Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Forward (+)

863288 .. 864685

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGGTAGTATTCCCCAGATTTAGAGACACCAAAGATATAGAGTTCAGACTTGGAGATTACTATGACGATCCTACAGTCTTGAGATACTTAGAGAGGCTGGACAGAACTAATGGTTCGCCCTTAGCTGCTGCTGCTGCCATTGTGAATATTGGAGCTGAGGCTACCGCAGTTCTTGGTAATTTCAAGGCAAGTGCCATTCAGGCATTGCAGAAGGTGTTTCCTCCGGGTCACAGGGATGAGAATCTTACACCTCAAGAAGATAATGAAATGAATTATGCATTTCTTCCTGTGGAAAATGGAGAGCCTCTGGAAGAATCTGATGGAGATGAATCTGTCCATGTGGCTGAGGTTTCTGGAAGAAATGGTTCTGTTGGAATACGTGAAGAAGAATTGATGACTGACAAAATCAAAGACGCAACTGTTAAGATTATGTTTGCTGGTGTGGTAATTGGACTGACAACGTGGATTGGATTGAGGTATTTACCCGCTAGGAGGGGCTCGTCCAACCTGCATAAAGAACTTAGCTCAGCGACTGCATCTGATGTCACAAGTGCAGGGCTACCAGGAGATGAAAAATCTGCAGAGGAAATACCAAAAATGGATGCAAGAATAGCTGAAGGTCTTGTTCGCAAATGGCAGAACATAAAATCTCAGGCTTTCGGGCCTAATCATTCTCTGGAAAAATTATCTGAGGTTTTGGATGGTGAGATGTTGAAGATATGGACAGATCGATCAACTGAGATTGCACAGCTTAATTGGTCCTATGAATACACCCTGTTGAACTTGAGCATCGACAGTGTGACTGTATCGCTGGACGGGCAGCGTGCTGTGGTGGAAGCAACTCTTGAAGAGATGGCCCAGTTAACCGATGTGCTCCATCCAGAGCACAATGACTCAAACAGAAGAACGTATACCACGAGATACGAGATGTCTTGTTCGAGCTCTGGATGGAAGATCATTGAAGGAGCTGTCCTCCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

329

Amino Acids

36.34

Weight (kDa)

4.75

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARC6	PF23468	1 - 53	3.1e-18	Plastid division regulator alpha solenoid domain
ARC6-like_IMS	PF13355	206 - 320	1.2e-34	ARC6-like, IMS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	914
AciI	CCGC	2 cut(s)	168, 489
AclWI	GGATC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	5 cut(s)	187, 718, 784, 851, 965
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	7 cut(s)	128, 158, 528, 617, 754, 945, 971
AluI	AGCT	7 cut(s)	128, 158, 528, 617, 754, 945, 971
Alw21I	GWGCWC	3 cut(s)	879, 891, 947
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	665, 858
ApeKI	GCWGC	5 cut(s)	128, 131, 134, 137, 823
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	665, 762, 859
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	762
BanII	GRGCYC	2 cut(s)	503, 947
BarI	GAAGNNNNNNTAC	2 cut(s)	898, 930
BauI	CACGAG	1 cut(s)	919
Bbv12I	GWGCWC	3 cut(s)	879, 891, 947
BbvCI	CCTCAGC	2 cut(s)	159, 348
BbvI	GCAGC	5 cut(s)	115, 118, 121, 124, 835
BccI	CCATC	5 cut(s)	317, 698, 850, 888, 945
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	75, 582
BfuAI	ACCTGC	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	5 cut(s)	129, 132, 135, 138, 824
BlpI	GCTNAGC	1 cut(s)	529
BlsI	GCNGC	5 cut(s)	130, 133, 136, 139, 825
Bme1390I	CCNGG	2 cut(s)	228, 567
Bme18I	GGWCC	1 cut(s)	762
BmgT120I	GGNCC	3 cut(s)	665, 762, 859
BmrFI	CCNGG	2 cut(s)	228, 567
BmrI	ACTGGG	1 cut(s)	856
BmsI	GCATC	3 cut(s)	548, 595, 801
BmuI	ACTGGG	1 cut(s)	856
BplI	GAGNNNNNCTC	1 cut(s)	960
Bpu10I	CCTNAGC	3 cut(s)	124, 159, 348
Bpu1102I	GCTNAGC	1 cut(s)	529
BpuEI	CTTGAG	3 cut(s)	103, 240, 808
BpuMI	CCSGG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	862
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	733
BseGI	GGATG	5 cut(s)	244, 610, 709, 880, 956
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	6 cut(s)	150, 339, 543, 668, 684, 732
BseNI	ACTGG	1 cut(s)	862
BseXI	GCAGC	5 cut(s)	115, 118, 121, 124, 835
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	667, 860
BshVI	ATCGAT	1 cut(s)	733
BsiHKAI	GWGCWC	3 cut(s)	879, 891, 947
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	667, 860
Bsp1286I	GDGCHC	4 cut(s)	503, 879, 891, 947
Bsp143I	GATC	4 cut(s)	70, 730, 734, 957
Bsp1720I	GCTNAGC	1 cut(s)	529
BspACI	CCGC	2 cut(s)	168, 489
BspANI	GGCC	2 cut(s)	667, 860
BspCNI	CTCAG	6 cut(s)	151, 340, 542, 667, 685, 733
BspDI	ATCGAT	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	862
BssMI	GATC	4 cut(s)	70, 730, 734, 957
BssNAI	GTATAC	1 cut(s)	915
BssSI	CACGAG	1 cut(s)	919
Bst1107I	GTATAC	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	919
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	4 cut(s)	79, 424, 800, 808
Bst6I	CTCTTC	1 cut(s)	846
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	9 cut(s)	91, 124, 159, 348, 524, 529, 654, 693, 741
BstF5I	GGATG	5 cut(s)	244, 610, 709, 880, 956
BstKTI	GATC	4 cut(s)	73, 733, 737, 960
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	70, 730, 734, 957
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 137, 203, 614, 820
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	226, 565
BstSFI	CTRYAG	2 cut(s)	75, 582
BstV1I	GCAGC	5 cut(s)	115, 118, 121, 124, 835
BstZ17I	GTATAC	1 cut(s)	915
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	667, 860
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	5 cut(s)	244, 610, 709, 880, 956
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	828
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	665, 762, 859
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	1 cut(s)	425
CviAII	CATG	1 cut(s)	341
DdeI	CTNAG	9 cut(s)	91, 124, 159, 348, 524, 529, 654, 693, 741
DpnI	GATC	4 cut(s)	72, 732, 736, 959
DpnII	GATC	4 cut(s)	70, 730, 734, 957
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	945
Eco24I	GRGCYC	2 cut(s)	503, 947
Eco47I	GGWCC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	503, 947
FaeI	CATG	1 cut(s)	344
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	914
Fnu4HI	GCNGC	5 cut(s)	129, 132, 135, 138, 824
FokI	GGATG	5 cut(s)	251, 617, 716, 867, 963
FriOI	GRGCYC	2 cut(s)	503, 947
Fsp4HI	GCNGC	5 cut(s)	129, 132, 135, 138, 824
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	5 cut(s)	129, 132, 135, 138, 824
HaeIII	GGCC	2 cut(s)	667, 860
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HinfI	GANTC	4 cut(s)	244, 317, 332, 896
HpaI	GTTAAC	1 cut(s)	867
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	867, 915
Hpy188I	TCNGA	4 cut(s)	50, 322, 544, 694
Hpy188III	TCNNGA	8 cut(s)	82, 257, 311, 357, 680, 848, 884, 948
Hpy8I	GTNNAC	2 cut(s)	867, 915
HpyAV	CCTTC	3 cut(s)	208, 614, 959
HpyCH4III	ACNGT	4 cut(s)	79, 424, 800, 808
HpyCH4IV	ACGT	3 cut(s)	382, 464, 911
HpyCH4V	TGCA	8 cut(s)	211, 281, 514, 539, 557, 584, 608, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 137, 203, 614, 820
HpyF3I	CTNAG	9 cut(s)	91, 124, 159, 348, 524, 529, 654, 693, 741
HpySE526I	ACGT	3 cut(s)	382, 464, 911
Hsp92II	CATG	1 cut(s)	344
KspAI	GTTAAC	1 cut(s)	867
Kzo9I	GATC	4 cut(s)	70, 730, 734, 957
LmnI	GCTCC	3 cut(s)	155, 882, 968
Lsp1109I	GCAGC	5 cut(s)	115, 118, 121, 124, 835
LweI	GCATC	3 cut(s)	548, 595, 801
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	3 cut(s)	382, 464, 911
MaeIII	GTNAC	3 cut(s)	230, 547, 802
MalI	GATC	4 cut(s)	72, 732, 736, 959
MboI	GATC	4 cut(s)	70, 730, 734, 957
MhlI	GDGCHC	4 cut(s)	503, 879, 891, 947
MluCI	AATT	6 cut(s)	181, 274, 392, 450, 686, 757
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	2 cut(s)	355, 531
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	3 cut(s)	426, 756, 866
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	228, 567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	5 cut(s)	134, 137, 203, 614, 820
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	70, 730, 734, 957
NlaIII	CATG	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	230, 547, 802
NsiI	ATGCAT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	244, 317, 332
PkrI	GCNGC	5 cut(s)	130, 133, 136, 139, 825
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
Ppu21I	YACGTR	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspPI	GGNCC	3 cut(s)	665, 762, 859
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	947
SaqAI	TTAA	3 cut(s)	426, 756, 866
SatI	GCNGC	5 cut(s)	129, 132, 135, 138, 824
Sau3AI	GATC	4 cut(s)	70, 730, 734, 957
Sau96I	GGNCC	3 cut(s)	665, 762, 859
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	2 cut(s)	228, 567
SduI	GDGCHC	4 cut(s)	503, 879, 891, 947
SfaNI	GCATC	3 cut(s)	548, 595, 801
SfcI	CTRYAG	2 cut(s)	75, 582
SinI	GGWCC	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	3 cut(s)	82, 255, 787
SmoI	CTYRAG	3 cut(s)	82, 255, 787
Sse9I	AATT	6 cut(s)	181, 274, 392, 450, 686, 757
SsiI	CCGC	2 cut(s)	168, 489
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	2 cut(s)	226, 565
TaaI	ACNGT	4 cut(s)	79, 424, 800, 808
TaiI	ACGT	3 cut(s)	385, 467, 914
TaqI	TCGA	3 cut(s)	733, 795, 941
TasI	AATT	6 cut(s)	181, 274, 392, 450, 686, 757
TfiI	GAWTC	3 cut(s)	244, 317, 332
Tru1I	TTAA	3 cut(s)	426, 756, 866
Tru9I	TTAA	3 cut(s)	426, 756, 866
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	3 cut(s)	230, 547, 802
TseI	GCWGC	5 cut(s)	128, 131, 134, 137, 823
Tsp45I	GTSAC	3 cut(s)	230, 547, 802
TspDTI	ATGAA	5 cut(s)	282, 287, 345, 588, 783
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	914
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.