RchiOBHm_Chr3g0493711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005083
Physical Location & Seq
Forward (+)
40999124 .. 40999881
758 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45645

Sequence Viewer

Length: 288 bp
ATGAGGGAGCCTCCTTCCCCTATAAAAGGAGACTCCTCCCACAACTCAACACATCCCATTACATCTCTTGTAATCTTGTTAGGCCGCAAGGTTCGACACACTAGTGCACATTCAAGTGGACGTAGTTTCCCGCTAAGGCGGGAAACGAACCACTATACATCTCGTGTCACTCTCTCTCTCTATCTCTCTCTTAAGCTAACTAGAGATCCCACGGATCCAAACGTTAACATTGACGCCATCTGTGGGAAGCCGACACACAAAGGCTTCGTCACCTACCACGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.64

Weight (kDa)

10.0

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 85, 131, 139
AclI AACGTT 1 cut(s) 222
AclWI GGATC 3 cut(s) 200, 209, 222
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 26, 243
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 114
AhlI ACTAGT 1 cut(s) 101
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 105
AlwI GGATC 3 cut(s) 200, 209, 222
AoxI GGCC 1 cut(s) 82
ApaLI GTGCAC 1 cut(s) 105
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 109
BamHI GGATCC 1 cut(s) 214
BauI CACGAG 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 201
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 9, 216
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 243
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 26, 243
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 109
BshFI GGCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 26, 243
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 205, 214
BspACI CCGC 3 cut(s) 85, 131, 139
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 9, 216
BspPI GGATC 3 cut(s) 200, 209, 222
BspTI CTTAAG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 205, 214
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 210
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 208, 217
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 205, 214
BstSLI GKGCMC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 205, 214
BstYI RGATCY 2 cut(s) 205, 214
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 52
CseI GACGC 1 cut(s) 242
CspCI CAANNNNNGTGG 1 cut(s) 266
CviJI RGCY 5 cut(s) 10, 84, 196, 250, 264
CviKI_1 RGCY 5 cut(s) 10, 84, 196, 250, 264
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 207, 216
DpnII GATC 2 cut(s) 205, 214
EcoNI CCTNNNNNAGG 1 cut(s) 24
FaiI YATR 2 cut(s) 23, 156
FauI CCCGC 2 cut(s) 132, 138
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 102, 201
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 84
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 32
HpaI GTTAAC 1 cut(s) 226
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 107, 119, 226
Hpy8I GTNNAC 3 cut(s) 107, 119, 226
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 2 cut(s) 121, 222
HpyCH4V TGCA 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 121, 222
Hsp92I GRCGYC 1 cut(s) 234
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 205, 214
LmnI GCTCC 1 cut(s) 7
MaeI CTAG 2 cut(s) 102, 201
MaeII ACGT 2 cut(s) 121, 222
MaeIII GTNAC 2 cut(s) 166, 268
MalI GATC 2 cut(s) 207, 216
MboI GATC 2 cut(s) 205, 214
MflI RGATCY 2 cut(s) 205, 214
MhlI GDGCHC 1 cut(s) 109
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 21, 46
MseI TTAA 2 cut(s) 192, 225
MslI CAYNNNNRTG 2 cut(s) 102, 114
MspCI CTTAAG 1 cut(s) 191
NdeII GATC 2 cut(s) 205, 214
NlaIV GGNNCC 2 cut(s) 9, 216
NmuCI GTSAC 2 cut(s) 166, 268
OliI CACNNNNGTG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Psp1406I AACGTT 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 9, 216
PsuI RGATCY 2 cut(s) 205, 214
RseI CAYNNNNRTG 2 cut(s) 102, 114
SaqAI TTAA 2 cut(s) 192, 225
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 205, 214
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 109
SetI ASST 5 cut(s) 93, 124, 198, 225, 275
SmiMI CAYNNNNRTG 2 cut(s) 102, 114
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 101
SsiI CCGC 3 cut(s) 85, 131, 139
SspMI CTAG 2 cut(s) 102, 201
TaiI ACGT 2 cut(s) 124, 225
TaqI TCGA 1 cut(s) 94
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 192, 225
Tru9I TTAA 2 cut(s) 192, 225
TseFI GTSAC 2 cut(s) 166, 268
Tsp45I GTSAC 2 cut(s) 166, 268
TspGWI ACGGA 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 24
XspI CTAG 2 cut(s) 102, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.