Rh6CG443000

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
62179582 .. 62184760
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG443000.1

Sequence Viewer

Length: 1674 bp
ATGGCACTTGTCTTTATCTGTGTAGTCTTCTTCTTGTGTGTTTCTGATAAGGGGCCATGTCCATCACCTTTCTTCTTCTTCTTTTCGGTTTTTGAAGGTGCTGGTGGCGACTTTGTGCTGCTTGAGAAATCGAAGAAGGAGAGGATTAGGAAATTGAGTACTATTGGTGGAGGAGCGACTTGTTCGAGCTTAGAAATGGGCTGTGATGTGTCTCATAGAGAAGATGAGGAGGAGCTTCCCAGTAAGAGAATTAAGCTACCCAGAAAGTCTATGGGCGACAGCAATGGCAGCGTTCATCTAGCCTCTGTGCCTCGGAAACTGCGTTCAGCAATGAAGAAGCGCCATCGTCAATCTACATCTCCGTCTTTATCAAATTCAAGGAAGCTACTGAGTGGCACTGAGTCTCTCAACTGCGATGGCGTAAAGAAGCCACGCTTGAAACAAGGAGATAGATCCCCTAAAGAGACTGTTTCTGGGCCCATCACAAAAGATGAGGAAGAAGTTGTGGAGACCTTGTATGCTTTGGCTGGATTGGTGTTCCCCAACAATGAAGCAAATGGTAATGGCAAAGTAGAATCTGAAACTTTAGATGCAAATGCTTCAGCTTTGCCAGAGTCAAAGAACAGTCCTAGTCCTGCGCCTGCAGTTGAAGTTGGAGACATCAAATTGGATCCAGTTTTCCCCTGTAGAGCTACCAGCTCCACCAGTCCATCTTACGTAGAAGGATTCACTAAAGGAACTGATCAAGTTGATTTATTGAATAATCCCAGTACTCATTATCAGCCTGAATTTCCCAACAGTGGCACACTCTGTATAGACTCTAATAATAACGTCTCTCATAATCAAATAAACATTTCTTCCTTGTCAGCTAAGGTTGAACAGTGCAATGAAAAGCATTTCAGCAATGCTGTCAACTTCCGTGATCCATCCGAGTTAAGCCTGGATAGTCGGTTAACGCAGACAGTGCAACAGCTGACCTCAGTTTTCAGTAGAAAATCAGAAATTGCAGTGGAGCTGGGCACGAACATTGGGAGTCAAGTTCAAAAACATTATATGCTCCAGGAATCCAGGAAGAAAGGTTCAGGATTGTGGCCTGGCTTGGCTTCAAATGTCTCACATGGTGCTAAGAGTGATAGTCCACTTTTGCAGAGCCCTCCTGCTACAATGCCTCCCTGGATGGATGCTGCTTTGTCGACCTCCAGAGCATCAATCCAAAATGGTTCTTCTTTTGCAAAGGTTACGAAAGTTGTCAATGGTACAAGATCGTGTAAGAAATGTGCAGCTCATGTCTATATAAGTCATTTGATCCAGTCTCTAAAAAGCTCTGACAGCAAAGATCAGTTACTGCTACAACCTTGTCAAATGAGAGCACATGAAGGATCCGAACAAGGGGCTTTTTTGGGAGTTAATACCTATACTCATGTTAAAAGTGGTTTCAATGAGGTTGTTTCCAGCAGTAGCATAAGAATCTCTACTGCTGAAAAAGTTCCAAATGAAGCTAAGAACGGTATTCTTCAGCACAAGAAGCTCCGTCTAGATCAGCCATCGTATACTTTGGCATCTGGGGCACACACGTCACCAAAACAGGTCAAGCTTGATACTGTAACTGCCATAGGTTTATGGCTTATGCTGTTCTCACTTCTTAGTGGTCTCTTGTTTCCTGCAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

60.31

Weight (kDa)

8.76

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1193, 1550
AclWI GGATC 7 cut(s) 447, 665, 678, 917, 1300, 1374, 1387
AcsI RAATTY 2 cut(s) 373, 788
AcuI CTGAAG 2 cut(s) 585, 1499
AdeI CACNNNGTG 1 cut(s) 1121
AfaI GTAC 3 cut(s) 160, 772, 1258
AfiI CCNNNNNNNGG 2 cut(s) 800, 1389
AflIII ACRYGT 1 cut(s) 1572
AgsI TTSAA 9 cut(s) 95, 378, 439, 650, 760, 878, 1043, 1107, 1438
AjiI CACGTC 1 cut(s) 1575
AjnI CCWGG 5 cut(s) 939, 1059, 1067, 1093, 1172
AloI GAACNNNNNNTCC 4 cut(s) 307, 339, 1063, 1095
Alw21I GWGCWC 1 cut(s) 1372
Alw26I GTCTC 9 cut(s) 216, 408, 458, 503, 651, 838, 1117, 1317, 1655
AlwI GGATC 7 cut(s) 447, 665, 678, 917, 1300, 1374, 1387
AlwNI CAGNNNCTG 1 cut(s) 1345
AoxI GGCC 3 cut(s) 53, 476, 1091
ApaI GGGCCC 1 cut(s) 480
ApeKI GCWGC 4 cut(s) 118, 288, 1184, 1280
ApoI RAATTY 2 cut(s) 373, 788
Asp700I GAANNNNTTC 1 cut(s) 1485
AspLEI GCGC 2 cut(s) 342, 640
AspS9I GGNCC 3 cut(s) 53, 476, 477
AsuHPI GGTGA 2 cut(s) 57, 1569
BaeGI GKGCMC 3 cut(s) 480, 1022, 1570
BamHI GGATCC 2 cut(s) 670, 1379
BanII GRGCYC 2 cut(s) 480, 1154
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 1372
BbvI GCAGC 4 cut(s) 105, 300, 1171, 1292
BccI CCATC 8 cut(s) 70, 351, 410, 488, 718, 934, 1171, 1552
BciT130I CCWGG 5 cut(s) 941, 1061, 1069, 1095, 1174
BclI TGATCA 1 cut(s) 742
BcoDI GTCTC 9 cut(s) 216, 408, 458, 503, 651, 838, 1117, 1317, 1655
BfaI CTAG 3 cut(s) 299, 630, 1535
BfmI CTRYAG 3 cut(s) 642, 685, 1662
BfoI RGCGCY 1 cut(s) 343
BisI GCNGC 4 cut(s) 119, 289, 1185, 1281
BlsI GCNGC 4 cut(s) 120, 290, 1186, 1282
BmcAI AGTACT 2 cut(s) 160, 772
Bme1390I CCNGG 5 cut(s) 941, 1061, 1069, 1095, 1174
BmgBI CACGTC 1 cut(s) 1575
BmgT120I GGNCC 3 cut(s) 53, 476, 477
BmiI GGNNCC 4 cut(s) 54, 478, 672, 1381
BmrFI CCNGG 5 cut(s) 941, 1061, 1069, 1095, 1174
BmrI ACTGGG 2 cut(s) 234, 762
BmsI GCATC 4 cut(s) 580, 1171, 1214, 1568
BmuI ACTGGG 2 cut(s) 234, 762
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 2 cut(s) 1043, 1183
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 718
BsaI GGTCTC 2 cut(s) 503, 1655
BsaJI CCNNGG 2 cut(s) 311, 1172
BsaXI ACNNNNNCTCC 4 cut(s) 500, 530, 1153, 1183
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 1389
Bse1I ACTGG 5 cut(s) 240, 674, 705, 768, 1309
Bse3DI GCAATG 4 cut(s) 289, 336, 892, 910
BseBI CCWGG 5 cut(s) 941, 1061, 1069, 1095, 1174
BseDI CCNNGG 2 cut(s) 311, 1172
BseGI GGATG 3 cut(s) 926, 1182, 1186
BseLI CCNNNNNNNGG 2 cut(s) 800, 1389
BseMI GCAATG 4 cut(s) 289, 336, 892, 910
BseMII CTCAG 3 cut(s) 380, 390, 993
BseNI ACTGG 5 cut(s) 240, 674, 705, 768, 1309
BseRI GAGGAG 3 cut(s) 186, 242, 245
BseSI GKGCMC 3 cut(s) 480, 1022, 1570
BseXI GCAGC 4 cut(s) 105, 300, 1171, 1292
BseYI CCCAGC 1 cut(s) 1015
BsgI GTGCAG 1 cut(s) 1299
BshFI GGCC 3 cut(s) 55, 478, 1093
BsiHKAI GWGCWC 1 cut(s) 1372
BslI CCNNNNNNNGG 2 cut(s) 800, 1389
BsmAI GTCTC 9 cut(s) 216, 408, 458, 503, 651, 838, 1117, 1317, 1655
BsmBI CGTCTC 1 cut(s) 838
BsnI GGCC 3 cut(s) 55, 478, 1093
Bso31I GGTCTC 2 cut(s) 503, 1655
Bsp120I GGGCCC 1 cut(s) 476
Bsp1286I GDGCHC 5 cut(s) 480, 1022, 1154, 1372, 1570
Bsp143I GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
BspANI GGCC 3 cut(s) 55, 478, 1093
BspCNI CTCAG 3 cut(s) 381, 391, 992
BspLI GGNNCC 4 cut(s) 54, 478, 672, 1381
BspMAI CTGCAG 2 cut(s) 646, 1666
BspPI GGATC 7 cut(s) 447, 665, 678, 917, 1300, 1374, 1387
BspTNI GGTCTC 2 cut(s) 503, 1655
BsrDI GCAATG 4 cut(s) 289, 336, 892, 910
BsrI ACTGG 5 cut(s) 240, 674, 705, 768, 1309
BssECI CCNNGG 2 cut(s) 311, 1172
BssMI GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
BssNAI GTATAC 1 cut(s) 1551
Bst1107I GTATAC 1 cut(s) 1551
Bst2UI CCWGG 5 cut(s) 941, 1061, 1069, 1095, 1174
Bst4CI ACNGT 7 cut(s) 469, 626, 800, 882, 964, 1508, 1603
BstAPI GCANNNNNTGC 1 cut(s) 964
BstBAI YACGTR 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 8 cut(s) 190, 389, 399, 870, 979, 1125, 1500, 1643
BstF5I GGATG 3 cut(s) 926, 1182, 1186
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 640
BstKTI GATC 9 cut(s) 455, 673, 745, 925, 1265, 1308, 1339, 1382, 1540
BstMAI GTCTC 9 cut(s) 216, 408, 458, 503, 651, 838, 1117, 1317, 1655
BstMBI GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
BstMWI GCNNNNNNNGC 5 cut(s) 288, 964, 1329, 1525, 1565
BstNI CCWGG 5 cut(s) 941, 1061, 1069, 1095, 1174
BstSCI CCNGG 5 cut(s) 939, 1059, 1067, 1093, 1172
BstSFI CTRYAG 3 cut(s) 642, 685, 1662
BstSLI GKGCMC 3 cut(s) 480, 1022, 1570
BstSNI TACGTA 1 cut(s) 718
BstV1I GCAGC 4 cut(s) 105, 300, 1171, 1292
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 3 cut(s) 452, 670, 1379
BstYI RGATCY 3 cut(s) 452, 670, 1379
BstZ17I GTATAC 1 cut(s) 1551
BsuRI GGCC 3 cut(s) 55, 478, 1093
BtgZI GCGATG 1 cut(s) 429
BtrI CACGTC 1 cut(s) 1575
BtsCI GGATG 3 cut(s) 926, 1182, 1186
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 5 cut(s) 396, 805, 887, 969, 1014
Cac8I GCNNGC 1 cut(s) 642
CaiI CAGNNNCTG 1 cut(s) 1345
CfoI GCGC 2 cut(s) 342, 640
Cfr13I GGNCC 3 cut(s) 53, 476, 477
Csp6I GTAC 3 cut(s) 159, 771, 1257
CviAII CATG 5 cut(s) 57, 1118, 1286, 1373, 1421
CviQI GTAC 3 cut(s) 159, 771, 1257
DdeI CTNAG 8 cut(s) 190, 389, 399, 870, 979, 1125, 1500, 1643
DpnI GATC 9 cut(s) 454, 672, 744, 924, 1264, 1307, 1338, 1381, 1539
DpnII GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
DraIII CACNNNGTG 1 cut(s) 1121
Eco105I TACGTA 1 cut(s) 718
Eco24I GRGCYC 2 cut(s) 480, 1154
Eco31I GGTCTC 2 cut(s) 503, 1655
Eco57I CTGAAG 2 cut(s) 585, 1499
EcoRII CCWGG 5 cut(s) 939, 1059, 1067, 1093, 1172
EcoT38I GRGCYC 2 cut(s) 480, 1154
Esp3I CGTCTC 1 cut(s) 838
FaeI CATG 5 cut(s) 60, 1121, 1289, 1376, 1424
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 5 cut(s) 56, 1117, 1285, 1372, 1420
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 2 cut(s) 1193, 1550
Fnu4HI GCNGC 4 cut(s) 119, 289, 1185, 1281
FokI GGATG 3 cut(s) 913, 1189, 1193
FriOI GRGCYC 2 cut(s) 480, 1154
Fsp4HI GCNGC 4 cut(s) 119, 289, 1185, 1281
FspBI CTAG 3 cut(s) 299, 630, 1535
GlaI GCGC 2 cut(s) 341, 639
GluI GCNGC 4 cut(s) 119, 289, 1185, 1281
GsaI CCCAGC 1 cut(s) 1019
GsuI CTGGAG 2 cut(s) 1043, 1183
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 3 cut(s) 55, 478, 1093
HhaI GCGC 2 cut(s) 342, 640
Hin1II CATG 5 cut(s) 60, 1121, 1289, 1376, 1424
Hin6I GCGC 2 cut(s) 340, 638
HinP1I GCGC 2 cut(s) 340, 638
HincII GTYRAC 3 cut(s) 913, 954, 1194
HindII GTYRAC 3 cut(s) 913, 954, 1194
HindIII AAGCTT 1 cut(s) 1592
HinfI GANTC 8 cut(s) 401, 575, 614, 726, 818, 1033, 1064, 1467
HpaI GTTAAC 1 cut(s) 954
HphI GGTGA 2 cut(s) 57, 1569
Hpy166II GTNNAC 5 cut(s) 913, 954, 1139, 1194, 1551
Hpy188I TCNGA 7 cut(s) 46, 315, 580, 931, 1000, 1327, 1384
Hpy188III TCNNGA 3 cut(s) 1083, 1200, 1535
Hpy8I GTNNAC 5 cut(s) 913, 954, 1139, 1194, 1551
HpyAV CCTTC 4 cut(s) 89, 130, 716, 1370
HpyCH4III ACNGT 7 cut(s) 469, 626, 800, 882, 964, 1508, 1603
HpyCH4IV ACGT 3 cut(s) 717, 831, 1574
HpyCH4V TGCA 9 cut(s) 593, 644, 885, 967, 1007, 1147, 1232, 1280, 1664
HpyF10VI GCNNNNNNNGC 5 cut(s) 288, 964, 1329, 1525, 1565
HpyF3I CTNAG 8 cut(s) 190, 389, 399, 870, 979, 1125, 1500, 1643
HpySE526I ACGT 3 cut(s) 717, 831, 1574
Hsp92II CATG 5 cut(s) 60, 1121, 1289, 1376, 1424
HspAI GCGC 2 cut(s) 340, 638
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
LmnI GCTCC 6 cut(s) 173, 232, 704, 1012, 1062, 1533
Lsp1109I GCAGC 4 cut(s) 105, 300, 1171, 1292
LweI GCATC 4 cut(s) 580, 1171, 1214, 1568
MaeI CTAG 3 cut(s) 299, 630, 1535
MaeII ACGT 3 cut(s) 717, 831, 1574
MaeIII GTNAC 4 cut(s) 1237, 1341, 1575, 1603
MalI GATC 9 cut(s) 454, 672, 744, 924, 1264, 1307, 1338, 1381, 1539
MboI GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
MflI RGATCY 3 cut(s) 452, 670, 1379
MhlI GDGCHC 5 cut(s) 480, 1022, 1154, 1372, 1570
MluCI AATT 6 cut(s) 152, 249, 373, 665, 788, 1002
MlyI GAGTC 4 cut(s) 410, 623, 812, 1042
MmeI TCCRAC 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 1485
MseI TTAA 5 cut(s) 252, 935, 953, 1407, 1425
MspA1I CMGCKG 1 cut(s) 973
MspR9I CCNGG 5 cut(s) 941, 1061, 1069, 1095, 1174
MvaI CCWGG 5 cut(s) 941, 1061, 1069, 1095, 1174
MwoI GCNNNNNNNGC 5 cut(s) 288, 964, 1329, 1525, 1565
NdeII GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
NlaIII CATG 5 cut(s) 60, 1121, 1289, 1376, 1424
NlaIV GGNNCC 4 cut(s) 54, 478, 672, 1381
NmuCI GTSAC 1 cut(s) 1575
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 1485
PfeI GAWTC 4 cut(s) 575, 726, 1064, 1467
PfoI TCCNGGA 2 cut(s) 1059, 1067
PkrI GCNGC 4 cut(s) 120, 290, 1186, 1282
PleI GAGTC 4 cut(s) 409, 622, 812, 1041
PpsI GAGTC 4 cut(s) 409, 622, 812, 1041
Ppu21I YACGTR 1 cut(s) 718
Psp6I CCWGG 5 cut(s) 939, 1059, 1067, 1093, 1172
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 5 cut(s) 939, 1059, 1067, 1093, 1172
PspN4I GGNNCC 4 cut(s) 54, 478, 672, 1381
PspOMI GGGCCC 1 cut(s) 476
PspPI GGNCC 3 cut(s) 53, 476, 477
PstI CTGCAG 2 cut(s) 646, 1666
PstNI CAGNNNCTG 1 cut(s) 1345
PsuI RGATCY 3 cut(s) 452, 670, 1379
PvuII CAGCTG 1 cut(s) 973
RsaI GTAC 3 cut(s) 160, 772, 1258
RsaNI GTAC 3 cut(s) 159, 771, 1257
SalI GTCGAC 1 cut(s) 1192
SaqAI TTAA 5 cut(s) 252, 935, 953, 1407, 1425
SatI GCNGC 4 cut(s) 119, 289, 1185, 1281
Sau3AI GATC 9 cut(s) 452, 670, 742, 922, 1262, 1305, 1336, 1379, 1537
Sau96I GGNCC 3 cut(s) 53, 476, 477
ScaI AGTACT 2 cut(s) 160, 772
SchI GAGTC 4 cut(s) 410, 623, 812, 1042
ScrFI CCNGG 5 cut(s) 941, 1061, 1069, 1095, 1174
SduI GDGCHC 5 cut(s) 480, 1022, 1154, 1372, 1570
SfaNI GCATC 4 cut(s) 580, 1171, 1214, 1568
SfcI CTRYAG 3 cut(s) 642, 685, 1662
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SnaBI TACGTA 1 cut(s) 718
Sse9I AATT 6 cut(s) 152, 249, 373, 665, 788, 1002
SspMI CTAG 3 cut(s) 299, 630, 1535
StyD4I CCNGG 5 cut(s) 939, 1059, 1067, 1093, 1172
TaaI ACNGT 7 cut(s) 469, 626, 800, 882, 964, 1508, 1603
TaiI ACGT 3 cut(s) 720, 834, 1577
TaqI TCGA 3 cut(s) 131, 185, 1193
TasI AATT 6 cut(s) 152, 249, 373, 665, 788, 1002
TatI WGTACW 2 cut(s) 158, 770
TfiI GAWTC 4 cut(s) 575, 726, 1064, 1467
Tru1I TTAA 5 cut(s) 252, 935, 953, 1407, 1425
Tru9I TTAA 5 cut(s) 252, 935, 953, 1407, 1425
TscAI CASTG 5 cut(s) 403, 805, 887, 969, 1014
TseFI GTSAC 1 cut(s) 1575
TseI GCWGC 4 cut(s) 118, 288, 1184, 1280
Tsp45I GTSAC 1 cut(s) 1575
TspDTI ATGAA 6 cut(s) 284, 347, 564, 903, 1389, 1509
TspGWI ACGGA 3 cut(s) 351, 908, 1520
TspRI CASTG 5 cut(s) 403, 805, 887, 969, 1014
XapI RAATTY 2 cut(s) 373, 788
XbaI TCTAGA 1 cut(s) 1534
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 2 cut(s) 1193, 1550
XmnI GAANNNNTTC 1 cut(s) 1485
XspI CTAG 3 cut(s) 299, 630, 1535
ZrmI AGTACT 2 cut(s) 160, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.