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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 |
| malus_domestica | MD14G1208500.v1.1 |
| prunus_persica | Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 |
| pyrus_communis | pycom14g17210 |
| rosa_chinensis | RchiOBHm_Chr7g0182421 |
| rosa_laevigata | RLG00000005124 |
| rosa_multiflora | Rmu_sc0034215.1_g000002 Rmu_sc0034215.1_g000003 Rmu_ssc0000376.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00271260 |
| rosa_rugosa | Rorug06G0447500 Rorug06G0447600 Rorug06G0447700 |
| rosa_samantha | Rh7AG051000 Rh7BG050500 Rh7CG052100 Rh7DG049800 |
| rosa_wichuraiana | Rw7G004140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 67 |
| AccB1I | GGYRCC | 1 cut(s) | 3001 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 904, 2114, 2652 |
| AccBSI | CCGCTC | 1 cut(s) | 706 |
| AccII | CGCG | 1 cut(s) | 685 |
| AccIII | TCCGGA | 1 cut(s) | 3050 |
| AciI | CCGC | 7 cut(s) | 706, 757, 937, 1112, 1147, 1399, 2333 |
| AclWI | GGATC | 5 cut(s) | 312, 996, 2810, 2958, 3006 |
| AcoI | YGGCCR | 1 cut(s) | 3016 |
| AcuI | CTGAAG | 5 cut(s) | 329, 1482, 2549, 2794, 3051 |
| AcvI | CACGTG | 1 cut(s) | 818 |
| AdeI | CACNNNGTG | 1 cut(s) | 2320 |
| AfaI | GTAC | 6 cut(s) | 1953, 2091, 2106, 2526, 2908, 3028 |
| AflII | CTTAAG | 2 cut(s) | 1498, 1882 |
| AgeI | ACCGGT | 1 cut(s) | 2371 |
| AhlI | ACTAGT | 1 cut(s) | 296 |
| AjnI | CCWGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1953, 1985 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1740, 1772 |
| Alw21I | GWGCWC | 2 cut(s) | 250, 379 |
| Alw26I | GTCTC | 7 cut(s) | 199, 279, 492, 907, 1165, 2396, 2423 |
| Alw44I | GTGCAC | 1 cut(s) | 246 |
| AlwI | GGATC | 5 cut(s) | 312, 996, 2810, 2958, 3006 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2165, 3173 |
| Ama87I | CYCGRG | 1 cut(s) | 201 |
| Aor13HI | TCCGGA | 1 cut(s) | 3050 |
| AoxI | GGCC | 6 cut(s) | 828, 894, 2478, 2588, 2986, 3016 |
| ApaLI | GTGCAC | 1 cut(s) | 246 |
| AsiGI | ACCGGT | 1 cut(s) | 2371 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 645, 840, 2022, 3209 |
| AspLEI | GCGC | 2 cut(s) | 606, 685 |
| AspS9I | GGNCC | 5 cut(s) | 828, 895, 2117, 2557, 2987 |
| AsuHPI | GGTGA | 6 cut(s) | 542, 990, 1486, 1799, 1851, 2083 |
| AsuNHI | GCTAGC | 1 cut(s) | 2581 |
| AvaI | CYCGRG | 1 cut(s) | 201 |
| AvaII | GGWCC | 2 cut(s) | 2117, 2557 |
| BaeGI | GKGCMC | 2 cut(s) | 250, 3006 |
| BanI | GGYRCC | 1 cut(s) | 3001 |
| BanII | GRGCYC | 1 cut(s) | 379 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2367, 2399 |
| BauI | CACGAG | 1 cut(s) | 189 |
| BbrPI | CACGTG | 1 cut(s) | 818 |
| BbsI | GAAGAC | 2 cut(s) | 2015, 2460 |
| Bbv12I | GWGCWC | 2 cut(s) | 250, 379 |
| BceAI | ACGGC | 1 cut(s) | 3003 |
| BciT130I | CCWGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| BciVI | GTATCC | 3 cut(s) | 1229, 1624, 2317 |
| BclI | TGATCA | 2 cut(s) | 1356, 2668 |
| BcoDI | GTCTC | 7 cut(s) | 199, 279, 492, 907, 1165, 2396, 2423 |
| BcuI | ACTAGT | 1 cut(s) | 296 |
| BfaI | CTAG | 7 cut(s) | 9, 297, 362, 506, 2582, 2586, 3039 |
| BfmI | CTRYAG | 2 cut(s) | 1388, 3165 |
| BfrI | CTTAAG | 2 cut(s) | 1498, 1882 |
| BfuI | GTATCC | 3 cut(s) | 1229, 1624, 2317 |
| BglII | AGATCT | 1 cut(s) | 1819 |
| BmcAI | AGTACT | 1 cut(s) | 2526 |
| Bme1390I | CCNGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| Bme18I | GGWCC | 2 cut(s) | 2117, 2557 |
| BmeT110I | CYCGRG | 1 cut(s) | 201 |
| BmgT120I | GGNCC | 5 cut(s) | 828, 895, 2117, 2557, 2987 |
| BmiI | GGNNCC | 2 cut(s) | 3003, 3144 |
| BmrFI | CCNGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| BmrI | ACTGGG | 1 cut(s) | 1259 |
| BmsI | GCATC | 9 cut(s) | 130, 549, 622, 812, 2253, 2303, 2817, 3174, 3264 |
| BmtI | GCTAGC | 1 cut(s) | 2585 |
| BmuI | ACTGGG | 1 cut(s) | 1259 |
| BpiI | GAAGAC | 2 cut(s) | 2015, 2460 |
| BpmI | CTGGAG | 1 cut(s) | 2541 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1093 |
| BpuEI | CTTGAG | 4 cut(s) | 244, 759, 1220, 1610 |
| Bsa29I | ATCGAT | 1 cut(s) | 3216 |
| BsaAI | YACGTR | 1 cut(s) | 818 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1068 |
| BsaJI | CCNNGG | 6 cut(s) | 125, 135, 1845, 2040, 2481, 2731 |
| BsaWI | WCCGGW | 2 cut(s) | 2371, 3050 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 220, 250, 1740, 1770 |
| Bse118I | RCCGGY | 3 cut(s) | 1809, 2371, 2830 |
| Bse1I | ACTGG | 4 cut(s) | 1254, 2120, 2332, 2524 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1068 |
| BseAI | TCCGGA | 1 cut(s) | 3050 |
| BseBI | CCWGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| BseCI | ATCGAT | 1 cut(s) | 3216 |
| BseDI | CCNNGG | 6 cut(s) | 125, 135, 1845, 2040, 2481, 2731 |
| BseGI | GGATG | 6 cut(s) | 145, 175, 1033, 1566, 1702, 2119 |
| BseJI | GATNNNNATC | 1 cut(s) | 1068 |
| BseNI | ACTGG | 4 cut(s) | 1254, 2120, 2332, 2524 |
| BseRI | GAGGAG | 5 cut(s) | 241, 646, 803, 806, 893 |
| BseSI | GKGCMC | 2 cut(s) | 250, 3006 |
| BseX3I | CGGCCG | 1 cut(s) | 3016 |
| BseYI | CCCAGC | 3 cut(s) | 870, 2989, 3251 |
| BsgI | GTGCAG | 1 cut(s) | 831 |
| Bsh1236I | CGCG | 1 cut(s) | 685 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3019 |
| BshFI | GGCC | 6 cut(s) | 830, 896, 2480, 2590, 2988, 3018 |
| BshNI | GGYRCC | 1 cut(s) | 3001 |
| BshTI | ACCGGT | 1 cut(s) | 2371 |
| BshVI | ATCGAT | 1 cut(s) | 3216 |
| BsiEI | CGRYCG | 1 cut(s) | 3019 |
| BsiHKAI | GWGCWC | 2 cut(s) | 250, 379 |
| BsiHKCI | CYCGRG | 1 cut(s) | 201 |
| BsiSI | CCGG | 5 cut(s) | 1810, 2372, 2831, 3015, 3051 |
| BsmAI | GTCTC | 7 cut(s) | 199, 279, 492, 907, 1165, 2396, 2423 |
| BsmI | GAATGC | 2 cut(s) | 465, 2583 |
| BsnI | GGCC | 6 cut(s) | 830, 896, 2480, 2590, 2988, 3018 |
| BsoBI | CYCGRG | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 3 cut(s) | 250, 379, 3006 |
| Bsp13I | TCCGGA | 1 cut(s) | 3050 |
| Bsp1407I | TGTACA | 1 cut(s) | 2089 |
| Bsp19I | CCATGG | 2 cut(s) | 125, 135 |
| BspACI | CCGC | 7 cut(s) | 706, 757, 937, 1112, 1147, 1399, 2333 |
| BspANI | GGCC | 6 cut(s) | 830, 896, 2480, 2590, 2988, 3018 |
| BspDI | ATCGAT | 1 cut(s) | 3216 |
| BspEI | TCCGGA | 1 cut(s) | 3050 |
| BspFNI | CGCG | 1 cut(s) | 685 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 2 cut(s) | 3003, 3144 |
| BspMAI | CTGCAG | 1 cut(s) | 1392 |
| BspOI | GCTAGC | 1 cut(s) | 2585 |
| BspPI | GGATC | 5 cut(s) | 312, 996, 2810, 2958, 3006 |
| BspT107I | GGYRCC | 1 cut(s) | 3001 |
| BspTI | CTTAAG | 2 cut(s) | 1498, 1882 |
| BsrBI | CCGCTC | 1 cut(s) | 706 |
| BsrFI | RCCGGY | 3 cut(s) | 1809, 2371, 2830 |
| BsrGI | TGTACA | 1 cut(s) | 2089 |
| BsrI | ACTGG | 4 cut(s) | 1254, 2120, 2332, 2524 |
| BssAI | RCCGGY | 3 cut(s) | 1809, 2371, 2830 |
| BssECI | CCNNGG | 6 cut(s) | 125, 135, 1845, 2040, 2481, 2731 |
| BssSI | CACGAG | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 4 cut(s) | 125, 135, 2040, 2731 |
| Bst2BI | CACGAG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| Bst4CI | ACNGT | 5 cut(s) | 24, 1714, 2354, 2984, 3026 |
| Bst6I | CTCTTC | 8 cut(s) | 149, 202, 305, 515, 762, 1980, 2301, 3129 |
| BstAFI | CTTAAG | 2 cut(s) | 1498, 1882 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 809, 2219, 2578 |
| BstAUI | TGTACA | 1 cut(s) | 2089 |
| BstBAI | YACGTR | 1 cut(s) | 818 |
| BstDSI | CCRYGG | 2 cut(s) | 125, 135 |
| BstEII | GGTNACC | 1 cut(s) | 1857 |
| BstF5I | GGATG | 6 cut(s) | 145, 175, 1033, 1566, 1702, 2119 |
| BstFNI | CGCG | 1 cut(s) | 685 |
| BstHHI | GCGC | 2 cut(s) | 606, 685 |
| BstMAI | GTCTC | 7 cut(s) | 199, 279, 492, 907, 1165, 2396, 2423 |
| BstMCI | CGRYCG | 1 cut(s) | 3019 |
| BstNI | CCWGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| BstNSI | RCATGY | 2 cut(s) | 335, 467 |
| BstPI | GGTNACC | 1 cut(s) | 1857 |
| BstSCI | CCNGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| BstSFI | CTRYAG | 2 cut(s) | 1388, 3165 |
| BstSLI | GKGCMC | 2 cut(s) | 250, 3006 |
| BstUI | CGCG | 1 cut(s) | 685 |
| BstV2I | GAAGAC | 2 cut(s) | 2015, 2460 |
| BstX2I | RGATCY | 4 cut(s) | 304, 1819, 2963, 3011 |
| BstYI | RGATCY | 4 cut(s) | 304, 1819, 2963, 3011 |
| BstZI | CGGCCG | 1 cut(s) | 3016 |
| Bsu15I | ATCGAT | 1 cut(s) | 3216 |
| BsuI | GTATCC | 3 cut(s) | 1229, 1624, 2317 |
| BsuRI | GGCC | 6 cut(s) | 830, 896, 2480, 2590, 2988, 3018 |
| BsuTUI | ATCGAT | 1 cut(s) | 3216 |
| BtgI | CCRYGG | 2 cut(s) | 125, 135 |
| BtgZI | GCGATG | 2 cut(s) | 1077, 3241 |
| BtsCI | GGATG | 6 cut(s) | 145, 175, 1033, 1566, 1702, 2119 |
| BtsI | GCAGTG | 3 cut(s) | 487, 1964, 3171 |
| BtsIMutI | CAGTG | 7 cut(s) | 487, 1247, 1964, 2304, 2818, 2989, 3171 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2165, 3173 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 2 cut(s) | 606, 685 |
| Cfr10I | RCCGGY | 3 cut(s) | 1809, 2371, 2830 |
| Cfr13I | GGNCC | 5 cut(s) | 828, 895, 2117, 2557, 2987 |
| ClaI | ATCGAT | 1 cut(s) | 3216 |
| CseI | GACGC | 1 cut(s) | 728 |
| Csp6I | GTAC | 6 cut(s) | 1952, 2090, 2105, 2525, 2907, 3027 |
| CspAI | ACCGGT | 1 cut(s) | 2371 |
| CviAII | CATG | 8 cut(s) | 126, 136, 260, 332, 464, 617, 2569, 3079 |
| CviQI | GTAC | 6 cut(s) | 1952, 2090, 2105, 2525, 2907, 3027 |
| DraI | TTTAAA | 2 cut(s) | 1020, 1491 |
| DraIII | CACNNNGTG | 1 cut(s) | 2320 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 67 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 67 |
| EaeI | YGGCCR | 1 cut(s) | 3016 |
| EagI | CGGCCG | 1 cut(s) | 3016 |
| Eam1104I | CTCTTC | 8 cut(s) | 149, 202, 305, 515, 762, 1980, 2301, 3129 |
| EarI | CTCTTC | 8 cut(s) | 149, 202, 305, 515, 762, 1980, 2301, 3129 |
| Ecl136II | GAGCTC | 1 cut(s) | 377 |
| EclXI | CGGCCG | 1 cut(s) | 3016 |
| Eco130I | CCWWGG | 4 cut(s) | 125, 135, 2040, 2731 |
| Eco147I | AGGCCT | 2 cut(s) | 2480, 2590 |
| Eco24I | GRGCYC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 2 cut(s) | 2117, 2557 |
| Eco52I | CGGCCG | 1 cut(s) | 3016 |
| Eco53kI | GAGCTC | 1 cut(s) | 377 |
| Eco57I | CTGAAG | 5 cut(s) | 329, 1482, 2549, 2794, 3051 |
| Eco72I | CACGTG | 1 cut(s) | 818 |
| Eco88I | CYCGRG | 1 cut(s) | 201 |
| Eco91I | GGTNACC | 1 cut(s) | 1857 |
| EcoICRI | GAGCTC | 1 cut(s) | 377 |
| EcoO65I | GGTNACC | 1 cut(s) | 1857 |
| EcoRI | GAATTC | 1 cut(s) | 115 |
| EcoRII | CCWGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| EcoT14I | CCWWGG | 4 cut(s) | 125, 135, 2040, 2731 |
| EcoT22I | ATGCAT | 1 cut(s) | 465 |
| EcoT38I | GRGCYC | 1 cut(s) | 379 |
| ErhI | CCWWGG | 4 cut(s) | 125, 135, 2040, 2731 |
| FaeI | CATG | 8 cut(s) | 129, 139, 263, 335, 467, 620, 2572, 3082 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1090, 1122, 2733, 2765 |
| FatI | CATG | 8 cut(s) | 125, 135, 259, 331, 463, 616, 2568, 3078 |
| FauI | CCCGC | 1 cut(s) | 1406 |
| FbaI | TGATCA | 2 cut(s) | 1356, 2668 |
| FokI | GGATG | 6 cut(s) | 152, 182, 1040, 1553, 1709, 2126 |
| FriOI | GRGCYC | 1 cut(s) | 379 |
| FspBI | CTAG | 7 cut(s) | 9, 297, 362, 506, 2582, 2586, 3039 |
| GlaI | GCGC | 2 cut(s) | 605, 684 |
| GsaI | CCCAGC | 3 cut(s) | 874, 2993, 3255 |
| GsuI | CTGGAG | 1 cut(s) | 2541 |
| HaeIII | GGCC | 6 cut(s) | 830, 896, 2480, 2590, 2988, 3018 |
| HapII | CCGG | 5 cut(s) | 1810, 2372, 2831, 3015, 3051 |
| HgaI | GACGC | 1 cut(s) | 728 |
| HhaI | GCGC | 2 cut(s) | 606, 685 |
| Hin1II | CATG | 8 cut(s) | 129, 139, 263, 335, 467, 620, 2572, 3082 |
| Hin6I | GCGC | 2 cut(s) | 604, 683 |
| HinP1I | GCGC | 2 cut(s) | 604, 683 |
| HincII | GTYRAC | 4 cut(s) | 27, 60, 2350, 2433 |
| HindII | GTYRAC | 4 cut(s) | 27, 60, 2350, 2433 |
| HindIII | AAGCTT | 1 cut(s) | 383 |
| HpaI | GTTAAC | 1 cut(s) | 2350 |
| HpaII | CCGG | 5 cut(s) | 1810, 2372, 2831, 3015, 3051 |
| HphI | GGTGA | 6 cut(s) | 542, 990, 1486, 1799, 1851, 2083 |
| Hpy166II | GTNNAC | 5 cut(s) | 27, 60, 248, 2350, 2433 |
| Hpy8I | GTNNAC | 5 cut(s) | 27, 60, 248, 2350, 2433 |
| Hpy99I | CGWCG | 1 cut(s) | 1014 |
| HpyCH4III | ACNGT | 5 cut(s) | 24, 1714, 2354, 2984, 3026 |
| HpyCH4IV | ACGT | 3 cut(s) | 817, 1009, 2946 |
| HpySE526I | ACGT | 3 cut(s) | 817, 1009, 2946 |
| Hsp92II | CATG | 8 cut(s) | 129, 139, 263, 335, 467, 620, 2572, 3082 |
| HspAI | GCGC | 2 cut(s) | 604, 683 |
| Kpn2I | TCCGGA | 1 cut(s) | 3050 |
| Ksp22I | TGATCA | 2 cut(s) | 1356, 2668 |
| KspAI | GTTAAC | 1 cut(s) | 2350 |
| LmnI | GCTCC | 6 cut(s) | 127, 793, 1378, 1761, 1780, 3148 |
| LweI | GCATC | 9 cut(s) | 130, 549, 622, 812, 2253, 2303, 2817, 3174, 3264 |
| MaeI | CTAG | 7 cut(s) | 9, 297, 362, 506, 2582, 2586, 3039 |
| MaeII | ACGT | 3 cut(s) | 817, 1009, 2946 |
| MaeIII | GTNAC | 7 cut(s) | 447, 1474, 1714, 1730, 1857, 2928, 3020 |
| MbiI | CCGCTC | 1 cut(s) | 706 |
| MflI | RGATCY | 4 cut(s) | 304, 1819, 2963, 3011 |
| MhlI | GDGCHC | 3 cut(s) | 250, 379, 3006 |
| MlyI | GAGTC | 4 cut(s) | 494, 1293, 2165, 2773 |
| MmeI | TCCRAC | 4 cut(s) | 1327, 1674, 1758, 2958 |
| Mph1103I | ATGCAT | 1 cut(s) | 465 |
| MroI | TCCGGA | 1 cut(s) | 3050 |
| MroXI | GAANNNNTTC | 4 cut(s) | 645, 840, 2022, 3209 |
| MslI | CAYNNNNRTG | 3 cut(s) | 336, 1571, 2343 |
| MspA1I | CMGCKG | 2 cut(s) | 757, 2393 |
| MspCI | CTTAAG | 2 cut(s) | 1498, 1882 |
| MspI | CCGG | 5 cut(s) | 1810, 2372, 2831, 3015, 3051 |
| MspR9I | CCNGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| Mva1269I | GAATGC | 2 cut(s) | 465, 2583 |
| MvaI | CCWGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| MvnI | CGCG | 1 cut(s) | 685 |
| NcoI | CCATGG | 2 cut(s) | 125, 135 |
| NheI | GCTAGC | 1 cut(s) | 2581 |
| NlaIII | CATG | 8 cut(s) | 129, 139, 263, 335, 467, 620, 2572, 3082 |
| NlaIV | GGNNCC | 2 cut(s) | 3003, 3144 |
| NmuCI | GTSAC | 3 cut(s) | 1474, 1730, 1857 |
| NsiI | ATGCAT | 1 cut(s) | 465 |
| NspI | RCATGY | 2 cut(s) | 335, 467 |
| PaeI | GCATGC | 2 cut(s) | 335, 467 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PceI | AGGCCT | 2 cut(s) | 2480, 2590 |
| PctI | GAATGC | 2 cut(s) | 465, 2583 |
| PdmI | GAANNNNTTC | 4 cut(s) | 645, 840, 2022, 3209 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 904, 2114, 2652 |
| PinAI | ACCGGT | 1 cut(s) | 2371 |
| PleI | GAGTC | 4 cut(s) | 493, 1293, 2164, 2772 |
| PmaCI | CACGTG | 1 cut(s) | 818 |
| PmlI | CACGTG | 1 cut(s) | 818 |
| PpsI | GAGTC | 4 cut(s) | 493, 1293, 2164, 2772 |
| Ppu21I | YACGTR | 1 cut(s) | 818 |
| Psp124BI | GAGCTC | 1 cut(s) | 379 |
| Psp6I | CCWGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| PspCI | CACGTG | 1 cut(s) | 818 |
| PspEI | GGTNACC | 1 cut(s) | 1857 |
| PspFI | CCCAGC | 3 cut(s) | 870, 2989, 3251 |
| PspGI | CCWGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| PspN4I | GGNNCC | 2 cut(s) | 3003, 3144 |
| PspPI | GGNCC | 5 cut(s) | 828, 895, 2117, 2557, 2987 |
| PstI | CTGCAG | 1 cut(s) | 1392 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2165, 3173 |
| PsuI | RGATCY | 4 cut(s) | 304, 1819, 2963, 3011 |
| PvuII | CAGCTG | 1 cut(s) | 2393 |
| RsaI | GTAC | 6 cut(s) | 1953, 2091, 2106, 2526, 2908, 3028 |
| RsaNI | GTAC | 6 cut(s) | 1952, 2090, 2105, 2525, 2907, 3027 |
| RseI | CAYNNNNRTG | 3 cut(s) | 336, 1571, 2343 |
| SacI | GAGCTC | 1 cut(s) | 379 |
| Sau96I | GGNCC | 5 cut(s) | 828, 895, 2117, 2557, 2987 |
| ScaI | AGTACT | 1 cut(s) | 2526 |
| SchI | GAGTC | 4 cut(s) | 494, 1293, 2165, 2773 |
| ScrFI | CCNGG | 5 cut(s) | 219, 950, 1472, 1847, 1915 |
| SduI | GDGCHC | 3 cut(s) | 250, 379, 3006 |
| SfaNI | GCATC | 9 cut(s) | 130, 549, 622, 812, 2253, 2303, 2817, 3174, 3264 |
| SfcI | CTRYAG | 2 cut(s) | 1388, 3165 |
| SinI | GGWCC | 2 cut(s) | 2117, 2557 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 336, 1571, 2343 |
| SmlI | CTYRAG | 6 cut(s) | 223, 774, 1199, 1498, 1589, 1882 |
| SmoI | CTYRAG | 6 cut(s) | 223, 774, 1199, 1498, 1589, 1882 |
| SpeI | ACTAGT | 1 cut(s) | 296 |
| SphI | GCATGC | 2 cut(s) | 335, 467 |
| SseBI | AGGCCT | 2 cut(s) | 2480, 2590 |
| SsiI | CCGC | 7 cut(s) | 706, 757, 937, 1112, 1147, 1399, 2333 |
| SspMI | CTAG | 7 cut(s) | 9, 297, 362, 506, 2582, 2586, 3039 |
| SstI | GAGCTC | 1 cut(s) | 379 |
| StuI | AGGCCT | 2 cut(s) | 2480, 2590 |
| StyD4I | CCNGG | 5 cut(s) | 217, 948, 1470, 1845, 1913 |
| StyI | CCWWGG | 4 cut(s) | 125, 135, 2040, 2731 |
| TaaI | ACNGT | 5 cut(s) | 24, 1714, 2354, 2984, 3026 |
| TaiI | ACGT | 3 cut(s) | 820, 1012, 2949 |
| TaqI | TCGA | 6 cut(s) | 490, 834, 1012, 1165, 1840, 3216 |
| TatI | WGTACW | 3 cut(s) | 2089, 2524, 2906 |
| TauI | GCSGC | 1 cut(s) | 939 |
| TscAI | CASTG | 7 cut(s) | 487, 1254, 1971, 2304, 2818, 2989, 3178 |
| TseFI | GTSAC | 3 cut(s) | 1474, 1730, 1857 |
| Tsp45I | GTSAC | 3 cut(s) | 1474, 1730, 1857 |
| TspRI | CASTG | 7 cut(s) | 487, 1254, 1971, 2304, 2818, 2989, 3178 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 904, 2114, 2652 |
| Vha464I | CTTAAG | 2 cut(s) | 1498, 1882 |
| VneI | GTGCAC | 1 cut(s) | 246 |
| VpaK11BI | GGWCC | 2 cut(s) | 2117, 2557 |
| XceI | RCATGY | 2 cut(s) | 335, 467 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2974 |
| XmnI | GAANNNNTTC | 4 cut(s) | 645, 840, 2022, 3209 |
| XspI | CTAG | 7 cut(s) | 9, 297, 362, 506, 2582, 2586, 3039 |
| ZrmI | AGTACT | 1 cut(s) | 2526 |
| Zsp2I | ATGCAT | 1 cut(s) | 465 |