pycom14g17820

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003696
Physical Location & Seq
Reverse (-)
19634624 .. 19637062
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1500 bp
ATGGAATCTTGGAGCTGTATTTCTGAAGGGAAAGGGTTTGTTGTATCAGATGGAACAATTTCACATACTGATTCACTTTCTAGAAGTAGAAATGGTTTGATGGGTTGGGAATTGAAAACCCCTTGTACTTTTATGGAAAGTCAAGGTTTTGGGGAGTTGGGTTTTCCAGAAATGGTCGGCAAACATTTGCAGAGTGATTCAATTAGAGATGCAGTGAGCACAAGTATGTCCACCCCGAATTTATTTTTCGGTGAAGACAAATCCTCTTCGAGGATTTCGAGCTCCATTGTGGACTCCAGCAGTAGGGATTGTTCACTCATTGACTTAAAACTAGGGAGATTGGCTGATCACAGAGATGTTCATAGCGCTAAATTGTCTAAAGGAACTCCCATGTTGTCTTCATCTGGATCATCAACACCCCCTAAGCGAATGCGCGTTTTGGGTGTGTATCCTCGGCCTGCCTACTGCCAGGTTTATGGTTGCAACAAGGATCTTAGCTCCTATAAGGACTACCACAAGAGGCATAAGGTTTGCGAGGTTCACGCGAAGACTGCAAAAGTTATTGTCAACGGCGTAGAACAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGTTGGGTGAATTTGATGATGGTAAGCGTAGCTGTCGTAGGCGCCTTGCAGGACACAACGAGCGGCGGAGAAAGCCTCAGATAGGGAGTCATCCTGGAAGAGCTGGGAGGTTCCCTCAGTCATTTGATGGTGGCAGATTTGAAGGGAATATGTTAACAACTGCATCTTTTATCTGCCAAGAGATACTCCCTACTGACATTCCTGAGAAATATGGAACGGGTGACTGGTGCAGGCACATAAAAGTTGAAGGCGGGACTCATTATAGGCCTTTGTCGGGGATGCCTGTTACAAATGGGCATCTGCATTCAAAACCTGTCTTCCCTTCTTACGATATTGGCAAACAGTATCCCTCATTTCATGAAAACGGTACTAATCCTTTAACTGCAAGCGTATTCAGTCAGAATGGTAGTCAATATCCACAAGACATGAGAGGCCTAAGTTCCAGTTCACATTCTATTTTTCATGAGATCGCATTAGGAAGTCAAGATTTCAATGTTTTCAACCCAACTTCAGCAGTTCCACGATTATCAGGAATCTCAGACTCTGGCTGTGCTCGCTCTCTTCTGTCATCTCAATCACAGAACTCTTCAAGCTATTCGTCAGGAATTCCTTTCGCACGCCCCTTAGTCATACCAGCCAGCCGTAAATTCCCTTCTTCAGGAATGAATTCTGGAGCTAGGAGTCACCTGAGTCCCATACTGCCATCTAATGATTGTGATGACACCAATGATTTTGGAATCTCAGATGAGATCATCCAAGGATCAGGTTTTGCAAACACCAAAGATCGTCTACCCTGTCAAGATGGAGCCACTATCGACTTGCTTCAACTGTCATCACAGCTCCAACAAGTAGAGGATCAACGGCAATCCATGCAGGCGAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

500

Amino Acids

54.74

Weight (kDa)

8.68

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 156 - 229 1.7e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 654
AccBSI CCGCTC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 1402
AccII CGCG 2 cut(s) 435, 545
AciI CCGC 3 cut(s) 676, 679, 864
AclWI GGATC 4 cut(s) 415, 498, 1381, 1476
AcsI RAATTY 5 cut(s) 238, 623, 1218, 1259, 1279
AcuI CTGAAG 3 cut(s) 45, 1107, 1254
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 2 cut(s) 127, 982
AfeI AGCGCT 1 cut(s) 367
AfiI CCNNNNNNNGG 5 cut(s) 270, 303, 695, 887, 1271
AgsI TTSAA 9 cut(s) 115, 201, 755, 860, 921, 1105, 1114, 1203, 1439
AjnI CCWGG 2 cut(s) 468, 706
AluBI AGCT 8 cut(s) 15, 282, 498, 645, 716, 1206, 1289, 1453
AluI AGCT 8 cut(s) 15, 282, 498, 645, 716, 1206, 1289, 1453
Alw21I GWGCWC 3 cut(s) 221, 284, 1168
AlwI GGATC 4 cut(s) 415, 498, 1381, 1476
AlwNI CAGNNNCTG 1 cut(s) 1157
Aor51HI AGCGCT 1 cut(s) 367
AoxI GGCC 3 cut(s) 455, 878, 1045
ApoI RAATTY 5 cut(s) 238, 623, 1218, 1259, 1279
Asp700I GAANNNNTTC 2 cut(s) 58, 1279
AspLEI GCGC 3 cut(s) 368, 435, 657
AsuHPI GGTGA 4 cut(s) 263, 632, 845, 1289
BanI GGYRCC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 1249, 1281
BbsI GAAGAC 4 cut(s) 261, 390, 554, 922
Bbv12I GWGCWC 3 cut(s) 221, 284, 1168
BccI CCATC 6 cut(s) 44, 94, 626, 734, 1324, 1409
BceAI ACGGC 3 cut(s) 586, 1239, 1490
BciT130I CCWGG 2 cut(s) 470, 708
BciVI GTATCC 2 cut(s) 459, 969
BclI TGATCA 1 cut(s) 346
BfaI CTAG 3 cut(s) 81, 332, 1290
BfoI RGCGCY 2 cut(s) 369, 658
BfuAI ACCTGC 1 cut(s) 594
BfuI GTATCC 2 cut(s) 459, 969
BisI GCNGC 1 cut(s) 677
BlsI GCNGC 1 cut(s) 678
Bme1390I CCNGG 2 cut(s) 470, 708
BmiI GGNNCC 3 cut(s) 656, 725, 1420
BmrFI CCNGG 2 cut(s) 470, 708
BmsI GCATC 4 cut(s) 199, 785, 882, 919
BpiI GAAGAC 4 cut(s) 261, 390, 554, 922
BplI GAGNNNNNCTC 4 cut(s) 673, 705, 712, 744
BpmI CTGGAG 2 cut(s) 280, 1305
Bpu10I CCTNAGC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 655
BsaJI CCNNGG 2 cut(s) 452, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 270, 303, 695, 887, 1271
Bse1I ACTGG 2 cut(s) 842, 1056
BseBI CCWGG 2 cut(s) 470, 708
BseDI CCNNGG 2 cut(s) 452, 1369
BseGI GGATG 3 cut(s) 703, 897, 1365
BseLI CCNNNNNNNGG 5 cut(s) 270, 303, 695, 887, 1271
BseMII CTCAG 6 cut(s) 704, 743, 807, 1164, 1292, 1368
BseNI ACTGG 2 cut(s) 842, 1056
BseYI CCCAGC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 862
Bsh1236I CGCG 2 cut(s) 435, 545
BshFI GGCC 3 cut(s) 457, 880, 1047
BshNI GGYRCC 1 cut(s) 654
BsiHKAI GWGCWC 3 cut(s) 221, 284, 1168
BslFI GGGAC 2 cut(s) 880, 1290
BslI CCNNNNNNNGG 5 cut(s) 270, 303, 695, 887, 1271
BsmFI GGGAC 2 cut(s) 880, 1290
BsmI GAATGC 2 cut(s) 435, 916
BsnI GGCC 3 cut(s) 457, 880, 1047
Bsp1286I GDGCHC 3 cut(s) 221, 284, 1168
Bsp143I GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
BspACI CCGC 3 cut(s) 676, 679, 864
BspANI GGCC 3 cut(s) 457, 880, 1047
BspCNI CTCAG 6 cut(s) 703, 742, 808, 1163, 1293, 1367
BspFNI CGCG 2 cut(s) 435, 545
BspHI TCATGA 2 cut(s) 970, 1075
BspLI GGNNCC 3 cut(s) 656, 725, 1420
BspMI ACCTGC 1 cut(s) 594
BspPI GGATC 4 cut(s) 415, 498, 1381, 1476
BspQI GCTCTTC 1 cut(s) 706
BspT107I GGYRCC 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 676
BsrI ACTGG 2 cut(s) 842, 1056
BssECI CCNNGG 2 cut(s) 452, 1369
BssMI GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 1369
Bst2UI CCWGG 2 cut(s) 470, 708
Bst4CI ACNGT 3 cut(s) 957, 980, 1443
Bst6I CTCTTC 4 cut(s) 271, 706, 1179, 1204
BstACI GRCGYC 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 1483
BstC8I GCNNGC 7 cut(s) 459, 845, 1000, 1168, 1231, 1252, 1488
BstENI CCTNNNNNAGG 3 cut(s) 268, 693, 1269
BstF5I GGATG 3 cut(s) 703, 897, 1365
BstFNI CGCG 2 cut(s) 435, 545
BstH2I RGCGCY 2 cut(s) 369, 658
BstHHI GCGC 3 cut(s) 368, 435, 657
BstKTI GATC 8 cut(s) 349, 410, 493, 1083, 1365, 1376, 1399, 1471
BstMBI GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
BstMWI GCNNNNNNNGC 5 cut(s) 551, 685, 1167, 1483, 1492
BstNI CCWGG 2 cut(s) 470, 708
BstSCI CCNGG 2 cut(s) 468, 706
BstUI CGCG 2 cut(s) 435, 545
BstV2I GAAGAC 4 cut(s) 261, 390, 554, 922
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 2 cut(s) 459, 969
BsuRI GGCC 3 cut(s) 457, 880, 1047
BtsCI GGATG 3 cut(s) 703, 897, 1365
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 7 cut(s) 459, 845, 1000, 1168, 1231, 1252, 1488
CaiI CAGNNNCTG 1 cut(s) 1157
CciI TCATGA 2 cut(s) 970, 1075
CfoI GCGC 3 cut(s) 368, 435, 657
Csp6I GTAC 2 cut(s) 126, 981
CviAII CATG 5 cut(s) 391, 971, 1039, 1076, 1483
CviQI GTAC 2 cut(s) 126, 981
DinI GGCGCC 1 cut(s) 656
DpnI GATC 8 cut(s) 348, 409, 492, 1082, 1364, 1375, 1398, 1470
DpnII GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
Eam1104I CTCTTC 4 cut(s) 271, 706, 1179, 1204
EarI CTCTTC 4 cut(s) 271, 706, 1179, 1204
EciI GGCGGA 1 cut(s) 694
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 1369
Eco147I AGGCCT 2 cut(s) 880, 1047
Eco24I GRGCYC 1 cut(s) 284
Eco47III AGCGCT 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 282
Eco57I CTGAAG 3 cut(s) 45, 1107, 1254
EcoICRI GAGCTC 1 cut(s) 282
EcoNI CCTNNNNNAGG 3 cut(s) 268, 693, 1269
EcoRI GAATTC 2 cut(s) 1218, 1279
EcoRII CCWGG 2 cut(s) 468, 706
EcoT14I CCWWGG 1 cut(s) 1369
EcoT38I GRGCYC 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 656
EheI GGCGCC 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 1369
FaeI CATG 5 cut(s) 394, 974, 1042, 1079, 1486
FaqI GGGAC 2 cut(s) 880, 1290
FatI CATG 5 cut(s) 390, 970, 1038, 1075, 1482
FauI CCCGC 1 cut(s) 857
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 1402
Fnu4HI GCNGC 1 cut(s) 677
FokI GGATG 3 cut(s) 690, 904, 1352
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 677
FspBI CTAG 3 cut(s) 81, 332, 1290
GlaI GCGC 3 cut(s) 367, 434, 656
GluI GCNGC 1 cut(s) 677
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 2 cut(s) 280, 1305
HaeII RGCGCY 2 cut(s) 369, 658
HaeIII GGCC 3 cut(s) 457, 880, 1047
HhaI GCGC 3 cut(s) 368, 435, 657
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 5 cut(s) 394, 974, 1042, 1079, 1486
Hin6I GCGC 3 cut(s) 366, 433, 655
HinP1I GCGC 3 cut(s) 366, 433, 655
HincII GTYRAC 3 cut(s) 568, 593, 768
HindII GTYRAC 3 cut(s) 568, 593, 768
HpaI GTTAAC 1 cut(s) 768
HphI GGTGA 4 cut(s) 263, 632, 845, 1289
Hpy166II GTNNAC 9 cut(s) 231, 292, 314, 541, 568, 593, 768, 1061, 1403
Hpy188I TCNGA 6 cut(s) 25, 49, 693, 1014, 1153, 1357
Hpy8I GTNNAC 9 cut(s) 231, 292, 314, 541, 568, 593, 768, 1061, 1403
HpyAV CCTTC 5 cut(s) 20, 749, 854, 945, 1275
HpyCH4III ACNGT 3 cut(s) 957, 980, 1443
HpyF10VI GCNNNNNNNGC 5 cut(s) 551, 685, 1167, 1483, 1492
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 5 cut(s) 394, 974, 1042, 1079, 1486
HspAI GCGC 3 cut(s) 366, 433, 655
KasI GGCGCC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 768
Kzo9I GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 6 cut(s) 12, 287, 503, 1286, 1418, 1458
LweI GCATC 4 cut(s) 199, 785, 882, 919
MaeI CTAG 3 cut(s) 81, 332, 1290
MaeIII GTNAC 3 cut(s) 833, 898, 1295
MalI GATC 8 cut(s) 348, 409, 492, 1082, 1364, 1375, 1398, 1470
MbiI CCGCTC 1 cut(s) 676
MboI GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
MboII GAAGA 9 cut(s) 258, 266, 390, 559, 723, 922, 1166, 1191, 1260
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 3 cut(s) 221, 284, 1168
MluCI AATT 9 cut(s) 57, 110, 201, 238, 371, 623, 1218, 1259, 1279
Mly113I GGCGCC 1 cut(s) 655
MlyI GAGTC 6 cut(s) 287, 709, 862, 1148, 1303, 1312
MmeI TCCRAC 1 cut(s) 1480
MroXI GAANNNNTTC 2 cut(s) 58, 1279
MseI TTAA 3 cut(s) 326, 767, 992
MslI CAYNNNNRTG 2 cut(s) 224, 354
MspR9I CCNGG 2 cut(s) 470, 708
Mva1269I GAATGC 2 cut(s) 435, 916
MvaI CCWGG 2 cut(s) 470, 708
MvnI CGCG 2 cut(s) 435, 545
MwoI GCNNNNNNNGC 5 cut(s) 551, 685, 1167, 1483, 1492
NarI GGCGCC 1 cut(s) 655
NdeII GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
NlaIII CATG 5 cut(s) 394, 974, 1042, 1079, 1486
NlaIV GGNNCC 3 cut(s) 656, 725, 1420
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 833, 1295
PagI TCATGA 2 cut(s) 970, 1075
PceI AGGCCT 2 cut(s) 880, 1047
PciSI GCTCTTC 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 2 cut(s) 435, 916
PdmI GAANNNNTTC 2 cut(s) 58, 1279
PfeI GAWTC 5 cut(s) 5, 71, 197, 1146, 1350
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 1 cut(s) 678
PleI GAGTC 6 cut(s) 287, 708, 862, 1148, 1302, 1311
PluTI GGCGCC 1 cut(s) 658
PpsI GAGTC 6 cut(s) 287, 708, 862, 1148, 1302, 1311
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 468, 706
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 468, 706
PspN4I GGNNCC 3 cut(s) 656, 725, 1420
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PstNI CAGNNNCTG 1 cut(s) 1157
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 2 cut(s) 127, 982
RsaNI GTAC 2 cut(s) 126, 981
RseI CAYNNNNRTG 2 cut(s) 224, 354
SacI GAGCTC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 3 cut(s) 326, 767, 992
SatI GCNGC 1 cut(s) 677
Sau3AI GATC 8 cut(s) 346, 407, 490, 1080, 1362, 1373, 1396, 1468
SchI GAGTC 6 cut(s) 287, 709, 862, 1148, 1303, 1312
ScrFI CCNGG 2 cut(s) 470, 708
SduI GDGCHC 3 cut(s) 221, 284, 1168
SfaNI GCATC 4 cut(s) 199, 785, 882, 919
SfoI GGCGCC 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 224, 354
Sse9I AATT 9 cut(s) 57, 110, 201, 238, 371, 623, 1218, 1259, 1279
SseBI AGGCCT 2 cut(s) 880, 1047
SsiI CCGC 3 cut(s) 676, 679, 864
SspDI GGCGCC 1 cut(s) 654
SspMI CTAG 3 cut(s) 81, 332, 1290
SstI GAGCTC 1 cut(s) 284
StuI AGGCCT 2 cut(s) 880, 1047
StyD4I CCNGG 2 cut(s) 468, 706
StyI CCWWGG 1 cut(s) 1369
TaaI ACNGT 3 cut(s) 957, 980, 1443
TaqI TCGA 3 cut(s) 269, 278, 1428
TasI AATT 9 cut(s) 57, 110, 201, 238, 371, 623, 1218, 1259, 1279
TatI WGTACW 1 cut(s) 125
TauI GCSGC 1 cut(s) 679
TfiI GAWTC 5 cut(s) 5, 71, 197, 1146, 1350
Tru1I TTAA 3 cut(s) 326, 767, 992
Tru9I TTAA 3 cut(s) 326, 767, 992
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 833, 1295
Tsp45I GTSAC 2 cut(s) 833, 1295
TspDTI ATGAA 7 cut(s) 350, 390, 599, 959, 987, 1064, 1292
TspRI CASTG 1 cut(s) 219
XagI CCTNNNNNAGG 3 cut(s) 268, 693, 1269
XapI RAATTY 5 cut(s) 238, 623, 1218, 1259, 1279
XbaI TCTAGA 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 1402
XmnI GAANNNNTTC 2 cut(s) 58, 1279
XspI CTAG 3 cut(s) 81, 332, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.