Rmu_ssc0000460.1_g000006

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000460.1
Physical Location & Seq
Reverse (-)
26839 .. 30873
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000460.1_g000006.1.cds

Sequence Viewer

Length: 2271 bp
atggacaagcagctagctcgtcgtggacgcaagctcttctccgctgctggtggcgactttgtgctgcttgagaaatccaagaaggagaggattaggaaattgagtactattggtggaggagcgacttgtccgagcttagaaatgggctgtcatgtgtctcatacagaagatgaggaggagcttcccagtaagagaattaagctacccagaaagtctttgggcgacgacagcaatggcggcgttcatctagcctctgtgcctcggaaactgcgttcagcaatgaagaagcgccatcgtcaatctacatctccgtctttatcaaattcaaggaagctactgagtggcactgagtctctcaactgcgatggcgtaaagaagccatgcttgaaacaaggagatagatcccctaaagagactgtttctgggcctatcacaaaagatgaggaagaagttgtcgagaccttgtatgctttggctggattggtgttccccaacaatgaagcaaatggtaatggcaaagtagaatctgaaactatagatgcaaatgcttcagctttgccagagtcaaagaacagtcctgcgcctgcagttgaagttggagacatcaaattggatccagttttcccctgtagagctaccagctccaccagtccatcttacgtagaaggattcactaaaggaactgatcaagttgatttattgaacaatcccagtactcattatcagcctgaatttcccaacagtggcacactctgtatagactcgaataataacgtctctcataatcaaataaacatttcttccttgtcagctaaggttgaacagtgcaatgaaaagcatttcagcaatgctgtcaacttccatgatccatccgagttaagcctggatagtcggttaacgcagacagtgcaacagctgacctcagttttcagtagaaaaccagaaattgcagtggagctgggcacgaacattgggagtcaagttcaaaaacatgatatgctccaggaatccaggaagaaaggttcaggattgtggcctggcttggcttcaaatgtctcacatggtgctaagagtgatagtccacttttgcaaagccctgctgctacaatgcctccctggatggatgctgctttgtcgacctccagagcatcaatccaaaatggttcttcttttgcaaaggttacgaaagttgtcaatggtacaagatcgtgtaagaaatgtgcagctcatgtctatataagtcatttgatccagtctctaaaaagctctgacagcaaagatcagttactgctacaaccttgtcaaatgagagcacatgaaggatccgaacaaggggcttttttgggagttaatacctatactaatgttaaaagtggtttcaatgaggttgtttccagcagtagcataagaatctctactgctgaaaaagttccaaatgaagctaagaacggtattcttcagcacaagatgctccgtctagatcagccatcgtatactttggcatctggggcacacacgtcaccaaaacagatttttgatttcctttcattgtcagctggaggtggtagctcaggaaataatgatagttttagtagaagtagatatgcgatggagccgtcgtcagaagcccaagttccttatcttcattctcctgtgcagcatcacaatctcattcctttccctttgacccgatctcgctacaactcttctgcttcccttgacagtcacccaccagtggcacagcagggccagctgctaccttcatatagcaacccattctgtgtttctcaagcaaatgtcacagccttgacaaaacaaccaatacaacagcaaaaattacatctgcagcagcagcagcagcagcagcaacaacagtttcatctgcagcagcatcagcaacaacaattacatctgcagcagcaacagcaaaggctttgggcagctcagttcgcggctcagtacaggccagcgggaactctggcagccacagctccctctccgagctggcaaaatataaagcaggagaactgtacactgaatcaatgtggccaagctctcctttctccttccccttcaacacttgaactagttggtcccaagtatgcaccactatctcatcatcagcagcaacaaatggcagtcacttcttttcctcccgacagggtaaaacggtcagaccaccatctgccatctgtgtatgaggagtctgtaggcgggtaccgtgctgcgagtgcactgccattgcagttgctctgcaatgagcgcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

756

Amino Acids

82.43

Weight (kDa)

8.93

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2217
AccB1I GGYRCC 1 cut(s) 2217
AccI GTMKAC 2 cut(s) 1136, 1493
AccII CGCG 1 cut(s) 1952
AciI CCGC 5 cut(s) 42, 237, 1952, 1970, 2214
AclWI GGATC 7 cut(s) 396, 608, 621, 860, 1243, 1317, 1330
AcoI YGGCCR 1 cut(s) 2047
AcsI RAATTY 2 cut(s) 322, 731
AcuI CTGAAG 2 cut(s) 534, 1442
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 6 cut(s) 106, 715, 1201, 1961, 2032, 2219
AfiI CCNNNNNNNGG 3 cut(s) 743, 1332, 1735
AflIII ACRYGT 1 cut(s) 1515
AhlI ACTAGT 1 cut(s) 2086
AjiI CACGTC 1 cut(s) 1518
AjnI CCWGG 5 cut(s) 882, 1002, 1010, 1036, 1115
AloI GAACNNNNNNTCC 4 cut(s) 256, 288, 1006, 1038
Alw21I GWGCWC 2 cut(s) 1315, 2236
Alw26I GTCTC 8 cut(s) 162, 357, 407, 452, 594, 781, 1060, 1260
Alw44I GTGCAC 1 cut(s) 2232
AlwI GGATC 7 cut(s) 396, 608, 621, 860, 1243, 1317, 1330
AlwNI CAGNNNCTG 1 cut(s) 1288
AoxI GGCC 5 cut(s) 425, 1034, 1747, 1964, 2047
ApaLI GTGCAC 1 cut(s) 2232
ApoI RAATTY 2 cut(s) 322, 731
Asp700I GAANNNNTTC 1 cut(s) 1428
Asp718I GGTACC 1 cut(s) 2217
AspLEI GCGC 3 cut(s) 291, 583, 2265
AspS9I GGNCC 3 cut(s) 425, 1747, 2093
AsuHPI GGTGA 2 cut(s) 1512, 1718
AsuNHI GCTAGC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 2093
BaeGI GKGCMC 3 cut(s) 965, 1513, 2236
BalI TGGCCA 1 cut(s) 2049
BamHI GGATCC 2 cut(s) 613, 1322
BanI GGYRCC 1 cut(s) 2217
Bbv12I GWGCWC 2 cut(s) 1315, 2236
BccI CCATC 9 cut(s) 300, 359, 661, 877, 1114, 1495, 1603, 2190, 2197
BceAI ACGGC 1 cut(s) 1600
BcgI CGANNNNNNTGC 3 cut(s) 33, 2218, 2252
BciT130I CCWGG 5 cut(s) 884, 1004, 1012, 1038, 1117
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 8 cut(s) 162, 357, 407, 452, 594, 781, 1060, 1260
BcuI ACTAGT 1 cut(s) 2086
BfaI CTAG 4 cut(s) 14, 248, 1478, 2087
BfmI CTRYAG 7 cut(s) 534, 585, 628, 1844, 1883, 1913, 2208
BfoI RGCGCY 2 cut(s) 292, 2266
BmcAI AGTACT 2 cut(s) 106, 715
Bme1390I CCNGG 5 cut(s) 884, 1004, 1012, 1038, 1117
Bme18I GGWCC 1 cut(s) 2093
BmgBI CACGTC 1 cut(s) 1518
BmgT120I GGNCC 3 cut(s) 425, 1747, 2093
BmiI GGNNCC 5 cut(s) 615, 1324, 1614, 2095, 2219
BmrFI CCNGG 5 cut(s) 884, 1004, 1012, 1038, 1117
BmrI ACTGGG 2 cut(s) 180, 705
BmsI GCATC 7 cut(s) 529, 1114, 1157, 1458, 1511, 1669, 1900
BmtI GCTAGC 1 cut(s) 17
BmuI ACTGGG 2 cut(s) 180, 705
BpmI CTGGAG 3 cut(s) 986, 1126, 1578
Bpu10I CCTNAGC 2 cut(s) 813, 1570
BpuEI CTTGAG 2 cut(s) 89, 1773
BsaAI YACGTR 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 260, 1115
BsaXI ACNNNNNCTCC 4 cut(s) 1096, 1126, 1604, 1634
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 1332, 1735
Bse1I ACTGG 6 cut(s) 186, 617, 648, 711, 1252, 1733
Bse3DI GCAATG 6 cut(s) 238, 285, 835, 853, 2240, 2263
BseBI CCWGG 5 cut(s) 884, 1004, 1012, 1038, 1117
BseDI CCNNGG 2 cut(s) 260, 1115
BseGI GGATG 3 cut(s) 869, 1125, 1129
BseLI CCNNNNNNNGG 3 cut(s) 743, 1332, 1735
BseMI GCAATG 6 cut(s) 238, 285, 835, 853, 2240, 2263
BseMII CTCAG 6 cut(s) 329, 339, 936, 1584, 1958, 1970
BseNI ACTGG 6 cut(s) 186, 617, 648, 711, 1252, 1733
BseRI GAGGAG 4 cut(s) 132, 188, 191, 2216
BseSI GKGCMC 3 cut(s) 965, 1513, 2236
BseYI CCCAGC 1 cut(s) 958
BsgI GTGCAG 2 cut(s) 1242, 1676
Bsh1236I CGCG 1 cut(s) 1952
BshFI GGCC 5 cut(s) 427, 1036, 1749, 1966, 2049
BshNI GGYRCC 1 cut(s) 2217
BsiHKAI GWGCWC 2 cut(s) 1315, 2236
BslFI GGGAC 1 cut(s) 2079
BslI CCNNNNNNNGG 3 cut(s) 743, 1332, 1735
BsmAI GTCTC 8 cut(s) 162, 357, 407, 452, 594, 781, 1060, 1260
BsmBI CGTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 2079
BsnI GGCC 5 cut(s) 427, 1036, 1749, 1966, 2049
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 4 cut(s) 965, 1315, 1513, 2236
Bsp1407I TGTACA 1 cut(s) 2030
BspACI CCGC 5 cut(s) 42, 237, 1952, 1970, 2214
BspANI GGCC 5 cut(s) 427, 1036, 1749, 1966, 2049
BspCNI CTCAG 6 cut(s) 330, 340, 935, 1583, 1957, 1969
BspFNI CGCG 1 cut(s) 1952
BspLI GGNNCC 5 cut(s) 615, 1324, 1614, 2095, 2219
BspMAI CTGCAG 4 cut(s) 589, 1848, 1887, 1917
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 7 cut(s) 396, 608, 621, 860, 1243, 1317, 1330
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 2217
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 6 cut(s) 238, 285, 835, 853, 2240, 2263
BsrGI TGTACA 1 cut(s) 2030
BsrI ACTGG 6 cut(s) 186, 617, 648, 711, 1252, 1733
BssECI CCNNGG 2 cut(s) 260, 1115
BssNAI GTATAC 1 cut(s) 1494
Bst1107I GTATAC 1 cut(s) 1494
Bst2UI CCWGG 5 cut(s) 884, 1004, 1012, 1038, 1117
Bst6I CTCTTC 2 cut(s) 41, 1711
BstAPI GCANNNNNTGC 2 cut(s) 907, 1468
BstAUI TGTACA 1 cut(s) 2030
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 6 cut(s) 15, 32, 585, 1751, 1968, 2006
BstF5I GGATG 3 cut(s) 869, 1125, 1129
BstFNI CGCG 1 cut(s) 1952
BstH2I RGCGCY 2 cut(s) 292, 2266
BstHHI GCGC 3 cut(s) 291, 583, 2265
BstMAI GTCTC 8 cut(s) 162, 357, 407, 452, 594, 781, 1060, 1260
BstNI CCWGG 5 cut(s) 884, 1004, 1012, 1038, 1117
BstSCI CCNGG 5 cut(s) 882, 1002, 1010, 1036, 1115
BstSFI CTRYAG 7 cut(s) 534, 585, 628, 1844, 1883, 1913, 2208
BstSLI GKGCMC 3 cut(s) 965, 1513, 2236
BstSNI TACGTA 1 cut(s) 661
BstUI CGCG 1 cut(s) 1952
BstX2I RGATCY 3 cut(s) 401, 613, 1322
BstYI RGATCY 3 cut(s) 401, 613, 1322
BstZ17I GTATAC 1 cut(s) 1494
BsuRI GGCC 5 cut(s) 427, 1036, 1749, 1966, 2049
BtgZI GCGATG 2 cut(s) 378, 1622
BtrI CACGTC 1 cut(s) 1518
BtsCI GGATG 3 cut(s) 869, 1125, 1129
BtsI GCAGTG 2 cut(s) 957, 2234
BtsIMutI CAGTG 8 cut(s) 345, 748, 830, 912, 957, 1740, 2033, 2234
Cac8I GCNNGC 6 cut(s) 15, 32, 585, 1751, 1968, 2006
CaiI CAGNNNCTG 1 cut(s) 1288
CfoI GCGC 3 cut(s) 291, 583, 2265
Cfr13I GGNCC 3 cut(s) 425, 1747, 2093
CseI GACGC 1 cut(s) 36
Csp6I GTAC 6 cut(s) 105, 714, 1200, 1960, 2031, 2218
CviAII CATG 7 cut(s) 152, 381, 863, 992, 1061, 1229, 1316
CviQI GTAC 6 cut(s) 105, 714, 1200, 1960, 2031, 2218
DraIII CACNNNGTG 1 cut(s) 1064
EaeI YGGCCR 1 cut(s) 2047
Eam1104I CTCTTC 2 cut(s) 41, 1711
EarI CTCTTC 2 cut(s) 41, 1711
Eco105I TACGTA 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 2093
Eco57I CTGAAG 2 cut(s) 534, 1442
EcoRII CCWGG 5 cut(s) 882, 1002, 1010, 1036, 1115
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 7 cut(s) 155, 384, 866, 995, 1064, 1232, 1319
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 2043, 2075
FaqI GGGAC 1 cut(s) 2079
FatI CATG 7 cut(s) 151, 380, 862, 991, 1060, 1228, 1315
FauI CCCGC 2 cut(s) 1963, 2207
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 2 cut(s) 1136, 1493
FokI GGATG 3 cut(s) 856, 1132, 1136
FspBI CTAG 4 cut(s) 14, 248, 1478, 2087
GlaI GCGC 3 cut(s) 290, 582, 2264
GsaI CCCAGC 1 cut(s) 962
GsuI CTGGAG 3 cut(s) 986, 1126, 1578
HaeII RGCGCY 2 cut(s) 292, 2266
HaeIII GGCC 5 cut(s) 427, 1036, 1749, 1966, 2049
HgaI GACGC 1 cut(s) 36
HhaI GCGC 3 cut(s) 291, 583, 2265
Hin1II CATG 7 cut(s) 155, 384, 866, 995, 1064, 1232, 1319
Hin6I GCGC 3 cut(s) 289, 581, 2263
HinP1I GCGC 3 cut(s) 289, 581, 2263
HincII GTYRAC 3 cut(s) 856, 897, 1137
HindII GTYRAC 3 cut(s) 856, 897, 1137
HpaI GTTAAC 1 cut(s) 897
HphI GGTGA 2 cut(s) 1512, 1718
Hpy166II GTNNAC 8 cut(s) 26, 856, 897, 1082, 1137, 1494, 2033, 2234
Hpy188III TCNNGA 6 cut(s) 457, 1026, 1143, 1478, 1572, 2156
Hpy8I GTNNAC 8 cut(s) 26, 856, 897, 1082, 1137, 1494, 2033, 2234
Hpy99I CGWCG 3 cut(s) 24, 227, 1621
HpyAV CCTTC 6 cut(s) 76, 659, 1313, 1770, 2076, 2082
HpyCH4IV ACGT 3 cut(s) 660, 774, 1517
HpySE526I ACGT 3 cut(s) 660, 774, 1517
Hsp92II CATG 7 cut(s) 155, 384, 866, 995, 1064, 1232, 1319
HspAI GCGC 3 cut(s) 289, 581, 2263
KpnI GGTACC 1 cut(s) 2221
Ksp22I TGATCA 1 cut(s) 685
KspAI GTTAAC 1 cut(s) 897
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 8 cut(s) 119, 178, 647, 955, 1005, 1476, 1612, 1996
LweI GCATC 7 cut(s) 529, 1114, 1157, 1458, 1511, 1669, 1900
MaeI CTAG 4 cut(s) 14, 248, 1478, 2087
MaeII ACGT 3 cut(s) 660, 774, 1517
MaeIII GTNAC 6 cut(s) 1180, 1284, 1518, 1724, 1798, 2140
MflI RGATCY 3 cut(s) 401, 613, 1322
MhlI GDGCHC 4 cut(s) 965, 1315, 1513, 2236
MlsI TGGCCA 1 cut(s) 2049
MluCI AATT 8 cut(s) 98, 195, 322, 608, 731, 945, 1835, 1904
MluNI TGGCCA 1 cut(s) 2049
MlyI GAGTC 5 cut(s) 359, 572, 755, 985, 2213
MmeI TCCRAC 1 cut(s) 577
Mox20I TGGCCA 1 cut(s) 2049
MroXI GAANNNNTTC 1 cut(s) 1428
MscI TGGCCA 1 cut(s) 2049
MseI TTAA 5 cut(s) 198, 878, 896, 1350, 1368
Msp20I TGGCCA 1 cut(s) 2049
MspA1I CMGCKG 5 cut(s) 44, 916, 1556, 1753, 1970
MspR9I CCNGG 5 cut(s) 884, 1004, 1012, 1038, 1117
MvaI CCWGG 5 cut(s) 884, 1004, 1012, 1038, 1117
MvnI CGCG 1 cut(s) 1952
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 7 cut(s) 155, 384, 866, 995, 1064, 1232, 1319
NlaIV GGNNCC 5 cut(s) 615, 1324, 1614, 2095, 2219
NmuCI GTSAC 4 cut(s) 1518, 1724, 1798, 2140
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 5 cut(s) 524, 669, 1007, 1410, 2038
PfoI TCCNGGA 2 cut(s) 1002, 1010
PleI GAGTC 5 cut(s) 358, 571, 755, 984, 2212
PpsI GAGTC 5 cut(s) 358, 571, 755, 984, 2212
Ppu21I YACGTR 1 cut(s) 661
Psp6I CCWGG 5 cut(s) 882, 1002, 1010, 1036, 1115
PspFI CCCAGC 1 cut(s) 958
PspGI CCWGG 5 cut(s) 882, 1002, 1010, 1036, 1115
PspN4I GGNNCC 5 cut(s) 615, 1324, 1614, 2095, 2219
PspPI GGNCC 3 cut(s) 425, 1747, 2093
PstI CTGCAG 4 cut(s) 589, 1848, 1887, 1917
PstNI CAGNNNCTG 1 cut(s) 1288
PsuI RGATCY 3 cut(s) 401, 613, 1322
PvuII CAGCTG 3 cut(s) 916, 1556, 1753
RsaI GTAC 6 cut(s) 106, 715, 1201, 1961, 2032, 2219
RsaNI GTAC 6 cut(s) 105, 714, 1200, 1960, 2031, 2218
SalI GTCGAC 1 cut(s) 1135
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 5 cut(s) 198, 878, 896, 1350, 1368
Sau96I GGNCC 3 cut(s) 425, 1747, 2093
ScaI AGTACT 2 cut(s) 106, 715
SchI GAGTC 5 cut(s) 359, 572, 755, 985, 2213
ScrFI CCNGG 5 cut(s) 884, 1004, 1012, 1038, 1117
SduI GDGCHC 4 cut(s) 965, 1315, 1513, 2236
SfaNI GCATC 7 cut(s) 529, 1114, 1157, 1458, 1511, 1669, 1900
SfcI CTRYAG 7 cut(s) 534, 585, 628, 1844, 1883, 1913, 2208
SinI GGWCC 1 cut(s) 2093
SmlI CTYRAG 2 cut(s) 68, 1788
SmoI CTYRAG 2 cut(s) 68, 1788
SnaBI TACGTA 1 cut(s) 661
SpeI ACTAGT 1 cut(s) 2086
Sse9I AATT 8 cut(s) 98, 195, 322, 608, 731, 945, 1835, 1904
SsiI CCGC 5 cut(s) 42, 237, 1952, 1970, 2214
SspMI CTAG 4 cut(s) 14, 248, 1478, 2087
StyD4I CCNGG 5 cut(s) 882, 1002, 1010, 1036, 1115
TaiI ACGT 3 cut(s) 663, 777, 1520
TaqI TCGA 3 cut(s) 456, 764, 1136
TasI AATT 8 cut(s) 98, 195, 322, 608, 731, 945, 1835, 1904
TatI WGTACW 4 cut(s) 104, 713, 1959, 2030
TauI GCSGC 2 cut(s) 240, 1955
TfiI GAWTC 5 cut(s) 524, 669, 1007, 1410, 2038
Tru1I TTAA 5 cut(s) 198, 878, 896, 1350, 1368
Tru9I TTAA 5 cut(s) 198, 878, 896, 1350, 1368
TscAI CASTG 8 cut(s) 352, 748, 830, 912, 957, 1740, 2040, 2241
TseFI GTSAC 4 cut(s) 1518, 1724, 1798, 2140
Tsp45I GTSAC 4 cut(s) 1518, 1724, 1798, 2140
TspGWI ACGGA 2 cut(s) 300, 1463
TspRI CASTG 8 cut(s) 352, 748, 830, 912, 957, 1740, 2040, 2241
VneI GTGCAC 1 cut(s) 2232
VpaK11BI GGWCC 1 cut(s) 2093
XapI RAATTY 2 cut(s) 322, 731
XbaI TCTAGA 1 cut(s) 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 2 cut(s) 1136, 1493
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 4 cut(s) 14, 248, 1478, 2087
ZrmI AGTACT 2 cut(s) 106, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.