Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005083

Physical Location & Seq

Genomic Coordinates Reverse (-)

60962029 .. 60968904

Gene Structure 6876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGTCCATCACCTTTCTTCTTCTTCTTTTTTCGGTTTTTGAAGCTGCTGCTGGCGACTTTGTGCTGCTTGAGAAATCGAAGAAGGAGAGGATTAGGAAATTGAGTACTATTGGTAGAGGAGCGACTTATTCGAGCTTAGAAATGGGTTGTGATGATGTGTCTGATAGAGAAGATGAGGAGCTTCCCAGTAAGAGAATTAAGCTACCCACAAAGTCTATGGGTGACTGCAATGGCGTTCATCTACCCTCTGTGCCTCGGAAACTGCGTTCAGCAATGAAGAAGCGCCATCGTCAATCTACATCTCCGTCTTTATCAAATTCAAGGAAGCTACTGAGTGGCACTGAGTCTCTCAACTGCGATGGCGTAAAGAAGCCATGCTTGAAACAAGGAGATAGATCCCCTAAAGAGACTGTTTCTGGGCCTATCACAAAAGATGAGGAAGAAGTTGTGGAGACCTTGTATGCTTTGGCTGGATTGGTGTTCCCCAACAATGAAGCAAATGGTAATGGCAAAGTAGAATCTGAAACTTTAGATGCAAATGCTTCAGCTTTGCCAGAGTCAAAGAACAGTCCTGCGCCTGCAGTTGAAGTTGGAGACATCAAATTGGATCCAGTTTTCCCCTGTAGAGCTACCAGCTCCACCAGTCCATCTTACGTAGAAGGATTCACTAAAGGAACTGATCAAGTTGATTTATTGAACAATCCCAGTACTCATTATCAGCCTGAATTTCCCAACAGTGGCAAACTCTGTATAGACTCGAATAATAACGTCTCTCATAATCAAATAAACATTTCTTCCTTGTCAGCTAAGGTTGAACAGTGCAATGAAAAGCATTTCAGCAATGCTGTCAACTTCCGTGATCCATCCGAGTTAAGCCTGGATAGTCGGTTAACGCAGACAGTGCAACAGCTGACCTCAGTTTTCAGTAGAAAACCAGAAATTGCAGTGGAGCTGGGCACGAACATTGGGAGTCAAGTTCAAAAACATGATATGCTCCAGGAATCCAGGAAGAAAGGTTCAGGATTGTGGCCTGGATTGGCTTCAAATGTCTCACATGGTGCTAAGAGTGATAGTCCACTTTTGCAGAGCCCTGCTGCTACAATGCCTCCCTGGATGGATGCTGTTTTGTCGACCTCCAGAGCATCAATCCAAAATGGTTCTTCTTTTGCAAAGGTTATGAAAGTTGTCAATGGTACAAGATCGTGTAAGAAATGTGCAGCTCATGTCTATATAAGTCATTTGATCCAGTCTCTAAAAAGCTCTGACAGCAAAGATCAGTTACTGCTACAACCTAGTCAAATGAGAGCACATGAAGGATCCGAACAAGGGGCTTTTTTGGGAGTTAATACCTATACTAATGTTAAAAGTGGTTTCAATGAGGTTGTTTCCAGCAGTAGCATAAGAATCTCTACTGCTGAAAAAGTTCCAAATGAAGCTAAGAACGGTATTCTTCAGCACAAGAAGCTCCATCTAGATCAGCCATCGTATACTTTGGCATCTGGGGCACACACATCACCAAAACAGGTAAAGCTTGATACTGTAACTGCCATAGGTTTATGGCTTATGCTGTTCTCACTTCTTAGTGGTCTCTTGTTTCCTGCAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

536

Amino Acids

58.07

Weight (kDa)

8.56

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75730 AT1G75730
fragaria_vesca	FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520 FvH4_2g38520
malus_domestica	MD08G1013300.v1.1 MD15G1012700.v1.1
prunus_persica	Prupe.1G365800_v2.0.a1
pyrus_communis	pycom08g01170 pycom15g01100
rosa_chinensis	RchiOBHm_Chr3g0493711 RchiOBHm_Chr6g0302801
rosa_laevigata	RLG00000011136
rosa_multiflora	Rmu_ssc0000460.1_g000006
rosa_roxburghii	Rroxscaffold_2G00128160 Rroxscaffold_7G00165310
rosa_rugosa	Rorug06G0317100 Rorug06G0317200 Rorug06G0317300 Rorug06G0317300 Rorug06G0317300
rosa_samantha	Rh6AG430500 Rh6BG472100 Rh6CG443000 Rh6DG429700
rosa_wichuraiana	Rw4G032330 Rw6G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1130, 1487
AclWI	GGATC	7 cut(s)	390, 602, 615, 854, 1237, 1311, 1324
AcsI	RAATTY	2 cut(s)	316, 725
AcuI	CTGAAG	2 cut(s)	528, 1436
AdeI	CACNNNGTG	1 cut(s)	1058
AfaI	GTAC	3 cut(s)	106, 709, 1195
AfiI	CCNNNNNNNGG	2 cut(s)	737, 1326
AgsI	TTSAA	9 cut(s)	41, 321, 382, 587, 697, 815, 980, 1044, 1375
AjnI	CCWGG	5 cut(s)	876, 996, 1004, 1030, 1109
AloI	GAACNNNNNNTCC	4 cut(s)	250, 282, 1000, 1032
Alw21I	GWGCWC	1 cut(s)	1309
Alw26I	GTCTC	8 cut(s)	351, 401, 446, 588, 775, 1054, 1254, 1592
AlwI	GGATC	7 cut(s)	390, 602, 615, 854, 1237, 1311, 1324
AlwNI	CAGNNNCTG	1 cut(s)	1282
AoxI	GGCC	2 cut(s)	419, 1028
ApeKI	GCWGC	5 cut(s)	44, 47, 64, 1094, 1217
ApoI	RAATTY	2 cut(s)	316, 725
Asp700I	GAANNNNTTC	1 cut(s)	1422
AspLEI	GCGC	2 cut(s)	285, 577
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	233, 1506
BaeGI	GKGCMC	2 cut(s)	959, 1507
BamHI	GGATCC	2 cut(s)	607, 1316
BanII	GRGCYC	1 cut(s)	1091
Bbv12I	GWGCWC	1 cut(s)	1309
BbvI	GCAGC	5 cut(s)	31, 34, 51, 1081, 1229
BccI	CCATC	8 cut(s)	14, 294, 353, 655, 871, 1108, 1476, 1489
BciT130I	CCWGG	5 cut(s)	878, 998, 1006, 1032, 1111
BclI	TGATCA	1 cut(s)	679
BcoDI	GTCTC	8 cut(s)	351, 401, 446, 588, 775, 1054, 1254, 1592
BfaI	CTAG	2 cut(s)	1293, 1472
BfmI	CTRYAG	3 cut(s)	579, 622, 1599
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	5 cut(s)	45, 48, 65, 1095, 1218
BlsI	GCNGC	5 cut(s)	46, 49, 66, 1096, 1219
BmcAI	AGTACT	2 cut(s)	106, 709
Bme1390I	CCNGG	5 cut(s)	878, 998, 1006, 1032, 1111
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	609, 1318
BmrFI	CCNGG	5 cut(s)	878, 998, 1006, 1032, 1111
BmrI	ACTGGG	2 cut(s)	180, 699
BmsI	GCATC	4 cut(s)	523, 1108, 1151, 1505
BmuI	ACTGGG	2 cut(s)	180, 699
BpmI	CTGGAG	2 cut(s)	980, 1120
Bpu10I	CCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	655
BsaI	GGTCTC	2 cut(s)	446, 1592
BsaJI	CCNNGG	2 cut(s)	254, 1109
BsaXI	ACNNNNNCTCC	4 cut(s)	443, 473, 1090, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	737, 1326
Bse1I	ACTGG	5 cut(s)	186, 611, 642, 705, 1246
Bse3DI	GCAATG	4 cut(s)	235, 279, 829, 847
BseBI	CCWGG	5 cut(s)	878, 998, 1006, 1032, 1111
BseDI	CCNNGG	2 cut(s)	254, 1109
BseGI	GGATG	3 cut(s)	863, 1119, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	737, 1326
BseMI	GCAATG	4 cut(s)	235, 279, 829, 847
BseMII	CTCAG	3 cut(s)	323, 333, 930
BseNI	ACTGG	5 cut(s)	186, 611, 642, 705, 1246
BseRI	GAGGAG	2 cut(s)	132, 191
BseSI	GKGCMC	2 cut(s)	959, 1507
BseXI	GCAGC	5 cut(s)	31, 34, 51, 1081, 1229
BseYI	CCCAGC	1 cut(s)	952
BsgI	GTGCAG	1 cut(s)	1236
BshFI	GGCC	2 cut(s)	421, 1030
BsiHKAI	GWGCWC	1 cut(s)	1309
BslI	CCNNNNNNNGG	2 cut(s)	737, 1326
BsmAI	GTCTC	8 cut(s)	351, 401, 446, 588, 775, 1054, 1254, 1592
BsmBI	CGTCTC	1 cut(s)	775
BsnI	GGCC	2 cut(s)	421, 1030
Bso31I	GGTCTC	2 cut(s)	446, 1592
Bsp1286I	GDGCHC	4 cut(s)	959, 1091, 1309, 1507
Bsp143I	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
BspANI	GGCC	2 cut(s)	421, 1030
BspCNI	CTCAG	3 cut(s)	324, 334, 929
BspLI	GGNNCC	2 cut(s)	609, 1318
BspMAI	CTGCAG	2 cut(s)	583, 1603
BspPI	GGATC	7 cut(s)	390, 602, 615, 854, 1237, 1311, 1324
BspTNI	GGTCTC	2 cut(s)	446, 1592
BsrDI	GCAATG	4 cut(s)	235, 279, 829, 847
BsrI	ACTGG	5 cut(s)	186, 611, 642, 705, 1246
BssECI	CCNNGG	2 cut(s)	254, 1109
BssMI	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
BssNAI	GTATAC	1 cut(s)	1488
Bst1107I	GTATAC	1 cut(s)	1488
Bst2UI	CCWGG	5 cut(s)	878, 998, 1006, 1032, 1111
Bst4CI	ACNGT	7 cut(s)	412, 569, 737, 819, 901, 1445, 1540
BstAPI	GCANNNNNTGC	1 cut(s)	901
BstBAI	YACGTR	1 cut(s)	655
BstC8I	GCNNGC	2 cut(s)	52, 579
BstDEI	CTNAG	8 cut(s)	136, 332, 342, 807, 916, 1062, 1437, 1580
BstF5I	GGATG	3 cut(s)	863, 1119, 1123
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	285, 577
BstKTI	GATC	9 cut(s)	398, 610, 682, 862, 1202, 1245, 1276, 1319, 1477
BstMAI	GTCTC	8 cut(s)	351, 401, 446, 588, 775, 1054, 1254, 1592
BstMBI	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
BstMWI	GCNNNNNNNGC	4 cut(s)	901, 1266, 1462, 1502
BstNI	CCWGG	5 cut(s)	878, 998, 1006, 1032, 1111
BstSCI	CCNGG	5 cut(s)	876, 996, 1004, 1030, 1109
BstSFI	CTRYAG	3 cut(s)	579, 622, 1599
BstSLI	GKGCMC	2 cut(s)	959, 1507
BstSNI	TACGTA	1 cut(s)	655
BstV1I	GCAGC	5 cut(s)	31, 34, 51, 1081, 1229
BstX2I	RGATCY	3 cut(s)	395, 607, 1316
BstYI	RGATCY	3 cut(s)	395, 607, 1316
BstZ17I	GTATAC	1 cut(s)	1488
BsuRI	GGCC	2 cut(s)	421, 1030
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	863, 1119, 1123
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	5 cut(s)	339, 742, 824, 906, 951
Cac8I	GCNNGC	2 cut(s)	52, 579
CaiI	CAGNNNCTG	1 cut(s)	1282
CfoI	GCGC	2 cut(s)	285, 577
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	105, 708, 1194
CviAII	CATG	5 cut(s)	375, 986, 1055, 1223, 1310
CviQI	GTAC	3 cut(s)	105, 708, 1194
DdeI	CTNAG	8 cut(s)	136, 332, 342, 807, 916, 1062, 1437, 1580
DpnI	GATC	9 cut(s)	397, 609, 681, 861, 1201, 1244, 1275, 1318, 1476
DpnII	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
DraIII	CACNNNGTG	1 cut(s)	1058
Eco105I	TACGTA	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	1091
Eco31I	GGTCTC	2 cut(s)	446, 1592
Eco57I	CTGAAG	2 cut(s)	528, 1436
EcoRII	CCWGG	5 cut(s)	876, 996, 1004, 1030, 1109
EcoT38I	GRGCYC	1 cut(s)	1091
Esp3I	CGTCTC	1 cut(s)	775
FaeI	CATG	5 cut(s)	378, 989, 1058, 1226, 1313
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	5 cut(s)	374, 985, 1054, 1222, 1309
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	2 cut(s)	1130, 1487
Fnu4HI	GCNGC	5 cut(s)	45, 48, 65, 1095, 1218
FokI	GGATG	3 cut(s)	850, 1126, 1130
FriOI	GRGCYC	1 cut(s)	1091
Fsp4HI	GCNGC	5 cut(s)	45, 48, 65, 1095, 1218
FspBI	CTAG	2 cut(s)	1293, 1472
GlaI	GCGC	2 cut(s)	284, 576
GluI	GCNGC	5 cut(s)	45, 48, 65, 1095, 1218
GsaI	CCCAGC	1 cut(s)	956
GsuI	CTGGAG	2 cut(s)	980, 1120
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	421, 1030
HhaI	GCGC	2 cut(s)	285, 577
Hin1II	CATG	5 cut(s)	378, 989, 1058, 1226, 1313
Hin6I	GCGC	2 cut(s)	283, 575
HinP1I	GCGC	2 cut(s)	283, 575
HincII	GTYRAC	3 cut(s)	850, 891, 1131
HindII	GTYRAC	3 cut(s)	850, 891, 1131
HindIII	AAGCTT	1 cut(s)	1529
HinfI	GANTC	8 cut(s)	344, 518, 557, 663, 755, 970, 1001, 1404
HpaI	GTTAAC	1 cut(s)	891
HphI	GGTGA	2 cut(s)	233, 1506
Hpy166II	GTNNAC	5 cut(s)	850, 891, 1076, 1131, 1488
Hpy188I	TCNGA	6 cut(s)	163, 258, 523, 868, 1264, 1321
Hpy188III	TCNNGA	3 cut(s)	1020, 1137, 1472
Hpy8I	GTNNAC	5 cut(s)	850, 891, 1076, 1131, 1488
HpyAV	CCTTC	3 cut(s)	76, 653, 1307
HpyCH4III	ACNGT	7 cut(s)	412, 569, 737, 819, 901, 1445, 1540
HpyCH4IV	ACGT	2 cut(s)	654, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	901, 1266, 1462, 1502
HpyF3I	CTNAG	8 cut(s)	136, 332, 342, 807, 916, 1062, 1437, 1580
HpySE526I	ACGT	2 cut(s)	654, 768
Hsp92II	CATG	5 cut(s)	378, 989, 1058, 1226, 1313
HspAI	GCGC	2 cut(s)	283, 575
Ksp22I	TGATCA	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	891
Kzo9I	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
LmnI	GCTCC	6 cut(s)	119, 178, 641, 949, 999, 1470
Lsp1109I	GCAGC	5 cut(s)	31, 34, 51, 1081, 1229
LweI	GCATC	4 cut(s)	523, 1108, 1151, 1505
MaeI	CTAG	2 cut(s)	1293, 1472
MaeII	ACGT	2 cut(s)	654, 768
MaeIII	GTNAC	3 cut(s)	221, 1278, 1540
MalI	GATC	9 cut(s)	397, 609, 681, 861, 1201, 1244, 1275, 1318, 1476
MboI	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
MflI	RGATCY	3 cut(s)	395, 607, 1316
MhlI	GDGCHC	4 cut(s)	959, 1091, 1309, 1507
MluCI	AATT	6 cut(s)	98, 195, 316, 602, 725, 939
MlyI	GAGTC	4 cut(s)	353, 566, 749, 979
MmeI	TCCRAC	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	1422
MseI	TTAA	5 cut(s)	198, 872, 890, 1344, 1362
MspA1I	CMGCKG	1 cut(s)	910
MspR9I	CCNGG	5 cut(s)	878, 998, 1006, 1032, 1111
MvaI	CCWGG	5 cut(s)	878, 998, 1006, 1032, 1111
MwoI	GCNNNNNNNGC	4 cut(s)	901, 1266, 1462, 1502
NdeII	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
NlaIII	CATG	5 cut(s)	378, 989, 1058, 1226, 1313
NlaIV	GGNNCC	2 cut(s)	609, 1318
NmuCI	GTSAC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	1422
PfeI	GAWTC	4 cut(s)	518, 663, 1001, 1404
PfoI	TCCNGGA	2 cut(s)	996, 1004
PkrI	GCNGC	5 cut(s)	46, 49, 66, 1096, 1219
PleI	GAGTC	4 cut(s)	352, 565, 749, 978
PpsI	GAGTC	4 cut(s)	352, 565, 749, 978
Ppu21I	YACGTR	1 cut(s)	655
Psp6I	CCWGG	5 cut(s)	876, 996, 1004, 1030, 1109
PspFI	CCCAGC	1 cut(s)	952
PspGI	CCWGG	5 cut(s)	876, 996, 1004, 1030, 1109
PspN4I	GGNNCC	2 cut(s)	609, 1318
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	2 cut(s)	583, 1603
PstNI	CAGNNNCTG	1 cut(s)	1282
PsuI	RGATCY	3 cut(s)	395, 607, 1316
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	3 cut(s)	106, 709, 1195
RsaNI	GTAC	3 cut(s)	105, 708, 1194
SalI	GTCGAC	1 cut(s)	1129
SaqAI	TTAA	5 cut(s)	198, 872, 890, 1344, 1362
SatI	GCNGC	5 cut(s)	45, 48, 65, 1095, 1218
Sau3AI	GATC	9 cut(s)	395, 607, 679, 859, 1199, 1242, 1273, 1316, 1474
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	2 cut(s)	106, 709
SchI	GAGTC	4 cut(s)	353, 566, 749, 979
ScrFI	CCNGG	5 cut(s)	878, 998, 1006, 1032, 1111
SduI	GDGCHC	4 cut(s)	959, 1091, 1309, 1507
SfaNI	GCATC	4 cut(s)	523, 1108, 1151, 1505
SfcI	CTRYAG	3 cut(s)	579, 622, 1599
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SnaBI	TACGTA	1 cut(s)	655
Sse9I	AATT	6 cut(s)	98, 195, 316, 602, 725, 939
SspMI	CTAG	2 cut(s)	1293, 1472
StyD4I	CCNGG	5 cut(s)	876, 996, 1004, 1030, 1109
TaaI	ACNGT	7 cut(s)	412, 569, 737, 819, 901, 1445, 1540
TaiI	ACGT	2 cut(s)	657, 771
TaqI	TCGA	4 cut(s)	77, 131, 758, 1130
TasI	AATT	6 cut(s)	98, 195, 316, 602, 725, 939
TatI	WGTACW	2 cut(s)	104, 707
TfiI	GAWTC	4 cut(s)	518, 663, 1001, 1404
Tru1I	TTAA	5 cut(s)	198, 872, 890, 1344, 1362
Tru9I	TTAA	5 cut(s)	198, 872, 890, 1344, 1362
TscAI	CASTG	5 cut(s)	346, 742, 824, 906, 951
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	5 cut(s)	44, 47, 64, 1094, 1217
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	7 cut(s)	227, 290, 507, 840, 1193, 1326, 1446
TspGWI	ACGGA	2 cut(s)	294, 845
TspRI	CASTG	5 cut(s)	346, 742, 824, 906, 951
XapI	RAATTY	2 cut(s)	316, 725
XbaI	TCTAGA	1 cut(s)	1471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	2 cut(s)	1130, 1487
XmnI	GAANNNNTTC	1 cut(s)	1422
XspI	CTAG	2 cut(s)	1293, 1472
ZrmI	AGTACT	2 cut(s)	106, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.