Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006932

Physical Location & Seq

Genomic Coordinates Forward (+)

57810280 .. 57811327

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0447700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTGTCTGGTGTTCGTTTGTGATGAGGATGAGACGGTTCTCTCGCGGCAACCAGCACCGGGGGCGTGCCCGTACTGTGGAGGTTTGGTTCAAGCCATGGATGTAGAGAAACAGTGGAGGTTCTGTTTCTTCCCTCTCTATTGGAGGACCAAGCGCAAGCTCTACTGCAGCTTCTGTGCTAGACGCTTGGTAGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAPER_N

Protein Analysis

66

Amino Acids

7.76

Weight (kDa)

8.55

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006932)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340 FvH4_5g14340
malus_domestica	MD14G1208500.v1.1
prunus_persica	Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1 Prupe.5G200400_v2.0.a1
pyrus_communis	pycom14g17210
rosa_chinensis	RchiOBHm_Chr7g0182421
rosa_laevigata	RLG00000005124
rosa_multiflora	Rmu_sc0034215.1_g000002 Rmu_sc0034215.1_g000003 Rmu_ssc0000376.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271260
rosa_rugosa	Rorug06G0447500 Rorug06G0447600 Rorug06G0447700
rosa_samantha	Rh7AG051000 Rh7BG050500 Rh7CG052100 Rh7DG049800
rosa_wichuraiana	Rw7G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	1 cut(s)	46
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	59, 77
AgsI	TTSAA	1 cut(s)	92
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	2 cut(s)	160, 171
AluI	AGCT	2 cut(s)	160, 171
Alw26I	GTCTC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	47, 169
BlsI	GCNGC	2 cut(s)	48, 170
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	59, 96
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 77
BseDI	CCNNGG	2 cut(s)	59, 96
BseGI	GGATG	2 cut(s)	34, 106
BseLI	CCNNNNNNNGG	2 cut(s)	59, 77
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	59, 77
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	59, 96
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	3 cut(s)	37, 77, 114
BstC8I	GCNNGC	2 cut(s)	67, 158
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	34, 106
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	34, 106
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	67, 158
CaiI	CAGNNNCTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	95, 160, 171
CviKI_1	RGCY	3 cut(s)	95, 160, 171
CviQI	GTAC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	47, 169
FokI	GGATG	2 cut(s)	41, 113
Fsp4HI	GCNGC	2 cut(s)	47, 169
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	47, 169
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	59
HpyCH4III	ACNGT	3 cut(s)	37, 77, 114
HpyCH4V	TGCA	2 cut(s)	168, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	66, 72
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	180
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	19, 74, 111, 138, 144
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	96
NlaIII	CATG	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	48, 170
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SatI	GCNGC	2 cut(s)	47, 169
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	4 cut(s)	85, 122, 162, 173
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	147
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	37, 77, 114
TauI	GCSGC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	168
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	147
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.