Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

25890 .. 28738

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACTATATCAGAGGATGAGGACGAGAGTTTGGCTCATTTCCTTGAATCGGAGGTGCTCTCCGAGGTTTCAGAAGACAAGGAGGAGGAGGAGGAGGATGATGAGGTAACAGAGGAGCCCAAAGCAAAGAAAATGCGACTAGTGGACGATACGGCTGAGAAAGACCCTCAATTTCAGAAAAGCGCATCTTCTTCCGGGTTTGTTCAGTCAAAAAGCGCCATCGGCTGCAGTAGCAATAGCGGGAACTCGCCCGTGAGGATTGAAACTGGCATTTTCAGCAAAATCCCTCCTGAACTCTTCCCTCACATCCTCAAGTTCCTCTCTTCTGAAGATCTATTTGCTTGCTCTCTCGTCTGTAGATTTCTAAGTCATGTCGCTTCCGATGAATCCTTATGGCGCCGCCTGTACTGTATGCGATGGGGTCATTTACCCCCTAGTAGAAAGCTGCGTGAATGTCCATGGAAAAAACTTTATATTCAGCGTGATGAGGAGGATACGGTGGAACTTGTTAGGAATTGCACACTTGAGTTCAAGGAATATTTTATTCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGTGAATGATGACATAATTCTTGACACAACAGTAGCTGATCAAGTGTCTATATGGAAAAGTAGAAGAGGCCTAACTGATAAGGCGGAAGCTGATCATGCTTGTTCAGGTGAAAAGTGCACTTACTACCAAATTGGAGATGTATTTGTCTGTGAGAACACTGGCCAGGTTCATGTATGTGATGATAATTGCAGAGAAGTTGTTATGGATCCGACCAATGAGCTTTGGGTCTGCACAATATCTGGGCACTGTTTCGATAGGCTGCTATCACCAGAAGAAACGGAGTCAGATGCTGAGCAGCAGCAAGGAGCTGTGACAGACGAGGCAGAACCATTCATGGGATCTGGGCGCTTTGCAAGAGCTTATATGATGGGATATAATTGTGTTGATGAGAAGGAGCTAGAGGATGCTTTGAGGTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

338

Amino Acids

38.31

Weight (kDa)

4.55

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	92 - 133	1.5e-07	F-box domain
F-box-like	PF12937	93 - 137	3.3e-13	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	3 cut(s)	240, 400, 674
AclWI	GGATC	3 cut(s)	791, 804, 937
AcoI	YGGCCR	1 cut(s)	751
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	49, 926
AgsI	TTSAA	4 cut(s)	47, 263, 532, 548
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	753
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	8 cut(s)	445, 557, 626, 680, 811, 899, 950, 988
AluI	AGCT	8 cut(s)	445, 557, 626, 680, 811, 899, 950, 988
Alw21I	GWGCWC	2 cut(s)	60, 710
Alw44I	GTGCAC	1 cut(s)	706
AlwI	GGATC	3 cut(s)	791, 804, 937
AlwNI	CAGNNNCTG	2 cut(s)	626, 881
AoxI	GGCC	2 cut(s)	658, 751
ApaLI	GTGCAC	1 cut(s)	706
ApeKI	GCWGC	6 cut(s)	225, 445, 557, 850, 886, 889
AspLEI	GCGC	4 cut(s)	185, 218, 399, 939
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	604, 710, 849
BaeGI	GKGCMC	2 cut(s)	710, 837
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	60, 710
BbvI	GCAGC	6 cut(s)	212, 432, 544, 837, 898, 901
BccI	CCATC	3 cut(s)	227, 411, 952
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	755
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	628, 682
BcnI	CCSGG	1 cut(s)	196
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	3 cut(s)	140, 435, 989
BfmI	CTRYAG	2 cut(s)	226, 355
BfoI	RGCGCY	3 cut(s)	219, 400, 940
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	7 cut(s)	226, 400, 446, 558, 851, 887, 890
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	7 cut(s)	227, 401, 447, 559, 852, 888, 891
Bme1390I	CCNGG	2 cut(s)	196, 755
BmiI	GGNNCC	3 cut(s)	117, 398, 798
BmrFI	CCNGG	2 cut(s)	196, 755
BmsI	GCATC	3 cut(s)	194, 868, 985
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 44, 76
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	296, 545
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	63, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 926
Bse1I	ACTGG	2 cut(s)	271, 754
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	2 cut(s)	63, 458
BseGI	GGATG	4 cut(s)	22, 103, 306, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	49, 926
BseMII	CTCAG	2 cut(s)	147, 873
BseNI	ACTGG	2 cut(s)	271, 754
BseRI	GAGGAG	6 cut(s)	98, 101, 104, 107, 128, 503
BseSI	GKGCMC	2 cut(s)	710, 837
BseXI	GCAGC	6 cut(s)	212, 432, 544, 837, 898, 901
BsgI	GTGCAG	1 cut(s)	805
BshFI	GGCC	2 cut(s)	660, 753
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	60, 710
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	49, 926
BsnI	GGCC	2 cut(s)	660, 753
Bsp1286I	GDGCHC	4 cut(s)	60, 120, 710, 837
Bsp143I	GATC	5 cut(s)	331, 628, 682, 796, 929
Bsp1720I	GCTNAGC	1 cut(s)	882
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	3 cut(s)	240, 400, 674
BspANI	GGCC	2 cut(s)	660, 753
BspCNI	CTCAG	2 cut(s)	148, 874
BspLI	GGNNCC	3 cut(s)	117, 398, 798
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	3 cut(s)	791, 804, 937
BspT107I	GGYRCC	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	271, 754
BssECI	CCNNGG	2 cut(s)	63, 458
BssMI	GATC	5 cut(s)	331, 628, 682, 796, 929
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	4 cut(s)	410, 499, 622, 839
Bst6I	CTCTTC	4 cut(s)	302, 328, 585, 649
BstACI	GRCGYC	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	343, 555
BstDEI	CTNAG	3 cut(s)	156, 365, 882
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	22, 103, 306, 1000
BstH2I	RGCGCY	3 cut(s)	219, 400, 940
BstHHI	GCGC	4 cut(s)	185, 218, 399, 939
BstKTI	GATC	5 cut(s)	334, 631, 685, 799, 932
BstMBI	GATC	5 cut(s)	331, 628, 682, 796, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 231, 276, 686
BstNI	CCWGG	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	194, 753
BstSFI	CTRYAG	2 cut(s)	226, 355
BstSLI	GKGCMC	2 cut(s)	710, 837
BstV1I	GCAGC	6 cut(s)	212, 432, 544, 837, 898, 901
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	331, 796, 929
BstYI	RGATCY	3 cut(s)	331, 796, 929
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	660, 753
BtgI	CCRYGG	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	22, 103, 306, 1000
BtsIMutI	CAGTG	2 cut(s)	747, 835
Cac8I	GCNNGC	2 cut(s)	343, 555
CaiI	CAGNNNCTG	2 cut(s)	626, 881
CfoI	GCGC	4 cut(s)	185, 218, 399, 939
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	5 cut(s)	371, 459, 686, 761, 925
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	3 cut(s)	156, 365, 882
DinI	GGCGCC	1 cut(s)	398
DpnI	GATC	5 cut(s)	333, 630, 684, 798, 931
DpnII	GATC	5 cut(s)	331, 628, 682, 796, 929
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	4 cut(s)	302, 328, 585, 649
EarI	CTCTTC	4 cut(s)	302, 328, 585, 649
EciI	GGCGGA	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	5 cut(s)	374, 462, 689, 764, 928
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 564, 596
FatI	CATG	5 cut(s)	370, 458, 685, 760, 924
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	2 cut(s)	628, 682
Fnu4HI	GCNGC	7 cut(s)	226, 400, 446, 558, 851, 887, 890
FokI	GGATG	4 cut(s)	29, 110, 293, 1007
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	7 cut(s)	226, 400, 446, 558, 851, 887, 890
FspBI	CTAG	3 cut(s)	140, 435, 989
GlaI	GCGC	4 cut(s)	184, 217, 398, 938
GluI	GCNGC	7 cut(s)	226, 400, 446, 558, 851, 887, 890
HaeII	RGCGCY	3 cut(s)	219, 400, 940
HaeIII	GGCC	2 cut(s)	660, 753
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	4 cut(s)	185, 218, 399, 939
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	374, 462, 689, 764, 928
Hin6I	GCGC	4 cut(s)	183, 216, 397, 937
HinP1I	GCGC	4 cut(s)	183, 216, 397, 937
HinfI	GANTC	3 cut(s)	47, 386, 872
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	604, 710, 849
Hpy166II	GTNNAC	2 cut(s)	145, 708
Hpy188III	TCNNGA	2 cut(s)	290, 611
Hpy8I	GTNNAC	2 cut(s)	145, 708
HpyAV	CCTTC	2 cut(s)	594, 976
HpyCH4III	ACNGT	4 cut(s)	410, 499, 622, 839
HpyCH4V	TGCA	7 cut(s)	228, 519, 553, 708, 780, 822, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 231, 276, 686
HpyF3I	CTNAG	3 cut(s)	156, 365, 882
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	374, 462, 689, 764, 928
HspAI	GCGC	4 cut(s)	183, 216, 397, 937
KasI	GGCGCC	1 cut(s)	396
Ksp22I	TGATCA	2 cut(s)	628, 682
Kzo9I	GATC	5 cut(s)	331, 628, 682, 796, 929
LmnI	GCTCC	3 cut(s)	115, 896, 985
Lsp1109I	GCAGC	6 cut(s)	212, 432, 544, 837, 898, 901
LweI	GCATC	3 cut(s)	194, 868, 985
MaeI	CTAG	3 cut(s)	140, 435, 989
MaeIII	GTNAC	2 cut(s)	106, 901
MalI	GATC	5 cut(s)	333, 630, 684, 798, 931
MboI	GATC	5 cut(s)	331, 628, 682, 796, 929
MboII	GAAGA	9 cut(s)	86, 180, 183, 289, 315, 341, 572, 666, 875
MflI	RGATCY	3 cut(s)	331, 796, 929
MhlI	GDGCHC	4 cut(s)	60, 120, 710, 837
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	6 cut(s)	170, 514, 606, 720, 775, 967
MluNI	TGGCCA	1 cut(s)	753
Mly113I	GGCGCC	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	1 cut(s)	824
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	753
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	196, 755
MvaI	CCWGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	4 cut(s)	222, 231, 276, 686
NarI	GGCGCC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	5 cut(s)	331, 628, 682, 796, 929
NlaIII	CATG	5 cut(s)	374, 462, 689, 764, 928
NlaIV	GGNNCC	3 cut(s)	117, 398, 798
NmuCI	GTSAC	1 cut(s)	901
PceI	AGGCCT	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	47, 386
PkrI	GCNGC	7 cut(s)	227, 401, 447, 559, 852, 888, 891
PleI	GAGTC	1 cut(s)	880
PluTI	GGCGCC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	3 cut(s)	117, 398, 798
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	2 cut(s)	626, 881
PsuI	RGATCY	3 cut(s)	331, 796, 929
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	765
SatI	GCNGC	7 cut(s)	226, 400, 446, 558, 851, 887, 890
Sau3AI	GATC	5 cut(s)	331, 628, 682, 796, 929
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	2 cut(s)	196, 755
SduI	GDGCHC	4 cut(s)	60, 120, 710, 837
SfaNI	GCATC	3 cut(s)	194, 868, 985
SfcI	CTRYAG	2 cut(s)	226, 355
SfoI	GGCGCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	2 cut(s)	311, 524
SmoI	CTYRAG	2 cut(s)	311, 524
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	6 cut(s)	170, 514, 606, 720, 775, 967
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	3 cut(s)	240, 400, 674
SspDI	GGCGCC	1 cut(s)	396
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	3 cut(s)	140, 435, 989
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	194, 753
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	410, 499, 622, 839
TaqI	TCGA	1 cut(s)	843
TasI	AATT	6 cut(s)	170, 514, 606, 720, 775, 967
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	47, 386
TscAI	CASTG	2 cut(s)	754, 842
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	6 cut(s)	225, 445, 557, 850, 886, 889
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	3 cut(s)	399, 749, 913
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	2 cut(s)	754, 842
VneI	GTGCAC	1 cut(s)	706
XspI	CTAG	3 cut(s)	140, 435, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.