Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005083

Physical Location & Seq

Genomic Coordinates Forward (+)

589752 .. 591118

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTAGTACCACCTGCCACCAAGCATCGACACGTGAGACGTGGAGGAGGAGCCACTCGCTTCAAGCAATCTTCTGGACCCAACAACGACACCAAGCTCTTCACCTGTTTGGATGGTGGTGGGGACTTCGTGCTCTCTGGAAAATCAACGAAGAAAGAGAGGCTCAGAAAATTAAGTGCTCTTGGTACTGCAAAAACGACGAGCTTTCGAGACTGCGAAATGGGTTGCAACGTGTCTGACAGAGACGATGAGCTCCCCAGTAAGAGATTTAAGCTTCCCAGAAAGTTTTTTTATGATTGCATTGGCGTTGATCGTTCCTCTGTTCCACGGAAGCTGCGATCAGCAATGAAGAAGCGCAACCGTGAATCCGCATCTCCGTCCCCGTCTTTGCCAGATGCAAAGAAGAAATCACAAAAGATGAGGAAGAAGTTGTGGAGACCTTGTATGCTTTGGCTGGACTGTTCCCCAGGAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.88

Weight (kDa)

10.38

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75730 AT1G75730
fragaria_vesca	FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520
malus_domestica	MD08G1013300.v1.1 MD15G1012700.v1.1
prunus_persica	Prupe.1G365800_v2.0.a1
pyrus_communis	pycom08g01170 pycom15g01100
rosa_chinensis	RchiOBHm_Chr3g0493711 RchiOBHm_Chr6g0302801
rosa_laevigata	RLG00000011136
rosa_multiflora	Rmu_ssc0000460.1_g000006
rosa_roxburghii	Rroxscaffold_2G00128160 Rroxscaffold_7G00165310
rosa_rugosa	Rorug06G0317100 Rorug06G0317200 Rorug06G0317300 Rorug06G0317300 Rorug06G0317300
rosa_samantha	Rh6AG430500 Rh6BG472100 Rh6CG443000 Rh6DG429700
rosa_wichuraiana	Rw4G032330 Rw6G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AciI	CCGC	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	9, 187
AflIII	ACRYGT	2 cut(s)	31, 231
AgsI	TTSAA	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	5 cut(s)	97, 204, 253, 274, 334
AluI	AGCT	5 cut(s)	97, 204, 253, 274, 334
Alw21I	GWGCWC	3 cut(s)	135, 181, 255
Alw26I	GTCTC	4 cut(s)	31, 204, 237, 430
ApeKI	GCWGC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	34
Bbv12I	GWGCWC	3 cut(s)	135, 181, 255
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	4 cut(s)	31, 204, 237, 430
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	52, 79
BmrFI	CCNGG	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	34, 380, 385
BmuI	ACTGGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	326, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	326, 466
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	60, 63
BseXI	GCAGC	1 cut(s)	321
BsiHKAI	GWGCWC	3 cut(s)	135, 181, 255
BslFI	GGGAC	2 cut(s)	137, 364
BsmAI	GTCTC	4 cut(s)	31, 204, 237, 430
BsmBI	CGTCTC	2 cut(s)	31, 237
BsmFI	GGGAC	2 cut(s)	137, 364
Bso31I	GGTCTC	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	135, 181, 255
Bsp143I	GATC	2 cut(s)	310, 338
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	52, 79
BspMI	ACCTGC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	326, 466
BssMI	GATC	2 cut(s)	310, 338
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	362, 461
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	2 cut(s)	313, 341
BstMAI	GTCTC	4 cut(s)	31, 204, 237, 430
BstMBI	GATC	2 cut(s)	310, 338
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	8, 186
CviJI	RGCY	8 cut(s)	53, 97, 163, 204, 253, 274, 334, 454
CviKI_1	RGCY	8 cut(s)	53, 97, 163, 204, 253, 274, 334, 454
CviQI	GTAC	2 cut(s)	8, 186
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	312, 340
DpnII	GATC	2 cut(s)	310, 338
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	255
Esp3I	CGTCTC	2 cut(s)	31, 237
FaiI	YATR	2 cut(s)	294, 446
FaqI	GGGAC	2 cut(s)	137, 364
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	335
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	357
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	167, 238
Hpy188III	TCNNGA	3 cut(s)	75, 138, 209
Hpy99I	CGWCG	2 cut(s)	202, 478
HpyCH4III	ACNGT	2 cut(s)	362, 461
HpyCH4IV	ACGT	4 cut(s)	33, 40, 231, 476
HpyCH4V	TGCA	4 cut(s)	191, 228, 300, 398
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	4 cut(s)	33, 40, 231, 476
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	310, 338
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	50, 258
LpnPI	CCDG	9 cut(s)	27, 60, 118, 123, 271, 292, 405, 440, 453
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	34, 380, 385
MaeII	ACGT	4 cut(s)	33, 40, 231, 476
MalI	GATC	2 cut(s)	312, 340
MboI	GATC	2 cut(s)	310, 338
MboII	GAAGA	6 cut(s)	63, 91, 163, 361, 415, 436
MhlI	GDGCHC	3 cut(s)	135, 181, 255
MluCI	AATT	1 cut(s)	170
MnlI	CCTC	5 cut(s)	38, 41, 153, 328, 414
MseI	TTAA	2 cut(s)	173, 270
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	310, 338
NlaIV	GGNNCC	2 cut(s)	52, 79
PaqCI	CACCTGC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	336
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	466
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	52, 79
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	9, 187
RsaNI	GTAC	2 cut(s)	8, 186
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	173, 270
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	310, 338
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	3 cut(s)	135, 181, 255
SfaNI	GCATC	3 cut(s)	34, 380, 385
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	362, 461
TaiI	ACGT	4 cut(s)	36, 43, 234, 479
TaqI	TCGA	2 cut(s)	28, 208
TasI	AATT	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	173, 270
Tru9I	TTAA	2 cut(s)	173, 270
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	2 cut(s)	343, 366
VpaK11BI	GGWCC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.