Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005083

Physical Location & Seq

Genomic Coordinates Reverse (-)

46854195 .. 46855859

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCTCTGAATGATAGCATTTTTTGCATTTTTGATTTGGATGATGGACGTGAAAGGGTGCTCACTGATTTGTTGAATTTTTTTGGGTTACATGTGGTCAATCAGAGAAGAAAACAAATCTTATCGAGGGAAGTTTCATGGTTAGATTGTGGTCACCGTGAAATGAAGAGATATTGGCTTTGGGATTCCTTCCAAATGCTGGGGTTGCTGTCGGCGTTTCCCAGTGAATCTTATTTCCAGCCTCCACAGAGTTTCCATGTTGCGGACAAAAGGGAGGACGTCTTAAGGTTGGCCCAACTATCAGCAGAAAAACCTTATTTTTGTCATTGTATGGATAATCAGTATTTGATGCAGACATATCCAGTGGGTCACCTAATGAGAGGATTTCTCCAAGTCTCAACCCTAGTTATGGTAGGAACCAAGAACAACTACAGGTTAAGTGGTGTGTCTATTGTTAATGGTTTTCTTATTGTTGTTGAGACGGTGTACGTTATGAGAGAACTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.87

Weight (kDa)

6.5

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75730 AT1G75730
fragaria_vesca	FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520
malus_domestica	MD08G1013300.v1.1 MD15G1012700.v1.1
prunus_persica	Prupe.1G365800_v2.0.a1
pyrus_communis	pycom08g01170 pycom15g01100
rosa_chinensis	RchiOBHm_Chr3g0493711 RchiOBHm_Chr6g0302801
rosa_laevigata	RLG00000011136
rosa_multiflora	Rmu_ssc0000460.1_g000006
rosa_roxburghii	Rroxscaffold_2G00128160 Rroxscaffold_7G00165310
rosa_rugosa	Rorug06G0317100 Rorug06G0317200 Rorug06G0317300 Rorug06G0317300 Rorug06G0317300
rosa_samantha	Rh6AG430500 Rh6BG472100 Rh6CG443000 Rh6DG429700
rosa_wichuraiana	Rw4G032330 Rw6G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	3 cut(s)	199, 262, 409
AflII	CTTAAG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	400, 473
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	146, 362
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	400, 473
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	430
BfrI	CTTAAG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	418
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
BsaHI	GRCGYC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 262, 409
Bse1I	ACTGG	2 cut(s)	222, 362
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	199, 262, 409
BseNI	ACTGG	2 cut(s)	222, 362
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	199, 262, 409
BsmAI	GTCTC	2 cut(s)	400, 473
BsmBI	CGTCTC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	222, 362
BssNI	GRCGYC	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	158, 484
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstEII	GGTNACC	2 cut(s)	152, 368
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	400, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 205
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	2 cut(s)	152, 368
BstSFI	CTRYAG	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	63, 229, 369
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	3 cut(s)	92, 138, 257
CviJI	RGCY	3 cut(s)	178, 241, 293
CviKI_1	RGCY	3 cut(s)	178, 241, 293
CviQI	GTAC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco91I	GGTNACC	2 cut(s)	152, 368
EcoO65I	GGTNACC	2 cut(s)	152, 368
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	3 cut(s)	95, 141, 260
FaiI	YATR	8 cut(s)	93, 139, 258, 332, 358, 410, 494, 505
FatI	CATG	3 cut(s)	91, 137, 256
FokI	GGATG	1 cut(s)	53
FspBI	CTAG	1 cut(s)	404
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	95, 141, 260
HinfI	GANTC	2 cut(s)	185, 227
HphI	GGTGA	2 cut(s)	146, 362
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	9, 105
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	158, 484
HpyCH4IV	ACGT	3 cut(s)	49, 279, 489
HpyCH4V	TGCA	2 cut(s)	27, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 205
HpySE526I	ACGT	3 cut(s)	49, 279, 489
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	95, 141, 260
LpnPI	CCDG	5 cut(s)	185, 235, 251, 375, 418
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	3 cut(s)	49, 279, 489
MaeIII	GTNAC	3 cut(s)	87, 152, 368
MboII	GAAGA	2 cut(s)	120, 178
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	76
MnlI	CCTC	5 cut(s)	15, 120, 252, 268, 374
MseI	TTAA	3 cut(s)	284, 437, 456
MspCI	CTTAAG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	24, 205
NlaIII	CATG	3 cut(s)	95, 141, 260
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	152, 368
NspI	RCATGY	1 cut(s)	95
PciI	ACATGT	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	185, 227
PflMI	CCANNNNNTGG	1 cut(s)	199
PscI	ACATGT	1 cut(s)	91
PspEI	GGTNACC	2 cut(s)	152, 368
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	284, 437, 456
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	52, 282, 290, 316, 375, 437, 492
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	158, 484
TaiI	ACGT	3 cut(s)	52, 282, 492
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	185, 227
Tru1I	TTAA	3 cut(s)	284, 437, 456
Tru9I	TTAA	3 cut(s)	284, 437, 456
TscAI	CASTG	3 cut(s)	70, 229, 369
TseFI	GTSAC	2 cut(s)	152, 368
Tsp45I	GTSAC	2 cut(s)	152, 368
TspDTI	ATGAA	2 cut(s)	126, 179
TspRI	CASTG	3 cut(s)	70, 229, 369
Van91I	CCANNNNNTGG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.