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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 |
| malus_domestica | MD14G1208500.v1.1 |
| prunus_persica | Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 |
| pyrus_communis | pycom14g17210 |
| rosa_chinensis | RchiOBHm_Chr7g0182421 |
| rosa_laevigata | RLG00000005124 |
| rosa_multiflora | Rmu_sc0034215.1_g000002 Rmu_sc0034215.1_g000003 Rmu_ssc0000376.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271260 |
| rosa_rugosa | Rorug06G0447500 Rorug06G0447600 Rorug06G0447700 |
| rosa_samantha | Rh7AG051000 Rh7BG050500 Rh7CG052100 Rh7DG049800 |
| rosa_wichuraiana | Rw7G004140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2058 |
| Acc36I | ACCTGC | 1 cut(s) | 3241 |
| AccB1I | GGYRCC | 1 cut(s) | 485 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2698 |
| AccI | GTMKAC | 1 cut(s) | 971 |
| AciI | CCGC | 9 cut(s) | 1102, 1337, 2803, 2941, 3193, 3559, 3794, 3960, 4752 |
| AcoI | YGGCCR | 1 cut(s) | 4363 |
| AcvI | CACGTG | 1 cut(s) | 1682 |
| AcyI | GRCGYC | 1 cut(s) | 4920 |
| AdeI | CACNNNGTG | 1 cut(s) | 1013 |
| AflII | CTTAAG | 1 cut(s) | 3676 |
| AflIII | ACRYGT | 1 cut(s) | 751 |
| AgeI | ACCGGT | 1 cut(s) | 4165 |
| AjiI | CACGTC | 1 cut(s) | 4306 |
| AjnI | CCWGG | 4 cut(s) | 2011, 2742, 3639, 4915 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4613, 4645 |
| AleI | CACNNNNGTG | 1 cut(s) | 1250 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1955, 1987, 3534, 3566 |
| Alw21I | GWGCWC | 6 cut(s) | 289, 1681, 2044, 2137, 2173, 4691 |
| Alw26I | GTCTC | 9 cut(s) | 535, 1993, 2073, 2286, 2537, 2701, 3657, 4190, 4796 |
| Alw44I | GTGCAC | 2 cut(s) | 1677, 2040 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 605, 3314, 4199 |
| Ama87I | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| AoxI | GGCC | 7 cut(s) | 1334, 1478, 2622, 2688, 2871, 3635, 4363 |
| ApaLI | GTGCAC | 2 cut(s) | 1677, 2040 |
| AsiGI | ACCGGT | 1 cut(s) | 4165 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 2295, 2439, 2634, 2836, 3816 |
| AspA2I | CCTAGG | 1 cut(s) | 1733 |
| AspLEI | GCGC | 3 cut(s) | 189, 2400, 4674 |
| AspS9I | GGNCC | 8 cut(s) | 147, 994, 1478, 2622, 2689, 2871, 3636, 4911 |
| AsuC2I | CCSGG | 5 cut(s) | 213, 236, 282, 4669, 4797 |
| AsuHPI | GGTGA | 8 cut(s) | 461, 661, 812, 869, 2001, 2336, 2867, 3986 |
| AsuII | TTCGAA | 2 cut(s) | 48, 725 |
| AsuNHI | GCTAGC | 1 cut(s) | 1442 |
| AvaI | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| AvaII | GGWCC | 3 cut(s) | 147, 994, 4911 |
| AvrII | CCTAGG | 1 cut(s) | 1733 |
| AxyI | CCTNAGG | 1 cut(s) | 849 |
| BaeGI | GKGCMC | 5 cut(s) | 1057, 1308, 1681, 1687, 2044 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4488, 4521 |
| BalI | TGGCCA | 1 cut(s) | 4365 |
| BamHI | GGATCC | 1 cut(s) | 1778 |
| BanI | GGYRCC | 1 cut(s) | 485 |
| BanII | GRGCYC | 2 cut(s) | 38, 2173 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4161, 4193 |
| BauI | CACGAG | 2 cut(s) | 1995, 2130 |
| BbrPI | CACGTG | 1 cut(s) | 1682 |
| BbsI | GAAGAC | 3 cut(s) | 1263, 4308, 4899 |
| Bbv12I | GWGCWC | 6 cut(s) | 289, 1681, 2044, 2137, 2173, 4691 |
| BbvCI | CCTCAGC | 1 cut(s) | 3454 |
| BceAI | ACGGC | 4 cut(s) | 3054, 3620, 4591, 4821 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 401, 435, 2984, 3018 |
| BciT130I | CCWGG | 4 cut(s) | 2013, 2744, 3641, 4917 |
| BciVI | GTATCC | 3 cut(s) | 3023, 3418, 3967 |
| BclI | TGATCA | 1 cut(s) | 3150 |
| BcnI | CCSGG | 5 cut(s) | 213, 236, 282, 4669, 4797 |
| BcoDI | GTCTC | 9 cut(s) | 535, 1993, 2073, 2286, 2537, 2701, 3657, 4190, 4796 |
| BfmI | CTRYAG | 4 cut(s) | 89, 375, 3182, 4241 |
| BfrI | CTTAAG | 1 cut(s) | 3676 |
| BfuAI | ACCTGC | 1 cut(s) | 3241 |
| BfuI | GTATCC | 3 cut(s) | 3023, 3418, 3967 |
| BglII | AGATCT | 4 cut(s) | 1237, 2834, 3613, 3710 |
| BlnI | CCTAGG | 1 cut(s) | 1733 |
| BlpI | GCTNAGC | 1 cut(s) | 2664 |
| BmcAI | AGTACT | 2 cut(s) | 721, 4320 |
| Bme1390I | CCNGG | 9 cut(s) | 213, 236, 282, 2013, 2744, 3641, 4669, 4797, 4917 |
| Bme18I | GGWCC | 3 cut(s) | 147, 994, 4911 |
| BmeT110I | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| BmgBI | CACGTC | 1 cut(s) | 4306 |
| BmgT120I | GGNCC | 8 cut(s) | 147, 994, 1478, 2622, 2689, 2871, 3636, 4911 |
| BmiI | GGNNCC | 9 cut(s) | 487, 1479, 1780, 2872, 3174, 3638, 4080, 4912, 4913 |
| BmrFI | CCNGG | 9 cut(s) | 213, 236, 282, 2013, 2744, 3641, 4669, 4797, 4917 |
| BmrI | ACTGGG | 4 cut(s) | 900, 1966, 4209, 4917 |
| BmtI | GCTAGC | 1 cut(s) | 1446 |
| BmuI | ACTGGG | 4 cut(s) | 900, 1966, 4209, 4917 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4232 |
| BpiI | GAAGAC | 3 cut(s) | 1263, 4308, 4899 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1208, 1240 |
| BpmI | CTGGAG | 2 cut(s) | 2765, 4335 |
| Bpu10I | CCTNAGC | 3 cut(s) | 333, 2887, 3454 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2664 |
| Bpu14I | TTCGAA | 2 cut(s) | 48, 725 |
| BpuEI | CTTGAG | 3 cut(s) | 2289, 3593, 4762 |
| BpuMI | CCSGG | 5 cut(s) | 213, 236, 282, 4669, 4797 |
| Bsa29I | ATCGAT | 2 cut(s) | 3473, 4881 |
| BsaAI | YACGTR | 3 cut(s) | 1682, 2045, 2246 |
| BsaBI | GATNNNNATC | 4 cut(s) | 519, 2839, 2862, 4484 |
| BsaHI | GRCGYC | 1 cut(s) | 4920 |
| BsaI | GGTCTC | 2 cut(s) | 535, 3657 |
| BsaWI | WCCGGW | 1 cut(s) | 4165 |
| Bse118I | RCCGGY | 1 cut(s) | 4165 |
| Bse21I | CCTNAGG | 1 cut(s) | 849 |
| Bse3DI | GCAATG | 1 cut(s) | 2920 |
| Bse8I | GATNNNNATC | 4 cut(s) | 519, 2839, 2862, 4484 |
| BseBI | CCWGG | 4 cut(s) | 2013, 2744, 3641, 4917 |
| BseCI | ATCGAT | 2 cut(s) | 3473, 4881 |
| BseJI | GATNNNNATC | 4 cut(s) | 519, 2839, 2862, 4484 |
| BseMI | GCAATG | 1 cut(s) | 2920 |
| BseRI | GAGGAG | 2 cut(s) | 2035, 2440 |
| BseSI | GKGCMC | 5 cut(s) | 1057, 1308, 1681, 1687, 2044 |
| BseYI | CCCAGC | 2 cut(s) | 195, 4407 |
| BsgI | GTGCAG | 3 cut(s) | 2625, 4146, 4176 |
| BshFI | GGCC | 7 cut(s) | 1336, 1480, 2624, 2690, 2873, 3637, 4365 |
| BshNI | GGYRCC | 1 cut(s) | 485 |
| BshTI | ACCGGT | 1 cut(s) | 4165 |
| BshVI | ATCGAT | 2 cut(s) | 3473, 4881 |
| BsiHKAI | GWGCWC | 6 cut(s) | 289, 1681, 2044, 2137, 2173, 4691 |
| BsiHKCI | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| BsiSI | CCGG | 7 cut(s) | 212, 235, 281, 3097, 4166, 4668, 4797 |
| BslFI | GGGAC | 4 cut(s) | 194, 248, 4779, 4924 |
| BsmAI | GTCTC | 9 cut(s) | 535, 1993, 2073, 2286, 2537, 2701, 3657, 4190, 4796 |
| BsmBI | CGTCTC | 1 cut(s) | 4796 |
| BsmFI | GGGAC | 4 cut(s) | 194, 248, 4779, 4924 |
| BsmI | GAATGC | 2 cut(s) | 1178, 4018 |
| BsnI | GGCC | 7 cut(s) | 1336, 1480, 2624, 2690, 2873, 3637, 4365 |
| Bso31I | GGTCTC | 2 cut(s) | 535, 3657 |
| BsoBI | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| Bsp119I | TTCGAA | 2 cut(s) | 48, 725 |
| Bsp1407I | TGTACA | 1 cut(s) | 3883 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2664 |
| Bsp19I | CCATGG | 2 cut(s) | 1919, 2625 |
| BspACI | CCGC | 9 cut(s) | 1102, 1337, 2803, 2941, 3193, 3559, 3794, 3960, 4752 |
| BspANI | GGCC | 7 cut(s) | 1336, 1480, 2624, 2690, 2873, 3637, 4365 |
| BspDI | ATCGAT | 2 cut(s) | 3473, 4881 |
| BspHI | TCATGA | 2 cut(s) | 295, 2410 |
| BspLI | GGNNCC | 9 cut(s) | 487, 1479, 1780, 2872, 3174, 3638, 4080, 4912, 4913 |
| BspMAI | CTGCAG | 2 cut(s) | 3186, 4245 |
| BspMI | ACCTGC | 1 cut(s) | 3241 |
| BspOI | GCTAGC | 1 cut(s) | 1446 |
| BspQI | GCTCTTC | 2 cut(s) | 672, 1313 |
| BspT104I | TTCGAA | 2 cut(s) | 48, 725 |
| BspT107I | GGYRCC | 1 cut(s) | 485 |
| BspTI | CTTAAG | 1 cut(s) | 3676 |
| BspTNI | GGTCTC | 2 cut(s) | 535, 3657 |
| BsrDI | GCAATG | 1 cut(s) | 2920 |
| BsrFI | RCCGGY | 1 cut(s) | 4165 |
| BsrGI | TGTACA | 1 cut(s) | 3883 |
| BssAI | RCCGGY | 1 cut(s) | 4165 |
| BssNI | GRCGYC | 1 cut(s) | 4920 |
| BssSI | CACGAG | 2 cut(s) | 1995, 2130 |
| BssT1I | CCWWGG | 7 cut(s) | 1057, 1733, 1919, 2625, 3834, 4110, 4360 |
| Bst2BI | CACGAG | 2 cut(s) | 1995, 2130 |
| Bst2UI | CCWGG | 4 cut(s) | 2013, 2744, 3641, 4917 |
| Bst4CI | ACNGT | 9 cut(s) | 11, 719, 817, 1331, 1773, 2039, 3508, 4124, 4452 |
| BstACI | GRCGYC | 1 cut(s) | 4920 |
| BstAFI | CTTAAG | 1 cut(s) | 3676 |
| BstAUI | TGTACA | 1 cut(s) | 3883 |
| BstBAI | YACGTR | 3 cut(s) | 1682, 2045, 2246 |
| BstBI | TTCGAA | 2 cut(s) | 48, 725 |
| BstDSI | CCRYGG | 2 cut(s) | 1919, 2625 |
| BstEII | GGTNACC | 1 cut(s) | 857 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 852, 2816, 4241 |
| BstHHI | GCGC | 3 cut(s) | 189, 2400, 4674 |
| BstMAI | GTCTC | 9 cut(s) | 535, 1993, 2073, 2286, 2537, 2701, 3657, 4190, 4796 |
| BstNI | CCWGG | 4 cut(s) | 2013, 2744, 3641, 4917 |
| BstNSI | RCATGY | 2 cut(s) | 1343, 2129 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4232 |
| BstPI | GGTNACC | 1 cut(s) | 857 |
| BstSCI | CCNGG | 9 cut(s) | 211, 234, 280, 2011, 2742, 3639, 4667, 4795, 4915 |
| BstSFI | CTRYAG | 4 cut(s) | 89, 375, 3182, 4241 |
| BstSLI | GKGCMC | 5 cut(s) | 1057, 1308, 1681, 1687, 2044 |
| BstV2I | GAAGAC | 3 cut(s) | 1263, 4308, 4899 |
| BstX2I | RGATCY | 9 cut(s) | 191, 439, 1237, 1597, 1778, 2834, 3613, 3710, 4664 |
| BstYI | RGATCY | 9 cut(s) | 191, 439, 1237, 1597, 1778, 2834, 3613, 3710, 4664 |
| Bsu15I | ATCGAT | 2 cut(s) | 3473, 4881 |
| Bsu36I | CCTNAGG | 1 cut(s) | 849 |
| BsuI | GTATCC | 3 cut(s) | 3023, 3418, 3967 |
| BsuRI | GGCC | 7 cut(s) | 1336, 1480, 2624, 2690, 2873, 3637, 4365 |
| BsuTUI | ATCGAT | 2 cut(s) | 3473, 4881 |
| BtgI | CCRYGG | 2 cut(s) | 1919, 2625 |
| BtgZI | GCGATG | 2 cut(s) | 1191, 2168 |
| BtrI | CACGTC | 1 cut(s) | 4306 |
| BtsI | GCAGTG | 3 cut(s) | 172, 2281, 3048 |
| BveI | ACCTGC | 1 cut(s) | 3241 |
| CaiI | CAGNNNCTG | 3 cut(s) | 605, 3314, 4199 |
| CciI | TCATGA | 2 cut(s) | 295, 2410 |
| CfoI | GCGC | 3 cut(s) | 189, 2400, 4674 |
| Cfr10I | RCCGGY | 1 cut(s) | 4165 |
| Cfr13I | GGNCC | 8 cut(s) | 147, 994, 1478, 2622, 2689, 2871, 3636, 4911 |
| ClaI | ATCGAT | 2 cut(s) | 3473, 4881 |
| CseI | GACGC | 3 cut(s) | 2522, 2586, 4909 |
| CspAI | ACCGGT | 1 cut(s) | 4165 |
| DraI | TTTAAA | 1 cut(s) | 3285 |
| DraIII | CACNNNGTG | 1 cut(s) | 1013 |
| EaeI | YGGCCR | 1 cut(s) | 4363 |
| EciI | GGCGGA | 2 cut(s) | 2792, 3949 |
| Ecl136II | GAGCTC | 1 cut(s) | 2171 |
| Eco130I | CCWWGG | 7 cut(s) | 1057, 1733, 1919, 2625, 3834, 4110, 4360 |
| Eco24I | GRGCYC | 2 cut(s) | 38, 2173 |
| Eco31I | GGTCTC | 2 cut(s) | 535, 3657 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 3 cut(s) | 147, 994, 4911 |
| Eco53kI | GAGCTC | 1 cut(s) | 2171 |
| Eco72I | CACGTG | 1 cut(s) | 1682 |
| Eco81I | CCTNAGG | 1 cut(s) | 849 |
| Eco88I | CYCGRG | 6 cut(s) | 177, 443, 532, 2993, 3383, 3902 |
| Eco91I | GGTNACC | 1 cut(s) | 857 |
| EcoICRI | GAGCTC | 1 cut(s) | 2171 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 852, 2816, 4241 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1478, 4911 |
| EcoO65I | GGTNACC | 1 cut(s) | 857 |
| EcoRI | GAATTC | 2 cut(s) | 2955, 4621 |
| EcoRII | CCWGG | 4 cut(s) | 2011, 2742, 3639, 4915 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 7 cut(s) | 1057, 1733, 1919, 2625, 3834, 4110, 4360 |
| EcoT22I | ATGCAT | 2 cut(s) | 1699, 1720 |
| EcoT38I | GRGCYC | 2 cut(s) | 38, 2173 |
| ErhI | CCWWGG | 7 cut(s) | 1057, 1733, 1919, 2625, 3834, 4110, 4360 |
| Esp3I | CGTCTC | 1 cut(s) | 4796 |
| FaqI | GGGAC | 4 cut(s) | 194, 248, 4779, 4924 |
| FauI | CCCGC | 2 cut(s) | 3200, 3552 |
| FbaI | TGATCA | 1 cut(s) | 3150 |
| FblI | GTMKAC | 1 cut(s) | 971 |
| FriOI | GRGCYC | 2 cut(s) | 38, 2173 |
| GlaI | GCGC | 3 cut(s) | 188, 2399, 4673 |
| GsaI | CCCAGC | 2 cut(s) | 199, 4411 |
| GsuI | CTGGAG | 2 cut(s) | 2765, 4335 |
| HaeIII | GGCC | 7 cut(s) | 1336, 1480, 2624, 2690, 2873, 3637, 4365 |
| HapII | CCGG | 7 cut(s) | 212, 235, 281, 3097, 4166, 4668, 4797 |
| HgaI | GACGC | 3 cut(s) | 2522, 2586, 4909 |
| HhaI | GCGC | 3 cut(s) | 189, 2400, 4674 |
| Hin1I | GRCGYC | 1 cut(s) | 4920 |
| Hin6I | GCGC | 3 cut(s) | 187, 2398, 4672 |
| HinP1I | GCGC | 3 cut(s) | 187, 2398, 4672 |
| HincII | GTYRAC | 4 cut(s) | 1821, 2848, 4120, 4227 |
| HindII | GTYRAC | 4 cut(s) | 1821, 2848, 4120, 4227 |
| HindIII | AAGCTT | 4 cut(s) | 701, 2292, 2405, 3287 |
| HpaI | GTTAAC | 1 cut(s) | 4120 |
| HpaII | CCGG | 7 cut(s) | 212, 235, 281, 3097, 4166, 4668, 4797 |
| HphI | GGTGA | 8 cut(s) | 461, 661, 812, 869, 2001, 2336, 2867, 3986 |
| Hpy99I | CGWCG | 1 cut(s) | 4925 |
| HpyCH4III | ACNGT | 9 cut(s) | 11, 719, 817, 1331, 1773, 2039, 3508, 4124, 4452 |
| HpyCH4IV | ACGT | 8 cut(s) | 753, 1681, 1965, 2005, 2044, 2223, 2245, 4305 |
| HpySE526I | ACGT | 8 cut(s) | 753, 1681, 1965, 2005, 2044, 2223, 2245, 4305 |
| Hsp92I | GRCGYC | 1 cut(s) | 4920 |
| HspAI | GCGC | 3 cut(s) | 187, 2398, 4672 |
| KflI | GGGWCCC | 1 cut(s) | 4911 |
| Ksp22I | TGATCA | 1 cut(s) | 3150 |
| KspAI | GTTAAC | 1 cut(s) | 4120 |
| LguI | GCTCTTC | 2 cut(s) | 672, 1313 |
| LmnI | GCTCC | 9 cut(s) | 292, 1803, 1921, 2746, 3172, 3555, 3796, 4078, 4362 |
| MaeII | ACGT | 8 cut(s) | 753, 1681, 1965, 2005, 2044, 2223, 2245, 4305 |
| MfeI | CAATTG | 2 cut(s) | 900, 3733 |
| MflI | RGATCY | 9 cut(s) | 191, 439, 1237, 1597, 1778, 2834, 3613, 3710, 4664 |
| MlsI | TGGCCA | 1 cut(s) | 4365 |
| MluNI | TGGCCA | 1 cut(s) | 4365 |
| MlyI | GAGTC | 5 cut(s) | 1649, 2288, 3959, 4426, 4801 |
| MmeI | TCCRAC | 1 cut(s) | 125 |
| Mox20I | TGGCCA | 1 cut(s) | 4365 |
| Mph1103I | ATGCAT | 2 cut(s) | 1699, 1720 |
| MroXI | GAANNNNTTC | 5 cut(s) | 2295, 2439, 2634, 2836, 3816 |
| MscI | TGGCCA | 1 cut(s) | 4365 |
| MslI | CAYNNNNRTG | 5 cut(s) | 546, 1250, 2130, 3365, 3398 |
| Msp20I | TGGCCA | 1 cut(s) | 4365 |
| MspA1I | CMGCKG | 2 cut(s) | 1102, 3458 |
| MspCI | CTTAAG | 1 cut(s) | 3676 |
| MspI | CCGG | 7 cut(s) | 212, 235, 281, 3097, 4166, 4668, 4797 |
| MspR9I | CCNGG | 9 cut(s) | 213, 236, 282, 2013, 2744, 3641, 4669, 4797, 4917 |
| MunI | CAATTG | 2 cut(s) | 900, 3733 |
| Mva1269I | GAATGC | 2 cut(s) | 1178, 4018 |
| MvaI | CCWGG | 4 cut(s) | 2013, 2744, 3641, 4917 |
| NciI | CCSGG | 5 cut(s) | 213, 236, 282, 4669, 4797 |
| NcoI | CCATGG | 2 cut(s) | 1919, 2625 |
| NheI | GCTAGC | 1 cut(s) | 1442 |
| NlaIV | GGNNCC | 9 cut(s) | 487, 1479, 1780, 2872, 3174, 3638, 4080, 4912, 4913 |
| NmeAIII | GCCGAG | 1 cut(s) | 1813 |
| NmuCI | GTSAC | 6 cut(s) | 857, 1067, 3268, 3508, 3800, 4466 |
| NsiI | ATGCAT | 2 cut(s) | 1699, 1720 |
| NspI | RCATGY | 2 cut(s) | 1343, 2129 |
| NspV | TTCGAA | 2 cut(s) | 48, 725 |
| OliI | CACNNNNGTG | 1 cut(s) | 1250 |
| PaeI | GCATGC | 2 cut(s) | 1343, 2129 |
| PaeR7I | CTCGAG | 3 cut(s) | 443, 532, 3383 |
| PagI | TCATGA | 2 cut(s) | 295, 2410 |
| PciSI | GCTCTTC | 2 cut(s) | 672, 1313 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 408, 2002 |
| PctI | GAATGC | 2 cut(s) | 1178, 4018 |
| PdmI | GAANNNNTTC | 5 cut(s) | 2295, 2439, 2634, 2836, 3816 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2698 |
| PfoI | TCCNGGA | 1 cut(s) | 4795 |
| PinAI | ACCGGT | 1 cut(s) | 4165 |
| PleI | GAGTC | 5 cut(s) | 1648, 2287, 3958, 4425, 4800 |
| PmaCI | CACGTG | 1 cut(s) | 1682 |
| PmlI | CACGTG | 1 cut(s) | 1682 |
| PpsI | GAGTC | 5 cut(s) | 1648, 2287, 3958, 4425, 4800 |
| Ppu21I | YACGTR | 3 cut(s) | 1682, 2045, 2246 |
| PpuMI | RGGWCCY | 1 cut(s) | 4911 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4232 |
| PsiI | TTATAA | 1 cut(s) | 2058 |
| Psp124BI | GAGCTC | 1 cut(s) | 2173 |
| Psp5II | RGGWCCY | 1 cut(s) | 4911 |
| Psp6I | CCWGG | 4 cut(s) | 2011, 2742, 3639, 4915 |
| PspCI | CACGTG | 1 cut(s) | 1682 |
| PspEI | GGTNACC | 1 cut(s) | 857 |
| PspFI | CCCAGC | 2 cut(s) | 195, 4407 |
| PspGI | CCWGG | 4 cut(s) | 2011, 2742, 3639, 4915 |
| PspN4I | GGNNCC | 9 cut(s) | 487, 1479, 1780, 2872, 3174, 3638, 4080, 4912, 4913 |
| PspPI | GGNCC | 8 cut(s) | 147, 994, 1478, 2622, 2689, 2871, 3636, 4911 |
| PspPPI | RGGWCCY | 1 cut(s) | 4911 |
| PstI | CTGCAG | 2 cut(s) | 3186, 4245 |
| PstNI | CAGNNNCTG | 3 cut(s) | 605, 3314, 4199 |
| PsuI | RGATCY | 9 cut(s) | 191, 439, 1237, 1597, 1778, 2834, 3613, 3710, 4664 |
| PvuII | CAGCTG | 1 cut(s) | 3458 |
| RseI | CAYNNNNRTG | 5 cut(s) | 546, 1250, 2130, 3365, 3398 |
| SacI | GAGCTC | 1 cut(s) | 2173 |
| SapI | GCTCTTC | 2 cut(s) | 672, 1313 |
| Sau96I | GGNCC | 8 cut(s) | 147, 994, 1478, 2622, 2689, 2871, 3636, 4911 |
| ScaI | AGTACT | 2 cut(s) | 721, 4320 |
| SchI | GAGTC | 5 cut(s) | 1649, 2288, 3959, 4426, 4801 |
| ScrFI | CCNGG | 9 cut(s) | 213, 236, 282, 2013, 2744, 3641, 4669, 4797, 4917 |
| SfcI | CTRYAG | 4 cut(s) | 89, 375, 3182, 4241 |
| Sfr274I | CTCGAG | 3 cut(s) | 443, 532, 3383 |
| SfuI | TTCGAA | 2 cut(s) | 48, 725 |
| SinI | GGWCC | 3 cut(s) | 147, 994, 4911 |
| SlaI | CTCGAG | 3 cut(s) | 443, 532, 3383 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 546, 1250, 2130, 3365, 3398 |
| SmlI | CTYRAG | 7 cut(s) | 443, 532, 2304, 3383, 3572, 3676, 4741 |
| SmoI | CTYRAG | 7 cut(s) | 443, 532, 2304, 3383, 3572, 3676, 4741 |
| SphI | GCATGC | 2 cut(s) | 1343, 2129 |
| SsiI | CCGC | 9 cut(s) | 1102, 1337, 2803, 2941, 3193, 3559, 3794, 3960, 4752 |
| SstI | GAGCTC | 1 cut(s) | 2173 |
| StyD4I | CCNGG | 9 cut(s) | 211, 234, 280, 2011, 2742, 3639, 4667, 4795, 4915 |
| StyI | CCWWGG | 7 cut(s) | 1057, 1733, 1919, 2625, 3834, 4110, 4360 |
| TaaI | ACNGT | 9 cut(s) | 11, 719, 817, 1331, 1773, 2039, 3508, 4124, 4452 |
| TaiI | ACGT | 8 cut(s) | 756, 1684, 1968, 2008, 2047, 2226, 2248, 4308 |
| TaqII | GACCGA | 1 cut(s) | 2833 |
| TatI | WGTACW | 3 cut(s) | 719, 3883, 4318 |
| TauI | GCSGC | 3 cut(s) | 1105, 1339, 4755 |
| TseFI | GTSAC | 6 cut(s) | 857, 1067, 3268, 3508, 3800, 4466 |
| Tsp45I | GTSAC | 6 cut(s) | 857, 1067, 3268, 3508, 3800, 4466 |
| TspGWI | ACGGA | 5 cut(s) | 1871, 2515, 4577, 4600, 4834 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2698 |
| Vha464I | CTTAAG | 1 cut(s) | 3676 |
| VneI | GTGCAC | 2 cut(s) | 1677, 2040 |
| VpaK11BI | GGWCC | 3 cut(s) | 147, 994, 4911 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 852, 2816, 4241 |
| XbaI | TCTAGA | 2 cut(s) | 3845, 4859 |
| XceI | RCATGY | 2 cut(s) | 1343, 2129 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1295, 3560 |
| XhoI | CTCGAG | 3 cut(s) | 443, 532, 3383 |
| XmaJI | CCTAGG | 1 cut(s) | 1733 |
| XmiI | GTMKAC | 1 cut(s) | 971 |
| XmnI | GAANNNNTTC | 5 cut(s) | 2295, 2439, 2634, 2836, 3816 |
| ZrmI | AGTACT | 2 cut(s) | 721, 4320 |
| Zsp2I | ATGCAT | 2 cut(s) | 1699, 1720 |