Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025484.1

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 331

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025484.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggagaccttgacacacttggccattggcttctacaccccaagactctccgcccctttcccacactcaagaaaaccccaaaagctcaggcccgcattatgctccgccagcaaatgggccgaccgcctcctcgccgacttccaattcctcggcgactcctcctcagaccaccattccaccaccgccactctcgctcctcctcctcccaatccgcctcccccactcgctcctcccgagcgccacgtgtccatccccctcgacttctaccaggtactcggcacccagtcgcatttcctcggcgacgggattaggcgagcttacgaggctagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

110

Amino Acids

12.18

Weight (kDa)

8.98

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	114
AciI	CCGC	6 cut(s)	51, 93, 105, 124, 183, 212
AcoI	YGGCCR	1 cut(s)	21
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	85, 317
AluI	AGCT	2 cut(s)	85, 317
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	21, 89, 117
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	90, 117
AvaI	CYCGRG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	278
BbrPI	CACGTG	1 cut(s)	244
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	90, 117
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	148, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	148, 295
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	100, 177
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	7 cut(s)	119, 148, 151, 186, 189, 192, 219
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	23, 91, 119
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	114
BsnI	GGCC	3 cut(s)	23, 91, 119
BsoBI	CYCGRG	1 cut(s)	233
BspACI	CCGC	6 cut(s)	51, 93, 105, 124, 183, 212
BspANI	GGCC	3 cut(s)	23, 91, 119
BspCNI	CTCAG	2 cut(s)	99, 176
BspLI	GGNNCC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	148, 295
Bst2UI	CCWGG	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	93, 109, 315
BstDEI	CTNAG	2 cut(s)	86, 163
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 191, 323
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	23, 91, 119
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	93, 109, 315
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	90, 117
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	272
CviJI	RGCY	7 cut(s)	23, 30, 85, 91, 119, 317, 326
CviKI_1	RGCY	7 cut(s)	23, 30, 85, 91, 119, 317, 326
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	86, 163
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	3 cut(s)	40, 94, 201
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	267
FaiI	YATR	1 cut(s)	100
FauI	CCCGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	23, 91, 119
HhaI	GCGC	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	45, 155
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	69, 233
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 191, 323
HpyF3I	CTNAG	2 cut(s)	86, 163
HpySE526I	ACGT	1 cut(s)	243
HspAI	GCGC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	107, 199, 232
LpnPI	CCDG	5 cut(s)	73, 121, 254, 281, 296
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	39, 149
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	108, 191, 323
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	3 cut(s)	129, 255, 276
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	114
PleI	GAGTC	2 cut(s)	39, 149
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	2 cut(s)	39, 149
Ppu21I	YACGTR	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	90, 117
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	90, 117
SchI	GAGTC	2 cut(s)	39, 149
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	5 cut(s)	11, 87, 246, 273, 319
SexAI	ACCWGGT	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	6 cut(s)	51, 93, 105, 124, 183, 212
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	267
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	114
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.