Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005083

Physical Location & Seq

Genomic Coordinates Forward (+)

46883231 .. 46886924

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAAATAGTTCGGAGTTCTAAGAAACTAGACGAGAAGTTTGAGTTCTCTGGAAATTTCACCATAGATTTTGCTGGAGATCGTAAGGCTGATGACCTGCACAAAACTTGTGTGGAACCCTTGTTCTTTAATTTTGCGGAATTGGAGGATGCTGCCAATGACCTTGAATTTCAGTCAGCCATGCCACTTCTCAGTGGTCTTGAAAATTCAGACTATGAGCAAATAGCAGTTATCAAAAAGCATACTATAGATGCAAAGAGGGGAGAAGGATATGGAGGAGAGGAAAAAAGTGAAGGAGAGGGAGATGGAGGAGAGGAAGAAAATGAAGGAAAGGGAGATGGGGGAGAGAAAGAAAGTGAAGGAAAGGGAGATGGGGGAGAGAAAGAAAATGAAGGAAAGGGAGAGAGTGAAGAAGAGAGAGATGGAGGAAAGGAAGAAAATCAAGGAAAAGGAGAGAGTGAAGAAGAGAGAGATGGAGGAGAGGCAGAGGGTGGAGAAGATGAAGAAAGTGGAGAAGAGATAGATGGAAAAGGAGGGAATTCTGTAAATGATGAGATTGAGAACGTTGTTGAGAACCTTGGGGACTTAAGCCCTAAGTATCCTACTCCTGATATTGTAGAGTACACAATCAAGTATTGTTACTTGGCTGAGGAGAGAATAGTGGCAAGCACATGTGCAGAACTAACAGAGGCAGAGATGGATTATGATGAGTTTGTAGAGACCTTTAGGTTTGTGCTTGCATATGATCCCACAGATGATGATGAGGTTGAATTTCTGGAAATTGTAGAAAAGGTGAGGAGCAGTAATCCTTCATATTTTGATGACGAAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

30.76

Weight (kDa)

4.06

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75730 AT1G75730
fragaria_vesca	FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520
malus_domestica	MD08G1013300.v1.1 MD15G1012700.v1.1
prunus_persica	Prupe.1G365800_v2.0.a1
pyrus_communis	pycom08g01170 pycom15g01100
rosa_chinensis	RchiOBHm_Chr3g0493711 RchiOBHm_Chr6g0302801
rosa_laevigata	RLG00000011136
rosa_multiflora	Rmu_ssc0000460.1_g000006
rosa_roxburghii	Rroxscaffold_2G00128160 Rroxscaffold_7G00165310
rosa_rugosa	Rorug06G0317100 Rorug06G0317200 Rorug06G0317300 Rorug06G0317300 Rorug06G0317300
rosa_samantha	Rh6AG430500 Rh6BG472100 Rh6CG443000 Rh6DG429700
rosa_wichuraiana	Rw4G032330 Rw6G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	105
AciI	CCGC	1 cut(s)	137
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	1 cut(s)	740
AcsI	RAATTY	5 cut(s)	55, 167, 205, 538, 770
AfaI	GTAC	1 cut(s)	623
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	167, 203, 770
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	740
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	5 cut(s)	55, 167, 205, 538, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	52, 805
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	7 cut(s)	299, 332, 365, 416, 467, 518, 691
BciVI	GTATCC	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	2 cut(s)	139, 241
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	205, 639
BseRI	GAGGAG	5 cut(s)	291, 324, 492, 665, 811
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	2 cut(s)	83, 696
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	596
Bso31I	GGTCTC	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	79, 745
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	204, 640
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	740
BspTI	CTTAAG	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	79, 745
BssT1I	CCWWGG	1 cut(s)	577
Bst6I	CTCTTC	3 cut(s)	408, 459, 510
BstAFI	CTTAAG	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	667, 738
BstDEI	CTNAG	4 cut(s)	21, 191, 594, 648
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	82, 748
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	2 cut(s)	79, 745
BstNSI	RCATGY	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	667, 738
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	2 cut(s)	181, 672
CviJI	RGCY	4 cut(s)	89, 179, 591, 647
CviKI_1	RGCY	4 cut(s)	89, 179, 591, 647
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	4 cut(s)	21, 191, 594, 648
DpnI	GATC	2 cut(s)	81, 747
DpnII	GATC	2 cut(s)	79, 745
Eam1104I	CTCTTC	3 cut(s)	408, 459, 510
EarI	CTCTTC	3 cut(s)	408, 459, 510
Eco130I	CCWWGG	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	184, 675
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	2 cut(s)	180, 671
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	184, 675
HphI	GGTGA	2 cut(s)	52, 805
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	2 cut(s)	15, 211
Hpy188III	TCNNGA	4 cut(s)	51, 200, 608, 776
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	6 cut(s)	260, 287, 320, 353, 386, 819
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	4 cut(s)	100, 254, 677, 740
HpyF3I	CTNAG	4 cut(s)	21, 191, 594, 648
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	184, 675
Kzo9I	GATC	2 cut(s)	79, 745
LmnI	GCTCC	1 cut(s)	798
LpnPI	CCDG	5 cut(s)	36, 60, 110, 621, 761
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	139, 241
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	2 cut(s)	81, 747
MboI	GATC	2 cut(s)	79, 745
MboII	GAAGA	9 cut(s)	329, 422, 425, 446, 473, 476, 509, 515, 527
MluCI	AATT	9 cut(s)	55, 130, 140, 167, 205, 538, 770, 780, 828
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	129, 587
MspCI	CTTAAG	1 cut(s)	586
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	79, 745
NlaIII	CATG	2 cut(s)	184, 675
NlaIV	GGNNCC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	675
PciI	ACATGT	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	154
PscI	ACATGT	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	2 cut(s)	129, 587
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	79, 745
SetI	ASST	8 cut(s)	99, 165, 567, 579, 725, 731, 768, 795
SfaNI	GCATC	2 cut(s)	139, 241
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	9 cut(s)	55, 130, 140, 167, 205, 538, 770, 780, 828
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	577
TaiI	ACGT	1 cut(s)	567
TasI	AATT	9 cut(s)	55, 130, 140, 167, 205, 538, 770, 780, 828
TatI	WGTACW	1 cut(s)	621
Tru1I	TTAA	2 cut(s)	129, 587
Tru9I	TTAA	2 cut(s)	129, 587
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	339, 405, 516, 801
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	5 cut(s)	55, 167, 205, 538, 770
XceI	RCATGY	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.