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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 |
| malus_domestica | MD14G1208500.v1.1 |
| prunus_persica | Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 |
| pyrus_communis | pycom14g17210 |
| rosa_chinensis | RchiOBHm_Chr7g0182421 |
| rosa_laevigata | RLG00000005124 |
| rosa_multiflora | Rmu_sc0034215.1_g000002 Rmu_sc0034215.1_g000003 Rmu_ssc0000376.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271260 |
| rosa_rugosa | Rorug06G0447500 Rorug06G0447600 Rorug06G0447700 |
| rosa_samantha | Rh7AG051000 Rh7BG050500 Rh7CG052100 Rh7DG049800 |
| rosa_wichuraiana | Rw7G004140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| Acc36I | ACCTGC | 1 cut(s) | 1531 |
| AccB1I | GGYRCC | 3 cut(s) | 479, 1276, 1300 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2692, 3902, 4440 |
| AccBSI | CCGCTC | 1 cut(s) | 2494 |
| AccII | CGCG | 1 cut(s) | 2473 |
| AccIII | TCCGGA | 1 cut(s) | 4717 |
| AciI | CCGC | 9 cut(s) | 602, 1374, 2494, 2545, 2725, 2900, 2935, 3187, 4121 |
| AclI | AACGTT | 1 cut(s) | 471 |
| AclWI | GGATC | 8 cut(s) | 183, 379, 441, 657, 797, 2100, 2784, 4598 |
| AcuI | CTGAAG | 7 cut(s) | 426, 1797, 2117, 3270, 4337, 4582, 4718 |
| AcvI | CACGTG | 1 cut(s) | 2606 |
| AcyI | GRCGYC | 1 cut(s) | 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 4108 |
| AfaI | GTAC | 7 cut(s) | 225, 1484, 1665, 3741, 3879, 3894, 4314 |
| AflII | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| AgeI | ACCGGT | 1 cut(s) | 4159 |
| AhlI | ACTAGT | 1 cut(s) | 2084 |
| AjnI | CCWGG | 5 cut(s) | 2005, 2736, 3258, 3633, 3701 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3741, 3773 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3528, 3560 |
| Alw21I | GWGCWC | 2 cut(s) | 2038, 2167 |
| Alw44I | GTGCAC | 1 cut(s) | 2034 |
| AlwI | GGATC | 8 cut(s) | 183, 379, 441, 657, 797, 2100, 2784, 4598 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 797, 3953 |
| Ama87I | CYCGRG | 1 cut(s) | 1989 |
| Aor13HI | TCCGGA | 1 cut(s) | 4717 |
| AoxI | GGCC | 8 cut(s) | 913, 1194, 1331, 1474, 2616, 2682, 4266, 4376 |
| ApaLI | GTGCAC | 1 cut(s) | 2034 |
| AsiGI | ACCGGT | 1 cut(s) | 4159 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 411, 2433, 2628, 3810 |
| AspA2I | CCTAGG | 1 cut(s) | 1727 |
| AspLEI | GCGC | 4 cut(s) | 38, 186, 2394, 2473 |
| AspS9I | GGNCC | 6 cut(s) | 914, 1474, 2616, 2683, 3905, 4345 |
| AsuC2I | CCSGG | 1 cut(s) | 1133 |
| AsuHPI | GGTGA | 9 cut(s) | 614, 1085, 1300, 2330, 2778, 3274, 3587, 3639, 3871 |
| AsuII | TTCGAA | 1 cut(s) | 48 |
| AsuNHI | GCTAGC | 3 cut(s) | 815, 1439, 4369 |
| AvaI | CYCGRG | 1 cut(s) | 1989 |
| AvaII | GGWCC | 2 cut(s) | 3905, 4345 |
| AvrII | CCTAGG | 1 cut(s) | 1727 |
| BaeGI | GKGCMC | 4 cut(s) | 1054, 1279, 1305, 2038 |
| BanI | GGYRCC | 3 cut(s) | 479, 1276, 1300 |
| BanII | GRGCYC | 1 cut(s) | 2167 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4155, 4187 |
| BauI | CACGAG | 1 cut(s) | 1977 |
| BbrPI | CACGTG | 1 cut(s) | 2606 |
| BbsI | GAAGAC | 2 cut(s) | 3803, 4248 |
| Bbv12I | GWGCWC | 2 cut(s) | 2038, 2167 |
| BceAI | ACGGC | 1 cut(s) | 645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1089, 1123 |
| BciT130I | CCWGG | 5 cut(s) | 2007, 2738, 3260, 3635, 3703 |
| BciVI | GTATCC | 3 cut(s) | 3017, 3412, 4105 |
| BclI | TGATCA | 2 cut(s) | 3144, 4456 |
| BcnI | CCSGG | 1 cut(s) | 1133 |
| BcuI | ACTAGT | 1 cut(s) | 2084 |
| BfmI | CTRYAG | 2 cut(s) | 89, 3176 |
| BfoI | RGCGCY | 1 cut(s) | 39 |
| BfrI | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| BfuAI | ACCTGC | 1 cut(s) | 1531 |
| BfuI | GTATCC | 3 cut(s) | 3017, 3412, 4105 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 921 |
| BglII | AGATCT | 4 cut(s) | 373, 1234, 1594, 3607 |
| BlnI | CCTAGG | 1 cut(s) | 1727 |
| BmcAI | AGTACT | 1 cut(s) | 4314 |
| Bme1390I | CCNGG | 6 cut(s) | 1133, 2007, 2738, 3260, 3635, 3703 |
| Bme18I | GGWCC | 2 cut(s) | 3905, 4345 |
| BmeT110I | CYCGRG | 1 cut(s) | 1989 |
| BmgT120I | GGNCC | 6 cut(s) | 914, 1474, 2616, 2683, 3905, 4345 |
| BmiI | GGNNCC | 5 cut(s) | 481, 711, 916, 1278, 1302 |
| BmrFI | CCNGG | 6 cut(s) | 1133, 2007, 2738, 3260, 3635, 3703 |
| BmrI | ACTGGG | 1 cut(s) | 3047 |
| BmtI | GCTAGC | 3 cut(s) | 819, 1443, 4373 |
| BmuI | ACTGGG | 1 cut(s) | 3047 |
| BpiI | GAAGAC | 2 cut(s) | 3803, 4248 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1205, 1237 |
| BpmI | CTGGAG | 2 cut(s) | 6, 4329 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2881 |
| Bpu14I | TTCGAA | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 5 cut(s) | 1427, 2032, 2547, 3008, 3398 |
| BpuMI | CCSGG | 1 cut(s) | 1133 |
| BsaAI | YACGTR | 1 cut(s) | 2606 |
| BsaBI | GATNNNNATC | 3 cut(s) | 513, 648, 2856 |
| BsaHI | GRCGYC | 1 cut(s) | 632 |
| BsaI | GGTCTC | 1 cut(s) | 529 |
| BsaJI | CCNNGG | 9 cut(s) | 232, 1054, 1727, 1913, 1923, 3633, 3828, 4269, 4519 |
| BsaWI | WCCGGW | 2 cut(s) | 4159, 4717 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2008, 2038, 3528, 3558 |
| Bse118I | RCCGGY | 3 cut(s) | 3597, 4159, 4618 |
| Bse1I | ACTGG | 4 cut(s) | 3042, 3908, 4120, 4312 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| Bse8I | GATNNNNATC | 3 cut(s) | 513, 648, 2856 |
| BseAI | TCCGGA | 1 cut(s) | 4717 |
| BseBI | CCWGG | 5 cut(s) | 2007, 2738, 3260, 3635, 3703 |
| BseDI | CCNNGG | 9 cut(s) | 232, 1054, 1727, 1913, 1923, 3633, 3828, 4269, 4519 |
| BseJI | GATNNNNATC | 3 cut(s) | 513, 648, 2856 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BseNI | ACTGG | 4 cut(s) | 3042, 3908, 4120, 4312 |
| BseRI | GAGGAG | 5 cut(s) | 2029, 2434, 2591, 2594, 2681 |
| BseSI | GKGCMC | 4 cut(s) | 1054, 1279, 1305, 2038 |
| BseYI | CCCAGC | 2 cut(s) | 192, 2658 |
| BsgI | GTGCAG | 3 cut(s) | 1017, 1470, 2619 |
| Bsh1236I | CGCG | 1 cut(s) | 2473 |
| BshFI | GGCC | 8 cut(s) | 915, 1196, 1333, 1476, 2618, 2684, 4268, 4378 |
| BshNI | GGYRCC | 3 cut(s) | 479, 1276, 1300 |
| BshTI | ACCGGT | 1 cut(s) | 4159 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2038, 2167 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1989 |
| BsiSI | CCGG | 5 cut(s) | 1132, 3598, 4160, 4619, 4718 |
| BslFI | GGGAC | 4 cut(s) | 309, 542, 856, 1745 |
| BsmFI | GGGAC | 4 cut(s) | 309, 542, 856, 1745 |
| BsmI | GAATGC | 3 cut(s) | 127, 2253, 4371 |
| BsnI | GGCC | 8 cut(s) | 915, 1196, 1333, 1476, 2618, 2684, 4268, 4378 |
| Bso31I | GGTCTC | 1 cut(s) | 529 |
| BsoBI | CYCGRG | 1 cut(s) | 1989 |
| Bsp119I | TTCGAA | 1 cut(s) | 48 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1054, 1279, 1305, 2038, 2167 |
| Bsp13I | TCCGGA | 1 cut(s) | 4717 |
| Bsp1407I | TGTACA | 2 cut(s) | 223, 3877 |
| Bsp19I | CCATGG | 2 cut(s) | 1913, 1923 |
| BspACI | CCGC | 9 cut(s) | 602, 1374, 2494, 2545, 2725, 2900, 2935, 3187, 4121 |
| BspANI | GGCC | 8 cut(s) | 915, 1196, 1333, 1476, 2618, 2684, 4268, 4378 |
| BspEI | TCCGGA | 1 cut(s) | 4717 |
| BspFNI | CGCG | 1 cut(s) | 2473 |
| BspHI | TCATGA | 1 cut(s) | 2404 |
| BspLI | GGNNCC | 5 cut(s) | 481, 711, 916, 1278, 1302 |
| BspMAI | CTGCAG | 1 cut(s) | 3180 |
| BspMI | ACCTGC | 1 cut(s) | 1531 |
| BspOI | GCTAGC | 3 cut(s) | 819, 1443, 4373 |
| BspPI | GGATC | 8 cut(s) | 183, 379, 441, 657, 797, 2100, 2784, 4598 |
| BspT104I | TTCGAA | 1 cut(s) | 48 |
| BspT107I | GGYRCC | 3 cut(s) | 479, 1276, 1300 |
| BspTI | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| BspTNI | GGTCTC | 1 cut(s) | 529 |
| BsrBI | CCGCTC | 1 cut(s) | 2494 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BsrFI | RCCGGY | 3 cut(s) | 3597, 4159, 4618 |
| BsrGI | TGTACA | 2 cut(s) | 223, 3877 |
| BsrI | ACTGG | 4 cut(s) | 3042, 3908, 4120, 4312 |
| BssAI | RCCGGY | 3 cut(s) | 3597, 4159, 4618 |
| BssECI | CCNNGG | 9 cut(s) | 232, 1054, 1727, 1913, 1923, 3633, 3828, 4269, 4519 |
| BssNI | GRCGYC | 1 cut(s) | 632 |
| BssSI | CACGAG | 1 cut(s) | 1977 |
| BssT1I | CCWWGG | 7 cut(s) | 232, 1054, 1727, 1913, 1923, 3828, 4519 |
| Bst2BI | CACGAG | 1 cut(s) | 1977 |
| Bst2UI | CCWGG | 5 cut(s) | 2007, 2738, 3260, 3635, 3703 |
| Bst4CI | ACNGT | 7 cut(s) | 164, 588, 847, 1767, 1812, 3502, 4142 |
| BstACI | GRCGYC | 1 cut(s) | 632 |
| BstAFI | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2597, 4007, 4366 |
| BstAUI | TGTACA | 2 cut(s) | 223, 3877 |
| BstBAI | YACGTR | 1 cut(s) | 2606 |
| BstBI | TTCGAA | 1 cut(s) | 48 |
| BstDSI | CCRYGG | 2 cut(s) | 1913, 1923 |
| BstEII | GGTNACC | 1 cut(s) | 3645 |
| BstFNI | CGCG | 1 cut(s) | 2473 |
| BstH2I | RGCGCY | 1 cut(s) | 39 |
| BstHHI | GCGC | 4 cut(s) | 38, 186, 2394, 2473 |
| BstNI | CCWGG | 5 cut(s) | 2007, 2738, 3260, 3635, 3703 |
| BstNSI | RCATGY | 3 cut(s) | 1340, 2123, 2255 |
| BstPI | GGTNACC | 1 cut(s) | 3645 |
| BstSCI | CCNGG | 6 cut(s) | 1131, 2005, 2736, 3258, 3633, 3701 |
| BstSFI | CTRYAG | 2 cut(s) | 89, 3176 |
| BstSLI | GKGCMC | 4 cut(s) | 1054, 1279, 1305, 2038 |
| BstUI | CGCG | 1 cut(s) | 2473 |
| BstV2I | GAAGAC | 2 cut(s) | 3803, 4248 |
| BstX2I | RGATCY | 8 cut(s) | 188, 373, 384, 433, 1234, 1594, 2092, 3607 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 239 |
| BstYI | RGATCY | 8 cut(s) | 188, 373, 384, 433, 1234, 1594, 2092, 3607 |
| BsuI | GTATCC | 3 cut(s) | 3017, 3412, 4105 |
| BsuRI | GGCC | 8 cut(s) | 915, 1196, 1333, 1476, 2618, 2684, 4268, 4378 |
| BtgI | CCRYGG | 2 cut(s) | 1913, 1923 |
| BtgZI | GCGATG | 2 cut(s) | 1188, 2865 |
| BtsI | GCAGTG | 2 cut(s) | 2275, 3752 |
| BtsIMutI | CAGTG | 7 cut(s) | 642, 852, 2275, 3035, 3752, 4092, 4606 |
| BveI | ACCTGC | 1 cut(s) | 1531 |
| CaiI | CAGNNNCTG | 2 cut(s) | 797, 3953 |
| CciI | TCATGA | 1 cut(s) | 2404 |
| CfoI | GCGC | 4 cut(s) | 38, 186, 2394, 2473 |
| Cfr10I | RCCGGY | 3 cut(s) | 3597, 4159, 4618 |
| Cfr13I | GGNCC | 6 cut(s) | 914, 1474, 2616, 2683, 3905, 4345 |
| CseI | GACGC | 2 cut(s) | 621, 2516 |
| Csp6I | GTAC | 7 cut(s) | 224, 1483, 1664, 3740, 3878, 3893, 4313 |
| CspAI | ACCGGT | 1 cut(s) | 4159 |
| CviQI | GTAC | 7 cut(s) | 224, 1483, 1664, 3740, 3878, 3893, 4313 |
| DraI | TTTAAA | 2 cut(s) | 2808, 3279 |
| DraIII | CACNNNGTG | 1 cut(s) | 4108 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| Ecl136II | GAGCTC | 1 cut(s) | 2165 |
| Eco130I | CCWWGG | 7 cut(s) | 232, 1054, 1727, 1913, 1923, 3828, 4519 |
| Eco147I | AGGCCT | 2 cut(s) | 4268, 4378 |
| Eco24I | GRGCYC | 1 cut(s) | 2167 |
| Eco31I | GGTCTC | 1 cut(s) | 529 |
| Eco47I | GGWCC | 2 cut(s) | 3905, 4345 |
| Eco53kI | GAGCTC | 1 cut(s) | 2165 |
| Eco57I | CTGAAG | 7 cut(s) | 426, 1797, 2117, 3270, 4337, 4582, 4718 |
| Eco72I | CACGTG | 1 cut(s) | 2606 |
| Eco88I | CYCGRG | 1 cut(s) | 1989 |
| Eco91I | GGTNACC | 1 cut(s) | 3645 |
| EcoICRI | GAGCTC | 1 cut(s) | 2165 |
| EcoO109I | RGGNCCY | 1 cut(s) | 914 |
| EcoO65I | GGTNACC | 1 cut(s) | 3645 |
| EcoRI | GAATTC | 2 cut(s) | 1687, 1903 |
| EcoRII | CCWGG | 5 cut(s) | 2005, 2736, 3258, 3633, 3701 |
| EcoT14I | CCWWGG | 7 cut(s) | 232, 1054, 1727, 1913, 1923, 3828, 4519 |
| EcoT22I | ATGCAT | 2 cut(s) | 1714, 2253 |
| EcoT38I | GRGCYC | 1 cut(s) | 2167 |
| ErhI | CCWWGG | 7 cut(s) | 232, 1054, 1727, 1913, 1923, 3828, 4519 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2878, 2910, 4521, 4553 |
| FaqI | GGGAC | 4 cut(s) | 309, 542, 856, 1745 |
| FauI | CCCGC | 1 cut(s) | 3194 |
| FbaI | TGATCA | 2 cut(s) | 3144, 4456 |
| FriOI | GRGCYC | 1 cut(s) | 2167 |
| GlaI | GCGC | 4 cut(s) | 37, 185, 2393, 2472 |
| GsaI | CCCAGC | 2 cut(s) | 196, 2662 |
| GsuI | CTGGAG | 2 cut(s) | 6, 4329 |
| HaeII | RGCGCY | 1 cut(s) | 39 |
| HaeIII | GGCC | 8 cut(s) | 915, 1196, 1333, 1476, 2618, 2684, 4268, 4378 |
| HapII | CCGG | 5 cut(s) | 1132, 3598, 4160, 4619, 4718 |
| HgaI | GACGC | 2 cut(s) | 621, 2516 |
| HhaI | GCGC | 4 cut(s) | 38, 186, 2394, 2473 |
| Hin1I | GRCGYC | 1 cut(s) | 632 |
| Hin6I | GCGC | 4 cut(s) | 36, 184, 2392, 2471 |
| HinP1I | GCGC | 4 cut(s) | 36, 184, 2392, 2471 |
| HincII | GTYRAC | 4 cut(s) | 1815, 1848, 4138, 4221 |
| HindII | GTYRAC | 4 cut(s) | 1815, 1848, 4138, 4221 |
| HindIII | AAGCTT | 1 cut(s) | 2171 |
| HpaI | GTTAAC | 1 cut(s) | 4138 |
| HpaII | CCGG | 5 cut(s) | 1132, 3598, 4160, 4619, 4718 |
| HphI | GGTGA | 9 cut(s) | 614, 1085, 1300, 2330, 2778, 3274, 3587, 3639, 3871 |
| Hpy166II | GTNNAC | 7 cut(s) | 1163, 1485, 1815, 1848, 2036, 4138, 4221 |
| Hpy8I | GTNNAC | 7 cut(s) | 1163, 1485, 1815, 1848, 2036, 4138, 4221 |
| Hpy99I | CGWCG | 1 cut(s) | 2802 |
| HpyCH4III | ACNGT | 7 cut(s) | 164, 588, 847, 1767, 1812, 3502, 4142 |
| HpyCH4IV | ACGT | 4 cut(s) | 471, 1517, 2605, 2797 |
| HpySE526I | ACGT | 4 cut(s) | 471, 1517, 2605, 2797 |
| Hsp92I | GRCGYC | 1 cut(s) | 632 |
| HspAI | GCGC | 4 cut(s) | 36, 184, 2392, 2471 |
| Kpn2I | TCCGGA | 1 cut(s) | 4717 |
| Ksp22I | TGATCA | 2 cut(s) | 3144, 4456 |
| KspAI | GTTAAC | 1 cut(s) | 4138 |
| LmnI | GCTCC | 7 cut(s) | 25, 709, 1915, 2581, 3166, 3549, 3568 |
| MaeII | ACGT | 4 cut(s) | 471, 1517, 2605, 2797 |
| MbiI | CCGCTC | 1 cut(s) | 2494 |
| MfeI | CAATTG | 2 cut(s) | 153, 653 |
| MflI | RGATCY | 8 cut(s) | 188, 373, 384, 433, 1234, 1594, 2092, 3607 |
| MhlI | GDGCHC | 5 cut(s) | 1054, 1279, 1305, 2038, 2167 |
| MlyI | GAGTC | 4 cut(s) | 2282, 3081, 3953, 4561 |
| MmeI | TCCRAC | 3 cut(s) | 3115, 3462, 3546 |
| Mph1103I | ATGCAT | 2 cut(s) | 1714, 2253 |
| MroI | TCCGGA | 1 cut(s) | 4717 |
| MroXI | GAANNNNTTC | 4 cut(s) | 411, 2433, 2628, 3810 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2124, 3359, 4131 |
| MspA1I | CMGCKG | 2 cut(s) | 2545, 4181 |
| MspCI | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| MspI | CCGG | 5 cut(s) | 1132, 3598, 4160, 4619, 4718 |
| MspR9I | CCNGG | 6 cut(s) | 1133, 2007, 2738, 3260, 3635, 3703 |
| MunI | CAATTG | 2 cut(s) | 153, 653 |
| Mva1269I | GAATGC | 3 cut(s) | 127, 2253, 4371 |
| MvaI | CCWGG | 5 cut(s) | 2007, 2738, 3260, 3635, 3703 |
| MvnI | CGCG | 1 cut(s) | 2473 |
| NciI | CCSGG | 1 cut(s) | 1133 |
| NcoI | CCATGG | 2 cut(s) | 1913, 1923 |
| NheI | GCTAGC | 3 cut(s) | 815, 1439, 4369 |
| NlaIV | GGNNCC | 5 cut(s) | 481, 711, 916, 1278, 1302 |
| NmuCI | GTSAC | 7 cut(s) | 140, 1064, 1319, 1609, 3262, 3518, 3645 |
| NsiI | ATGCAT | 2 cut(s) | 1714, 2253 |
| NspI | RCATGY | 3 cut(s) | 1340, 2123, 2255 |
| NspV | TTCGAA | 1 cut(s) | 48 |
| PaeI | GCATGC | 2 cut(s) | 2123, 2255 |
| PagI | TCATGA | 1 cut(s) | 2404 |
| PceI | AGGCCT | 2 cut(s) | 4268, 4378 |
| PctI | GAATGC | 3 cut(s) | 127, 2253, 4371 |
| PdmI | GAANNNNTTC | 4 cut(s) | 411, 2433, 2628, 3810 |
| PflFI | GACNNNGTC | 1 cut(s) | 631 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2692, 3902, 4440 |
| PinAI | ACCGGT | 1 cut(s) | 4159 |
| PleI | GAGTC | 4 cut(s) | 2281, 3081, 3952, 4560 |
| PmaCI | CACGTG | 1 cut(s) | 2606 |
| PmlI | CACGTG | 1 cut(s) | 2606 |
| PpsI | GAGTC | 4 cut(s) | 2281, 3081, 3952, 4560 |
| Ppu21I | YACGTR | 1 cut(s) | 2606 |
| Psp124BI | GAGCTC | 1 cut(s) | 2167 |
| Psp1406I | AACGTT | 1 cut(s) | 471 |
| Psp6I | CCWGG | 5 cut(s) | 2005, 2736, 3258, 3633, 3701 |
| PspCI | CACGTG | 1 cut(s) | 2606 |
| PspEI | GGTNACC | 1 cut(s) | 3645 |
| PspFI | CCCAGC | 2 cut(s) | 192, 2658 |
| PspGI | CCWGG | 5 cut(s) | 2005, 2736, 3258, 3633, 3701 |
| PspN4I | GGNNCC | 5 cut(s) | 481, 711, 916, 1278, 1302 |
| PspPI | GGNCC | 6 cut(s) | 914, 1474, 2616, 2683, 3905, 4345 |
| PstI | CTGCAG | 1 cut(s) | 3180 |
| PstNI | CAGNNNCTG | 2 cut(s) | 797, 3953 |
| PsuI | RGATCY | 8 cut(s) | 188, 373, 384, 433, 1234, 1594, 2092, 3607 |
| PsyI | GACNNNGTC | 1 cut(s) | 631 |
| PvuII | CAGCTG | 1 cut(s) | 4181 |
| RsaI | GTAC | 7 cut(s) | 225, 1484, 1665, 3741, 3879, 3894, 4314 |
| RsaNI | GTAC | 7 cut(s) | 224, 1483, 1664, 3740, 3878, 3893, 4313 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2124, 3359, 4131 |
| SacI | GAGCTC | 1 cut(s) | 2167 |
| Sau96I | GGNCC | 6 cut(s) | 914, 1474, 2616, 2683, 3905, 4345 |
| ScaI | AGTACT | 1 cut(s) | 4314 |
| SchI | GAGTC | 4 cut(s) | 2282, 3081, 3953, 4561 |
| ScrFI | CCNGG | 6 cut(s) | 1133, 2007, 2738, 3260, 3635, 3703 |
| SduI | GDGCHC | 5 cut(s) | 1054, 1279, 1305, 2038, 2167 |
| SfcI | CTRYAG | 2 cut(s) | 89, 3176 |
| SfuI | TTCGAA | 1 cut(s) | 48 |
| SinI | GGWCC | 2 cut(s) | 3905, 4345 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2124, 3359, 4131 |
| SmlI | CTYRAG | 8 cut(s) | 1406, 1478, 2011, 2562, 2987, 3286, 3377, 3670 |
| SmoI | CTYRAG | 8 cut(s) | 1406, 1478, 2011, 2562, 2987, 3286, 3377, 3670 |
| SpeI | ACTAGT | 1 cut(s) | 2084 |
| SphI | GCATGC | 2 cut(s) | 2123, 2255 |
| SseBI | AGGCCT | 2 cut(s) | 4268, 4378 |
| SsiI | CCGC | 9 cut(s) | 602, 1374, 2494, 2545, 2725, 2900, 2935, 3187, 4121 |
| SstI | GAGCTC | 1 cut(s) | 2167 |
| StuI | AGGCCT | 2 cut(s) | 4268, 4378 |
| StyD4I | CCNGG | 6 cut(s) | 1131, 2005, 2736, 3258, 3633, 3701 |
| StyI | CCWWGG | 7 cut(s) | 232, 1054, 1727, 1913, 1923, 3828, 4519 |
| TaaI | ACNGT | 7 cut(s) | 164, 588, 847, 1767, 1812, 3502, 4142 |
| TaiI | ACGT | 4 cut(s) | 474, 1520, 2608, 2800 |
| TaqI | TCGA | 7 cut(s) | 48, 134, 2278, 2622, 2800, 2953, 3628 |
| TatI | WGTACW | 4 cut(s) | 223, 1482, 3877, 4312 |
| TauI | GCSGC | 1 cut(s) | 2727 |
| TscAI | CASTG | 7 cut(s) | 642, 852, 2275, 3042, 3759, 4092, 4606 |
| TseFI | GTSAC | 7 cut(s) | 140, 1064, 1319, 1609, 3262, 3518, 3645 |
| Tsp45I | GTSAC | 7 cut(s) | 140, 1064, 1319, 1609, 3262, 3518, 3645 |
| TspRI | CASTG | 7 cut(s) | 642, 852, 2275, 3042, 3759, 4092, 4606 |
| Tth111I | GACNNNGTC | 1 cut(s) | 631 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2692, 3902, 4440 |
| Vha464I | CTTAAG | 3 cut(s) | 1478, 3286, 3670 |
| VneI | GTGCAC | 1 cut(s) | 2034 |
| VpaK11BI | GGWCC | 2 cut(s) | 3905, 4345 |
| XbaI | TCTAGA | 3 cut(s) | 376, 436, 1715 |
| XceI | RCATGY | 3 cut(s) | 1340, 2123, 2255 |
| XmaJI | CCTAGG | 1 cut(s) | 1727 |
| XmnI | GAANNNNTTC | 4 cut(s) | 411, 2433, 2628, 3810 |
| ZrmI | AGTACT | 1 cut(s) | 4314 |
| Zsp2I | ATGCAT | 2 cut(s) | 1714, 2253 |