pycom15g01060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013929
Physical Location & Seq
Reverse (-)
568013 .. 569721
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGCCGCCAAAGGACACGAAGCCCGCGAAGCCGGAGAGGGAGGTGAAAGCGGAAGAAGACGACGACGATGAGAAGAGCTTGGCTTCGATTGCGTTGGAGCTCAAGAAGAAGCAACCAACAAAAAGCAGTGGCAATGCGAATGGAATGACGAGATCTGAGGTCAGAGAAGCCGCTAAGGTGAAGAAGGAGGAGAAGATGGACCAAGATTCCGATAAGCCCACGAAGGCGAAGCCCAAACAAGAACCCAGAGTGAAGAAGGAGGAGAACGGCAGCGTGAGCGACGAGGAATTGGGTTTGAAGCCGAAAAGGAGTTCGAATTCGAGGCCCGAAAAGGAAATCAAGAACAACAAGGTGAAAAAAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGGAGGAAGAGGAAGGCTTCGGAGGCTGCGACGGAGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAAGGACCCTCCCGAGAAGTTCAGAAGGACCCACTTAGGCAATTTTATGAGTCGCTTCACCAGCAAATTCTCAGTAGCGAAATCGCGCAGTTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.83

Weight (kDa)

9.46

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 562
AciI CCGC 4 cut(s) 5, 24, 50, 171
AcsI RAATTY 2 cut(s) 316, 542
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 2 cut(s) 78, 100
AluI AGCT 2 cut(s) 78, 100
Alw21I GWGCWC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 270, 419
ApoI RAATTY 2 cut(s) 316, 542
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 4 cut(s) 199, 324, 481, 504
AsuHPI GGTGA 4 cut(s) 55, 190, 364, 526
AsuII TTCGAA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 3 cut(s) 199, 481, 504
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 282, 406
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 468
BglII AGATCT 1 cut(s) 152
BisI GCNGC 4 cut(s) 5, 171, 271, 420
BlsI GCNGC 4 cut(s) 6, 172, 272, 421
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 3 cut(s) 199, 481, 504
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 4 cut(s) 199, 324, 481, 504
BmiI GGNNCC 2 cut(s) 483, 506
BmrFI CCNGG 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 468
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 147, 561
BseXI GCAGC 2 cut(s) 282, 406
Bsh1236I CGCG 2 cut(s) 26, 562
BshFI GGCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 1 cut(s) 32
BsnI GGCC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 4 cut(s) 5, 24, 50, 171
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 148, 560
BspFNI CGCG 2 cut(s) 26, 562
BspLI GGNNCC 2 cut(s) 483, 506
BspQI GCTCTTC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 139
BssMI GATC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 468
Bst6I CTCTTC 3 cut(s) 68, 395, 434
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 4 cut(s) 156, 174, 511, 547
BstFNI CGCG 2 cut(s) 26, 562
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 5 cut(s) 28, 89, 276, 416, 537
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstUI CGCG 2 cut(s) 26, 562
BstV1I GCAGC 2 cut(s) 282, 406
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 4 cut(s) 199, 324, 481, 504
DdeI CTNAG 4 cut(s) 156, 174, 511, 547
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eam1104I CTCTTC 3 cut(s) 68, 395, 434
EarI CTCTTC 3 cut(s) 68, 395, 434
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 199, 481, 504
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 2 cut(s) 481, 504
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 102
FaiI YATR 2 cut(s) 459, 524
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 5, 171, 271, 420
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 5, 171, 271, 420
GlaI GCGC 1 cut(s) 563
GluI GCNGC 4 cut(s) 5, 171, 271, 420
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 564
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HinfI GANTC 2 cut(s) 206, 526
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 55, 190, 364, 526
Hpy188I TCNGA 6 cut(s) 157, 164, 211, 415, 474, 500
Hpy188III TCNNGA 4 cut(s) 103, 340, 488, 570
Hpy99I CGWCG 4 cut(s) 65, 68, 284, 427
HpyAV CCTTC 8 cut(s) 178, 217, 250, 385, 400, 445, 472, 495
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 89, 276, 416, 537
HpyF3I CTNAG 4 cut(s) 156, 174, 511, 547
HspAI GCGC 1 cut(s) 562
Kzo9I GATC 1 cut(s) 152
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 45, 259, 453, 480, 550, 555
Lsp1109I GCAGC 2 cut(s) 282, 406
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 287, 316, 517, 542
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 75
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 2 cut(s) 26, 562
MwoI GCNNNNNNNGC 5 cut(s) 28, 89, 276, 416, 537
NdeII GATC 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 483, 506
NspV TTCGAA 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 419
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 4 cut(s) 6, 172, 272, 421
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 2 cut(s) 481, 504
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 2 cut(s) 481, 504
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 2 cut(s) 483, 506
PspPI GGNCC 4 cut(s) 199, 324, 481, 504
PspPPI RGGWCCY 2 cut(s) 481, 504
PsuI RGATCY 1 cut(s) 152
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 68
SatI GCNGC 4 cut(s) 5, 171, 271, 420
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 4 cut(s) 199, 324, 481, 504
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 102
SetI ASST 7 cut(s) 45, 80, 102, 162, 180, 354, 456
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 3 cut(s) 199, 481, 504
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 287, 316, 517, 542
SsiI CCGC 4 cut(s) 5, 24, 50, 171
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 466
TaqI TCGA 3 cut(s) 86, 314, 320
TasI AATT 4 cut(s) 287, 316, 517, 542
TauI GCSGC 2 cut(s) 7, 173
TfiI GAWTC 1 cut(s) 206
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 270, 419
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 3 cut(s) 199, 481, 504
XapI RAATTY 2 cut(s) 316, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.