Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Reverse (-)

62328860 .. 62332719

Gene Structure 3860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGGAGACCTTGACACACTTGGCCATTGGCTTCTACACCCCAAGACTCTCCGCCCCTTTCCCACACTCAAGAAAACCCCAAAAGCTCAGGCCGGCATTATGCTCCGCCAGCAAATGGGCCGACCGCCTCCTCGCCGACTTCCAATTCCTCGGCGACTCCTCCTCCTCCTCCTCAGACCACCATTCCACCACCGCCACTCTCGCTCCTCCTCCCAACCTGCCTCCCCCACTCGCTCCTCCCGAGCGCCACGTGTCCATCCCCCTCGACTTCTACCAGGTGCTCGGCACCCAGTCGCATTTCCTCGGCGACGGGATTAGGCGAGCTTACGAGGCTAGGGCTTCGAAGCCGCCTCAGTACGGCTTCACCCAAGACGCTTTGGTCAGCCGGAGACAGATTCTCCAGGCCGCCTGCGAAACCCTAGCCGACCCTACCTCCAGGAGAGAGTACAATCAGTCCCTCGTTGAAGACGGAGACGGAACAATTCTCACCGACGTTCCTTTTGATAAGGTTCCTGGAGCTCTTTGTGTGCTGCAAGAAGCTGGAAAGACGGAGCTGGTTCTTCAAATTGGGCAGAGTTTGCTGAGAGAGAGGCTGCCGAAATCGTTCAAGCAAGATGTGGTTTTGGTGATGGCACTTGCTTATGTTGACATGTCGAGGGACGCAATGGCATTGTCCCCACCGGATTTTATTCAGGGTTGTGAAGTGCTCGAGAGGGCTTTGAAGCTCTTGCAGGAGGAAGCTGCTAGCAGCCTTGCACCTGATCTTCAATCACAAATTGACGAGACACTGGAAGAGATCACCCCACGTTGCATTTTGGAACTTCTAGGTTTACCTCTTGATGAGGACTGCCAATCAAGAAGGGAAGAGGGCCTCCGTGGTGTCCGAAACATATTGTGGTCTGTTGGAGGAGGCGGAGCAGTTGCTCTTGCTGGGGGATTCACCCGTGACAGTTTCCTGAACGAGGTCTTTTTACGAATGACTGCAGCTGAACAGGTGGAACTATATGTATCAACACCAAAAAACATCCCAGCCGAAAGCTTTGAAGTTTATGGAGTGGCGCTTGCGCTTGTTGCTCAAGCCTTTGTTGGTAAAAAACCTAATCACATTCAAGATGCTGATAACCTGTTCTGGGAACTTCAGCAGAATAAGGTATCAGCTGTAGGACACTCTGTTAACGCCTATATAACCAATGAAAATAGTGAGATAGACTTTGCTTTGGAGAGGGGACTCTGTTCACTTCTTCTGGGGGATCTTGATGAGTGTCGCTCATGGTTGGGCCTAGACAATAATAATTCACCGTATAGAAATCCATCTGTAGTCGATTTTGTCTTGGAGAATGCTAAGGATGATGATGACAATGATCTTCCCGGACTTTGTAAGCTGTTGGAGACATGGTTGATGGAGGTGGTATTCCCCAGATTTAGAGACACCAAAGATATTGAGTTCAGCCTTGGTGATTATTATGATGATCCTACAGTCTTGAGATACTTAGAAAGGCTGGATGGAACTAATGGCTCACCCTTAGCTGCAGCAGCAGCCATAGTAAGGATCGGTGCTGAAGCTACTGCAGTTCTTGATAATGTCAAGGCCAGTGCAATTCAGGCCCTGTGGAAGGTCTTTCCTCTGGGTCAAAGAGATAAGAATATGACACCTCAAGAAGATCATGAGATGAATTATTCTCTTCTTCCTGAAGACAGTGGAGACCCTTTGGAAGAATCCTATGAAGATGATTCTATTCGTGTTGCTGAGGTTTCTGGAAGAGATGGTTCTGTTGATACACTTAAAGAAGAATCAATTACTGAGCAAATCAAAGATGCAAGTGTGAAGATTATGTGTGCTGGTGTGGTAATTGGACTACTGACTTTTGTTGGATTGAAGTATTTACCCGGCAGGAATAGCTCATCCAATCTACGTAAAAAACTTGGTTCAGTGACTGCATCTGATGTCACTAGTTCAGGGTTACCAGTAGATGTTAAGTCTGCAGAGGAATTACCCAAAATGGACGCACAAATTGCCGAAGGTCTAGTTCGGAAATGGCAGAACATAAAATCTCAGGCTTTTGGACCTGGGCATTCCGTGGATAAATTGTCAGAGGTATTGGATGGTGAGATGTTGAAGATATGGACAGATCGTGCAACTGAAATTGCACAGCTAAATTGGTCCTATGATTACACCCTTTTGAACTTGAGCATTGACAGTGTAACAGTGTCGCTAGATGGGCAGCGTGCTGTGGTGGAAGCAACTCTTGAAGAATTAGCCCAATTAACTGATGTGCTCCATCCAGAGCATGATGCCTCGAATAGCAGAACATACACTACAAGATATGAGATGTCTTGTTCAAGCTCAGGATGGAAAATCACTGAAGGAGCTGTCCTCCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

794

Amino Acids

87.3

Weight (kDa)

4.67

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	164 - 305	3e-51	Plastid division regulator ARM repeat
ARC6	PF23468	325 - 519	5e-90	Plastid division regulator alpha solenoid domain
ARC6-like_IMS	PF13355	672 - 787	1.4e-33	ARC6-like, IMS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	114
AciI	CCGC	7 cut(s)	51, 105, 124, 192, 347, 405, 912
AclWI	GGATC	3 cut(s)	1257, 1463, 1556
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	4 cut(s)	1121, 1578, 1710, 2382
AcvI	CACGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	356, 446
AfiI	CCNNNNNNNGG	6 cut(s)	114, 356, 961, 1129, 1545, 1612
AflIII	ACRYGT	2 cut(s)	249, 648
AhlI	ACTAGT	1 cut(s)	1949
AjnI	CCWGG	5 cut(s)	273, 399, 434, 511, 2065
Alw21I	GWGCWC	4 cut(s)	282, 520, 708, 2277
Alw26I	GTCTC	6 cut(s)	382, 465, 776, 1382, 1419, 1695
AlwI	GGATC	3 cut(s)	1257, 1463, 1556
AlwNI	CAGNNNCTG	2 cut(s)	1606, 1934
Ama87I	CYCGRG	2 cut(s)	239, 707
AoxI	GGCC	8 cut(s)	21, 89, 117, 402, 868, 1276, 1587, 1602
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	1 cut(s)	602
AspLEI	GCGC	3 cut(s)	246, 1060, 1066
AspS9I	GGNCC	6 cut(s)	117, 868, 1276, 1603, 2063, 2160
AsuC2I	CCSGG	2 cut(s)	1368, 1887
AsuHPI	GGTGA	9 cut(s)	355, 478, 637, 790, 931, 1287, 1466, 1509, 2117
AsuII	TTCGAA	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	2 cut(s)	239, 707
AvaII	GGWCC	2 cut(s)	2063, 2160
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	520
BbrPI	CACGTG	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	471, 1698
Bbv12I	GWGCWC	4 cut(s)	282, 520, 708, 2277
BbvCI	CCTCAGC	1 cut(s)	1746
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	5 cut(s)	275, 401, 436, 513, 2067
BcnI	CCSGG	2 cut(s)	1368, 1887
BcoDI	GTCTC	6 cut(s)	382, 465, 776, 1382, 1419, 1695
BcuI	ACTAGT	1 cut(s)	1949
BfaI	CTAG	8 cut(s)	333, 419, 744, 824, 1280, 1950, 2024, 2213
BfmI	CTRYAG	7 cut(s)	981, 1158, 1314, 1473, 1527, 1566, 1980
BfoI	RGCGCY	2 cut(s)	247, 1061
BfuAI	ACCTGC	1 cut(s)	225
Bme1390I	CCNGG	7 cut(s)	275, 401, 436, 513, 1368, 1887, 2067
Bme18I	GGWCC	2 cut(s)	2063, 2160
BmeT110I	CYCGRG	2 cut(s)	239, 707
BmgT120I	GGNCC	6 cut(s)	117, 868, 1276, 1603, 2063, 2160
BmiI	GGNNCC	2 cut(s)	286, 510
BmrFI	CCNGG	7 cut(s)	275, 401, 436, 513, 1368, 1887, 2067
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	4 cut(s)	1102, 1804, 1946, 2281
BmtI	GCTAGC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	471, 1698
BplI	GAGNNNNNCTC	3 cut(s)	1250, 1282, 2358
BpmI	CTGGAG	3 cut(s)	383, 418, 534
Bpu10I	CCTNAGC	5 cut(s)	86, 1341, 1522, 1746, 2344
Bpu14I	TTCGAA	1 cut(s)	341
BpuEI	CTTGAG	5 cut(s)	52, 1059, 1501, 1638, 2206
BpuMI	CCSGG	2 cut(s)	1368, 1887
BsaAI	YACGTR	2 cut(s)	250, 1913
BsaI	GGTCTC	1 cut(s)	1695
BsaJI	CCNNGG	6 cut(s)	148, 301, 874, 1450, 2066, 2076
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 356, 961, 1129, 1545, 1612
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	4 cut(s)	289, 792, 1590, 1964
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	5 cut(s)	275, 401, 436, 513, 2067
BseDI	CCNNGG	6 cut(s)	148, 301, 874, 1450, 2066, 2076
BseGI	GGATG	8 cut(s)	255, 1023, 1351, 1507, 1901, 2107, 2278, 2354
BseLI	CCNNNNNNNGG	6 cut(s)	114, 356, 961, 1129, 1545, 1612
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	8 cut(s)	100, 186, 365, 572, 1737, 1791, 2066, 2358
BseNI	ACTGG	4 cut(s)	289, 792, 1590, 1964
BseYI	CCCAGC	2 cut(s)	929, 1027
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	8 cut(s)	23, 91, 119, 404, 870, 1278, 1589, 1604
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	4 cut(s)	282, 520, 708, 2277
BsiHKCI	CYCGRG	2 cut(s)	239, 707
BsiSI	CCGG	5 cut(s)	92, 385, 680, 1368, 1887
BslFI	GGGAC	4 cut(s)	439, 658, 671, 1239
BslI	CCNNNNNNNGG	6 cut(s)	114, 356, 961, 1129, 1545, 1612
BsmAI	GTCTC	6 cut(s)	382, 465, 776, 1382, 1419, 1695
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	4 cut(s)	439, 658, 671, 1239
BsmI	GAATGC	2 cut(s)	1342, 2071
BsnI	GGCC	8 cut(s)	23, 91, 119, 404, 870, 1278, 1589, 1604
Bso31I	GGTCTC	1 cut(s)	1695
BsoBI	CYCGRG	2 cut(s)	239, 707
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	4 cut(s)	282, 520, 708, 2277
Bsp143I	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
BspACI	CCGC	7 cut(s)	51, 105, 124, 192, 347, 405, 912
BspANI	GGCC	8 cut(s)	23, 91, 119, 404, 870, 1278, 1589, 1604
BspCNI	CTCAG	8 cut(s)	99, 185, 364, 573, 1738, 1792, 2065, 2357
BspHI	TCATGA	2 cut(s)	1663, 2381
BspLI	GGNNCC	2 cut(s)	286, 510
BspMAI	CTGCAG	4 cut(s)	985, 1531, 1570, 1984
BspMI	ACCTGC	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	747
BspPI	GGATC	3 cut(s)	1257, 1463, 1556
BspT104I	TTCGAA	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	1695
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	4 cut(s)	289, 792, 1590, 1964
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	6 cut(s)	148, 301, 874, 1450, 2066, 2076
BssMI	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
BssT1I	CCWWGG	1 cut(s)	1450
Bst2UI	CCWGG	5 cut(s)	275, 401, 436, 513, 2067
Bst4CI	ACNGT	6 cut(s)	950, 1299, 1477, 1697, 2198, 2206
Bst6I	CTCTTC	4 cut(s)	786, 858, 1686, 1753
BstAPI	GCANNNNNTGC	2 cut(s)	577, 2012
BstBAI	YACGTR	2 cut(s)	250, 1913
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	7 cut(s)	93, 109, 321, 409, 745, 1062, 2226
BstDSI	CCRYGG	2 cut(s)	874, 2076
BstEII	GGTNACC	1 cut(s)	1959
BstENI	CCTNNNNNAGG	2 cut(s)	959, 1610
BstF5I	GGATG	8 cut(s)	255, 1023, 1351, 1507, 1901, 2107, 2278, 2354
BstH2I	RGCGCY	2 cut(s)	247, 1061
BstHHI	GCGC	3 cut(s)	246, 1060, 1066
BstKTI	GATC	8 cut(s)	763, 798, 1252, 1363, 1471, 1551, 1663, 2131
BstMAI	GTCTC	6 cut(s)	382, 465, 776, 1382, 1419, 1695
BstMBI	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	5 cut(s)	275, 401, 436, 513, 2067
BstNSI	RCATGY	1 cut(s)	652
BstPI	GGTNACC	1 cut(s)	1959
BstSCI	CCNGG	7 cut(s)	273, 399, 434, 511, 1366, 1885, 2065
BstSFI	CTRYAG	7 cut(s)	981, 1158, 1314, 1473, 1527, 1566, 1980
BstSNI	TACGTA	1 cut(s)	1913
BstV2I	GAAGAC	2 cut(s)	471, 1698
BstX2I	RGATCY	1 cut(s)	1249
BstYI	RGATCY	1 cut(s)	1249
BsuRI	GGCC	8 cut(s)	23, 91, 119, 404, 870, 1278, 1589, 1604
BtgI	CCRYGG	2 cut(s)	874, 2076
BtsCI	GGATG	8 cut(s)	255, 1023, 1351, 1507, 1901, 2107, 2278, 2354
BtsIMutI	CAGTG	7 cut(s)	785, 1597, 1702, 1935, 2203, 2211, 2358
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	7 cut(s)	93, 109, 321, 409, 745, 1062, 2226
CaiI	CAGNNNCTG	2 cut(s)	1606, 1934
CciI	TCATGA	2 cut(s)	1663, 2381
CfoI	GCGC	3 cut(s)	246, 1060, 1066
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	6 cut(s)	117, 868, 1276, 1603, 2063, 2160
CseI	GACGC	3 cut(s)	380, 668, 2012
CsiI	ACCWGGT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	355, 445
CviAII	CATG	6 cut(s)	649, 1269, 1392, 1664, 2288, 2382
CviQI	GTAC	2 cut(s)	355, 445
DpnI	GATC	8 cut(s)	762, 797, 1251, 1362, 1470, 1550, 1662, 2130
DpnII	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	4 cut(s)	786, 858, 1686, 1753
EarI	CTCTTC	4 cut(s)	786, 858, 1686, 1753
EciI	GGCGGA	3 cut(s)	40, 94, 927
Ecl136II	GAGCTC	1 cut(s)	518
Eco105I	TACGTA	1 cut(s)	1913
Eco130I	CCWWGG	1 cut(s)	1450
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	1695
Eco47I	GGWCC	2 cut(s)	2063, 2160
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	4 cut(s)	1121, 1578, 1710, 2382
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	2 cut(s)	239, 707
Eco91I	GGTNACC	1 cut(s)	1959
EcoICRI	GAGCTC	1 cut(s)	518
EcoNI	CCTNNNNNAGG	2 cut(s)	959, 1610
EcoO109I	RGGNCCY	2 cut(s)	868, 1603
EcoO65I	GGTNACC	1 cut(s)	1959
EcoRII	CCWGG	5 cut(s)	273, 399, 434, 511, 2065
EcoT14I	CCWWGG	1 cut(s)	1450
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	1450
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	6 cut(s)	652, 1272, 1395, 1667, 2291, 2385
FalI	AAGNNNNNCTT	2 cut(s)	2229, 2261
FaqI	GGGAC	4 cut(s)	439, 658, 671, 1239
FatI	CATG	6 cut(s)	648, 1268, 1391, 1663, 2287, 2381
FokI	GGATG	8 cut(s)	242, 1010, 1358, 1514, 1888, 2114, 2265, 2361
FriOI	GRGCYC	1 cut(s)	520
FspBI	CTAG	8 cut(s)	333, 419, 744, 824, 1280, 1950, 2024, 2213
GlaI	GCGC	3 cut(s)	245, 1059, 1065
GsaI	CCCAGC	2 cut(s)	933, 1031
GsuI	CTGGAG	3 cut(s)	383, 418, 534
HaeII	RGCGCY	2 cut(s)	247, 1061
HaeIII	GGCC	8 cut(s)	23, 91, 119, 404, 870, 1278, 1589, 1604
HapII	CCGG	5 cut(s)	92, 385, 680, 1368, 1887
HgaI	GACGC	3 cut(s)	380, 668, 2012
HhaI	GCGC	3 cut(s)	246, 1060, 1066
Hin1II	CATG	6 cut(s)	652, 1272, 1395, 1667, 2291, 2385
Hin6I	GCGC	3 cut(s)	244, 1058, 1064
HinP1I	GCGC	3 cut(s)	244, 1058, 1064
HincII	GTYRAC	2 cut(s)	646, 1174
HindII	GTYRAC	2 cut(s)	646, 1174
HindIII	AAGCTT	1 cut(s)	1036
HinfI	GANTC	8 cut(s)	45, 155, 394, 936, 1227, 1715, 1730, 1790
HpaI	GTTAAC	1 cut(s)	1174
HpaII	CCGG	5 cut(s)	92, 385, 680, 1368, 1887
HphI	GGTGA	9 cut(s)	355, 478, 637, 790, 931, 1287, 1466, 1509, 2117
Hpy166II	GTNNAC	4 cut(s)	646, 830, 1174, 1235
Hpy188I	TCNGA	5 cut(s)	175, 884, 1942, 2031, 2092
Hpy8I	GTNNAC	4 cut(s)	646, 830, 1174, 1235
Hpy99I	CGWCG	2 cut(s)	311, 494
HpyAV	CCTTC	4 cut(s)	852, 1606, 2012, 2357
HpyCH4III	ACNGT	6 cut(s)	950, 1299, 1477, 1697, 2198, 2206
HpyCH4IV	ACGT	4 cut(s)	249, 492, 805, 1912
HpySE526I	ACGT	4 cut(s)	249, 492, 805, 1912
Hsp92II	CATG	6 cut(s)	652, 1272, 1395, 1667, 2291, 2385
HspAI	GCGC	3 cut(s)	244, 1058, 1064
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	1174
Kzo9I	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
LmnI	GCTCC	8 cut(s)	107, 208, 238, 515, 550, 914, 2280, 2366
LweI	GCATC	4 cut(s)	1102, 1804, 1946, 2281
MabI	ACCWGGT	1 cut(s)	273
MaeI	CTAG	8 cut(s)	333, 419, 744, 824, 1280, 1950, 2024, 2213
MaeII	ACGT	4 cut(s)	249, 492, 805, 1912
MaeIII	GTNAC	5 cut(s)	944, 1930, 1945, 1959, 2200
MalI	GATC	8 cut(s)	762, 797, 1251, 1362, 1470, 1550, 1662, 2130
MboI	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
MflI	RGATCY	1 cut(s)	1249
MhlI	GDGCHC	4 cut(s)	282, 520, 708, 2277
MlsI	TGGCCA	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	3 cut(s)	39, 149, 1221
MmeI	TCCRAC	3 cut(s)	883, 1365, 1849
Mox20I	TGGCCA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	4 cut(s)	1173, 1782, 1974, 2264
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	986, 1157
MspI	CCGG	5 cut(s)	92, 385, 680, 1368, 1887
MspR9I	CCNGG	7 cut(s)	275, 401, 436, 513, 1368, 1887, 2067
Mva1269I	GAATGC	2 cut(s)	1342, 2071
MvaI	CCWGG	5 cut(s)	275, 401, 436, 513, 2067
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	1368, 1887
NdeII	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
NgoMIV	GCCGGC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	6 cut(s)	652, 1272, 1395, 1667, 2291, 2385
NlaIV	GGNNCC	2 cut(s)	286, 510
NmeAIII	GCCGAG	3 cut(s)	129, 261, 282
NmuCI	GTSAC	3 cut(s)	944, 1930, 1945
NspI	RCATGY	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	341
PaeR7I	CTCGAG	1 cut(s)	707
PagI	TCATGA	2 cut(s)	1663, 2381
PciI	ACATGT	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	2 cut(s)	1342, 2071
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	5 cut(s)	394, 936, 1715, 1730, 1790
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	3 cut(s)	434, 511, 1366
PleI	GAGTC	3 cut(s)	39, 149, 1221
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	3 cut(s)	39, 149, 1221
Ppu21I	YACGTR	2 cut(s)	250, 1913
PscI	ACATGT	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	5 cut(s)	273, 399, 434, 511, 2065
PspCI	CACGTG	1 cut(s)	250
PspEI	GGTNACC	1 cut(s)	1959
PspFI	CCCAGC	2 cut(s)	929, 1027
PspGI	CCWGG	5 cut(s)	273, 399, 434, 511, 2065
PspN4I	GGNNCC	2 cut(s)	286, 510
PspPI	GGNCC	6 cut(s)	117, 868, 1276, 1603, 2063, 2160
PsrI	GAACNNNNNNTAC	2 cut(s)	2299, 2331
PstI	CTGCAG	4 cut(s)	985, 1531, 1570, 1984
PstNI	CAGNNNCTG	2 cut(s)	1606, 1934
PsuI	RGATCY	1 cut(s)	1249
PvuII	CAGCTG	2 cut(s)	986, 1157
RsaI	GTAC	2 cut(s)	356, 446
RsaNI	GTAC	2 cut(s)	355, 445
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	1173, 1782, 1974, 2264
Sau3AI	GATC	8 cut(s)	760, 795, 1249, 1360, 1468, 1548, 1660, 2128
Sau96I	GGNCC	6 cut(s)	117, 868, 1276, 1603, 2063, 2160
SchI	GAGTC	3 cut(s)	39, 149, 1221
ScrFI	CCNGG	7 cut(s)	275, 401, 436, 513, 1368, 1887, 2067
SduI	GDGCHC	4 cut(s)	282, 520, 708, 2277
SexAI	ACCWGGT	1 cut(s)	273
SfaNI	GCATC	4 cut(s)	1102, 1804, 1946, 2281
SfcI	CTRYAG	7 cut(s)	981, 1158, 1314, 1473, 1527, 1566, 1980
Sfr274I	CTCGAG	1 cut(s)	707
SfuI	TTCGAA	1 cut(s)	341
SinI	GGWCC	2 cut(s)	2063, 2160
SlaI	CTCGAG	1 cut(s)	707
SmlI	CTYRAG	6 cut(s)	67, 707, 1074, 1480, 1653, 2185
SmoI	CTYRAG	6 cut(s)	67, 707, 1074, 1480, 1653, 2185
SnaBI	TACGTA	1 cut(s)	1913
SpeI	ACTAGT	1 cut(s)	1949
SsiI	CCGC	7 cut(s)	51, 105, 124, 192, 347, 405, 912
SspMI	CTAG	8 cut(s)	333, 419, 744, 824, 1280, 1950, 2024, 2213
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	7 cut(s)	273, 399, 434, 511, 1366, 1885, 2065
StyI	CCWWGG	1 cut(s)	1450
TaaI	ACNGT	6 cut(s)	950, 1299, 1477, 1697, 2198, 2206
TaiI	ACGT	4 cut(s)	252, 495, 808, 1915
TaqI	TCGA	6 cut(s)	264, 341, 653, 708, 1320, 2297
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	349, 407
TfiI	GAWTC	5 cut(s)	394, 936, 1715, 1730, 1790
Tru1I	TTAA	4 cut(s)	1173, 1782, 1974, 2264
Tru9I	TTAA	4 cut(s)	1173, 1782, 1974, 2264
TscAI	CASTG	7 cut(s)	792, 1597, 1702, 1935, 2203, 2211, 2365
TseFI	GTSAC	3 cut(s)	944, 1930, 1945
Tsp45I	GTSAC	3 cut(s)	944, 1930, 1945
TspDTI	ATGAA	3 cut(s)	1206, 1685, 1737
TspGWI	ACGGA	5 cut(s)	483, 489, 563, 863, 2065
TspRI	CASTG	7 cut(s)	792, 1597, 1702, 1935, 2203, 2211, 2365
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	2063, 2160
XagI	CCTNNNNNAGG	2 cut(s)	959, 1610
XceI	RCATGY	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	8 cut(s)	333, 419, 744, 824, 1280, 1950, 2024, 2213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.