(s)	25, 45, 206, 403
BseMI	GCAATG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	2 cut(s)	9, 63
BseX3I	CGGCCG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	2 cut(s)	354, 391
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	7 cut(s)	32, 38, 168, 351, 357, 380, 602
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	46, 110, 571
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	4 cut(s)	25, 45, 206, 403
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	672
BsnI	GGCC	7 cut(s)	32, 38, 168, 351, 357, 380, 602
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	9, 63
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	5 cut(s)	99, 113, 153, 178, 519
BspACI	CCGC	8 cut(s)	29, 40, 210, 265, 352, 354, 426, 574
BspANI	GGCC	7 cut(s)	32, 38, 168, 351, 357, 380, 602
BspFNI	CGCG	2 cut(s)	354, 391
BspLI	GGNNCC	4 cut(s)	60, 108, 115, 372
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	108, 121, 173
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	7 cut(s)	33, 86, 109, 331, 352, 374, 375
BssMI	GATC	5 cut(s)	99, 113, 153, 178, 519
Bst2UI	CCWGG	2 cut(s)	333, 376
Bst4CI	ACNGT	3 cut(s)	90, 124, 132
Bst6I	CTCTTC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	4 cut(s)	40, 220, 359, 671
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	2 cut(s)	86, 352
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	261, 537
BstFNI	CGCG	2 cut(s)	354, 391
BstHHI	GCGC	3 cut(s)	75, 393, 649
BstKTI	GATC	5 cut(s)	102, 116, 156, 181, 522
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	99, 113, 153, 178, 519
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 165, 326, 608, 653
BstNI	CCWGG	2 cut(s)	333, 376
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	4 cut(s)	108, 109, 331, 374
BstSLI	GKGCMC	2 cut(s)	9, 63
BstUI	CGCG	2 cut(s)	354, 391
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	99, 113
BstYI	RGATCY	2 cut(s)	99, 113
BstZI	CGGCCG	1 cut(s)	349
BsuRI	GGCC	7 cut(s)	32, 38, 168, 351, 357, 380, 602
BtgI	CCRYGG	2 cut(s)	86, 352
BtsCI	GGATG	2 cut(s)	261, 537
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	129, 588, 630
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	4 cut(s)	40, 220, 359, 671
CfoI	GCGC	3 cut(s)	75, 393, 649
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	5 cut(s)	37, 106, 166, 370, 378
Cfr42I	CCGCGG	1 cut(s)	355
Cfr9I	CCCGGG	1 cut(s)	109
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	3 cut(s)	163, 223, 659
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	5 cut(s)	101, 115, 155, 180, 521
DpnII	GATC	5 cut(s)	99, 113, 153, 178, 519
DrdI	GACNNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	613
EaeI	YGGCCR	3 cut(s)	349, 355, 600
EagI	CGGCCG	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	2 cut(s)	225, 589
EclXI	CGGCCG	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	106, 370
Eco52I	CGGCCG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	331, 374
FaeI	CATG	3 cut(s)	166, 226, 662
FaiI	YATR	7 cut(s)	164, 224, 452, 498, 507, 660, 683
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	3 cut(s)	162, 222, 658
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	30, 352, 355, 426, 492
FokI	GGATG	2 cut(s)	248, 524
Fsp4HI	GCNGC	5 cut(s)	30, 352, 355, 426, 492
FspBI	CTAG	3 cut(s)	339, 362, 422
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	3 cut(s)	74, 392, 648
GluI	GCNGC	5 cut(s)	30, 352, 355, 426, 492
HaeIII	GGCC	7 cut(s)	32, 38, 168, 351, 357, 380, 602
HapII	CCGG	3 cut(s)	46, 110, 571
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	3 cut(s)	75, 393, 649
Hin1II	CATG	3 cut(s)	166, 226, 662
Hin6I	GCGC	3 cut(s)	73, 391, 647
HinP1I	GCGC	3 cut(s)	73, 391, 647
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	3 cut(s)	46, 110, 571
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	7, 434, 628
Hpy188I	TCNGA	2 cut(s)	97, 118
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	3 cut(s)	7, 434, 628
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	90, 124, 132
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	7, 159, 222, 656, 673
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 165, 326, 608, 653
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	166, 226, 662
HspAI	GCGC	3 cut(s)	73, 391, 647
KspI	CCGCGG	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	99, 113, 153, 178, 519
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	168, 255
MaeI	CTAG	3 cut(s)	339, 362, 422
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	124, 253, 661
MalI	GATC	5 cut(s)	101, 115, 155, 180, 521
MboI	GATC	5 cut(s)	99, 113, 153, 178, 519
MboII	GAAGA	6 cut(s)	136, 139, 163, 181, 184, 283
MflI	RGATCY	2 cut(s)	99, 113
MhlI	GDGCHC	2 cut(s)	9, 63
MlsI	TGGCCA	1 cut(s)	602
MluNI	TGGCCA	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	9 cut(s)	43, 179, 185, 212, 245, 268, 397, 407, 573
Mox20I	TGGCCA	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	354, 491
MspI	CCGG	3 cut(s)	46, 110, 571
MspR9I	CCNGG	4 cut(s)	110, 111, 333, 376
MvaI	CCWGG	2 cut(s)	333, 376
MvnI	CGCG	2 cut(s)	354, 391
MwoI	GCNNNNNNNGC	5 cut(s)	35, 165, 326, 608, 653
NciI	CCSGG	2 cut(s)	110, 111
NdeII	GATC	5 cut(s)	99, 113, 153, 178, 519
NlaIII	CATG	3 cut(s)	166, 226, 662
NlaIV	GGNNCC	4 cut(s)	60, 108, 115, 372
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	124, 253
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	662
PasI	CCCWGGG	1 cut(s)	375
PciI	ACATGT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	5 cut(s)	31, 353, 356, 427, 493
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	331, 374
PspGI	CCWGG	2 cut(s)	331, 374
PspN4I	GGNNCC	4 cut(s)	60, 108, 115, 372
PspPI	GGNCC	5 cut(s)	37, 106, 166, 370, 378
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	99, 113
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SacII	CCGCGG	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	5 cut(s)	30, 352, 355, 426, 492
Sau3AI	GATC	5 cut(s)	99, 113, 153, 178, 519
Sau96I	GGNCC	5 cut(s)	37, 106, 166, 370, 378
ScrFI	CCNGG	4 cut(s)	110, 111, 333, 376
SduI	GDGCHC	2 cut(s)	9, 63
SfaNI	GCATC	2 cut(s)	168, 255
Sfr303I	CCGCGG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	106, 370
SmaI	CCCGGG	1 cut(s)	111
SsiI	CCGC	8 cut(s)	29, 40, 210, 265, 352, 354, 426, 574
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	339, 362, 422
StyD4I	CCNGG	4 cut(s)	108, 109, 331, 374
TaaI	ACNGT	3 cut(s)	90, 124, 132
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	177, 485
TaqII	GACCGA	1 cut(s)	245
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	4 cut(s)	32, 354, 357, 428
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	3 cut(s)	129, 595, 630
TseFI	GTSAC	2 cut(s)	124, 253
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	124, 253
TspMI	CCCGGG	1 cut(s)	109
TspRI	CASTG	3 cut(s)	129, 595, 630
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	2 cut(s)	106, 370
XagI	CCTNNNNNAGG	1 cut(s)	401
XceI	RCATGY	1 cut(s)	662
XmaI	CCCGGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	3 cut(s)	339, 362, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.