Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005083

Physical Location & Seq

Genomic Coordinates Forward (+)

59501337 .. 59505077

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGGGCCAACTTCTTTCCAAAAGATATCTTGCTTTTTGTCTGGAACTCCTCTTCAAAAATGCCATAGTTACACCAAGGAACATGAATCTCCTGTGCCATCAAAAGAGAGAGATTCCCGGTGTTGGTGGGGACTTTGTGCTGCTTGAGAAATCGAAGAAGGAGAGGATTAGGAAATTGAGTACTATTAGTGGAGAAGCGATTTCTTCGAGCTTAGAAATGGGTTGTGATGTGTCTGATAGAGAAGATGAGGAACTTAAGCTACCCAGAAAGGTTGATCTTAGTCACGTCCCATATGGCCACATTAATAACGCTGTAGATACCTCTACTAGCAAGGCTAGCCGCAAGGCTCGACACACTAGTACACATTCAAGTGGACGTAGTTTCCCGCTAAGGCGGGAGACGAACCACTATACATCTCGTGTCACTCTCTCTCTCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

9.54

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75730 AT1G75730
fragaria_vesca	FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520
malus_domestica	MD08G1013300.v1.1 MD15G1012700.v1.1
prunus_persica	Prupe.1G365800_v2.0.a1
pyrus_communis	pycom08g01170 pycom15g01100
rosa_chinensis	RchiOBHm_Chr3g0493711 RchiOBHm_Chr6g0302801
rosa_laevigata	RLG00000011136
rosa_multiflora	Rmu_ssc0000460.1_g000006
rosa_roxburghii	Rroxscaffold_2G00128160 Rroxscaffold_7G00165310
rosa_rugosa	Rorug06G0317100 Rorug06G0317200 Rorug06G0317300 Rorug06G0317300 Rorug06G0317300
rosa_samantha	Rh6AG430500 Rh6BG472100 Rh6CG443000 Rh6DG429700
rosa_wichuraiana	Rw4G032330 Rw6G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	343, 389, 397
AcoI	YGGCCR	1 cut(s)	298
AfaI	GTAC	2 cut(s)	184, 364
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	58, 372
AhlI	ACTAGT	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	2 cut(s)	213, 262
AluI	AGCT	2 cut(s)	213, 262
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	2 cut(s)	7, 298
ApeKI	GCWGC	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	120
AsuNHI	GCTAGC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	300
BauI	CACGAG	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	3 cut(s)	330, 339, 360
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	2 cut(s)	143, 343
BlsI	GCNGC	2 cut(s)	144, 344
BmcAI	AGTACT	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	9, 300
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	146, 275
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	146, 275
BsnI	GGCC	2 cut(s)	9, 300
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	3 cut(s)	343, 389, 397
BspANI	GGCC	2 cut(s)	9, 300
BspOI	GCTAGC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	214, 281, 392
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	9, 300
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	183, 363
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	7 cut(s)	9, 213, 262, 300, 338, 342, 350
CviKI_1	RGCY	7 cut(s)	9, 213, 262, 300, 338, 342, 350
CviQI	GTAC	2 cut(s)	183, 363
DdeI	CTNAG	3 cut(s)	214, 281, 392
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	88
FaiI	YATR	5 cut(s)	68, 86, 295, 297, 414
FaqI	GGGAC	2 cut(s)	146, 275
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	390, 396
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	143, 343
Fsp4HI	GCNGC	2 cut(s)	143, 343
FspBI	CTAG	3 cut(s)	330, 339, 360
GluI	GCNGC	2 cut(s)	143, 343
HaeIII	GGCC	2 cut(s)	9, 300
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	2 cut(s)	88, 115
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	365, 377
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	365, 377
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	288, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	3 cut(s)	214, 281, 392
HpySE526I	ACGT	2 cut(s)	288, 379
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	29, 107, 133, 280
Lsp1109I	GCAGC	1 cut(s)	129
MaeI	CTAG	3 cut(s)	330, 339, 360
MaeII	ACGT	2 cut(s)	288, 379
MaeIII	GTNAC	3 cut(s)	70, 284, 424
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	46, 169, 198, 257
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	300
MnlI	CCTC	4 cut(s)	62, 159, 244, 334
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	258, 306
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	300
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	1 cut(s)	277
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	284, 424
PfeI	GAWTC	2 cut(s)	88, 115
PkrI	GCNGC	2 cut(s)	144, 344
PshBI	ATTAAT	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	7
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
RsaI	GTAC	2 cut(s)	184, 364
RsaNI	GTAC	2 cut(s)	183, 363
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	258, 306
SatI	GCNGC	2 cut(s)	143, 343
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	6 cut(s)	215, 264, 276, 291, 326, 382
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	146, 257
SmoI	CTYRAG	2 cut(s)	146, 257
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	343, 389, 397
SspMI	CTAG	3 cut(s)	330, 339, 360
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	2 cut(s)	291, 382
TaqI	TCGA	3 cut(s)	155, 209, 352
TasI	AATT	1 cut(s)	176
TatI	WGTACW	2 cut(s)	182, 362
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	88, 115
Tru1I	TTAA	2 cut(s)	258, 306
Tru9I	TTAA	2 cut(s)	258, 306
TseFI	GTSAC	2 cut(s)	284, 424
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	2 cut(s)	284, 424
TspDTI	ATGAA	1 cut(s)	101
Vha464I	CTTAAG	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	306
XspI	CTAG	3 cut(s)	330, 339, 360
ZrmI	AGTACT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.