Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041248.1

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2112

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041248.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

gtactcggcacccagtcgcatttcctcggcgacgggattaggcgagcttacgaggctagggcttcgaagccgcctcagtacggcttcacccaagacgctttggtcagccggagacagattctccaggccgcctgcgaaaccctagccgaccctgcctccagaagagagtacaatcagtccctcgttgaagacgaagacggaacaattctcaccgacgttccttttgataaggttcctggagctctttgtgtgctgcaagaagctggaaagacggagctggttcttcaaattgggcacagtttgctgagagagaggctgcccaaatcgttcaagcaagatgtggttttggtgatggcacttgcttatgttgacatgtcgagggacgcaatggcattgtccccaccggattttattcagggttgtgaagtgctcgagagggctttgaagctcttgcaggaggaaggtgctagcagccttgcacctgatcttcagtcacaaattgacgagacactggaagagatcaccccacgttgcattttggaacttctaggtttaccccttgatgaggactaccaatcaagaagggaagagggcctccgtggtgtccgaaacatattgtggtctgttggaggaggcggagcagttgctcttgctgggggattcacccgtgacagtttcctgaacgaggtctttttacgaatgactgcagctgaacaggtggaactatatgtatcaacaccaaaaaacatcccagccgaaagctttgaagtttatggagtggcgcttgcgctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

264

Amino Acids

28.98

Weight (kDa)

4.62

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	3 cut(s)	71, 129, 636
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	3 cut(s)	3, 80, 170
AfiI	CCNNNNNNNGG	3 cut(s)	80, 565, 685
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	5 cut(s)	188, 287, 331, 445, 767
AjnI	CCWGG	2 cut(s)	123, 235
AluBI	AGCT	7 cut(s)	47, 242, 263, 277, 448, 710, 762
AluI	AGCT	7 cut(s)	47, 242, 263, 277, 448, 710, 762
Alw21I	GWGCWC	2 cut(s)	244, 432
Alw26I	GTCTC	2 cut(s)	106, 500
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	126, 592
ApeKI	GCWGC	4 cut(s)	253, 316, 471, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	2 cut(s)	784, 790
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	5 cut(s)	79, 202, 361, 514, 655
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	195, 201
Bbv12I	GWGCWC	2 cut(s)	244, 432
BbvI	GCAGC	4 cut(s)	240, 303, 483, 719
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	125, 237
BcoDI	GTCTC	2 cut(s)	106, 500
BfaI	CTAG	4 cut(s)	57, 143, 468, 548
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	785
BisI	GCNGC	6 cut(s)	71, 129, 254, 317, 472, 708
BlsI	GCNGC	6 cut(s)	72, 130, 255, 318, 473, 709
Bme1390I	CCNGG	2 cut(s)	125, 237
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	10, 234
BmrFI	CCNGG	2 cut(s)	125, 237
BmrI	ACTGGG	1 cut(s)	7
BmtI	GCTAGC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	7
BpiI	GAAGAC	2 cut(s)	195, 201
BpmI	CTGGAG	3 cut(s)	107, 142, 258
Bpu14I	TTCGAA	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	25, 598
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 565, 685
Bse1I	ACTGG	2 cut(s)	13, 516
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	125, 237
BseDI	CCNNGG	2 cut(s)	25, 598
BseGI	GGATG	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	80, 565, 685
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	89, 296
BseNI	ACTGG	2 cut(s)	13, 516
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	240, 303, 483, 719
BseYI	CCCAGC	2 cut(s)	653, 751
BshFI	GGCC	2 cut(s)	128, 594
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	2 cut(s)	244, 432
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	109, 404
BslFI	GGGAC	3 cut(s)	163, 382, 395
BslI	CCNNNNNNNGG	3 cut(s)	80, 565, 685
BsmAI	GTCTC	2 cut(s)	106, 500
BsmFI	GGGAC	3 cut(s)	163, 382, 395
BsnI	GGCC	2 cut(s)	128, 594
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	244, 297, 432
Bsp143I	GATC	2 cut(s)	484, 519
BspACI	CCGC	3 cut(s)	71, 129, 636
BspANI	GGCC	2 cut(s)	128, 594
BspCNI	CTCAG	2 cut(s)	88, 297
BspLI	GGNNCC	2 cut(s)	10, 234
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	471
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	13, 516
BssECI	CCNNGG	2 cut(s)	25, 598
BssMI	GATC	2 cut(s)	484, 519
Bst2UI	CCWGG	2 cut(s)	125, 237
Bst4CI	ACNGT	2 cut(s)	299, 674
Bst6I	CTCTTC	3 cut(s)	157, 510, 582
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	45, 133, 469, 786
BstDEI	CTNAG	2 cut(s)	75, 305
BstDSI	CCRYGG	1 cut(s)	598
BstENI	CCTNNNNNAGG	2 cut(s)	563, 683
BstF5I	GGATG	1 cut(s)	747
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	2 cut(s)	784, 790
BstKTI	GATC	2 cut(s)	487, 522
BstMAI	GTCTC	2 cut(s)	106, 500
BstMBI	GATC	2 cut(s)	484, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 152, 301
BstNI	CCWGG	2 cut(s)	125, 237
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	123, 235
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	240, 303, 483, 719
BstV2I	GAAGAC	2 cut(s)	195, 201
BsuRI	GGCC	2 cut(s)	128, 594
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	4 cut(s)	45, 133, 469, 786
CfoI	GCGC	2 cut(s)	784, 790
Cfr13I	GGNCC	1 cut(s)	592
CseI	GACGC	2 cut(s)	104, 392
Csp6I	GTAC	3 cut(s)	2, 79, 169
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	3 cut(s)	2, 79, 169
DdeI	CTNAG	2 cut(s)	75, 305
DpnI	GATC	2 cut(s)	486, 521
DpnII	GATC	2 cut(s)	484, 519
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	3 cut(s)	157, 510, 582
EarI	CTCTTC	3 cut(s)	157, 510, 582
EciI	GGCGGA	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	242
EcoNI	CCTNNNNNAGG	2 cut(s)	563, 683
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	123, 235
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	366, 374, 614, 727, 729, 774
FaqI	GGGAC	3 cut(s)	163, 382, 395
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	6 cut(s)	71, 129, 254, 317, 472, 708
FokI	GGATG	1 cut(s)	734
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	6 cut(s)	71, 129, 254, 317, 472, 708
FspBI	CTAG	4 cut(s)	57, 143, 468, 548
GlaI	GCGC	2 cut(s)	783, 789
GluI	GCNGC	6 cut(s)	71, 129, 254, 317, 472, 708
GsaI	CCCAGC	2 cut(s)	657, 755
GsuI	CTGGAG	3 cut(s)	107, 142, 258
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	2 cut(s)	128, 594
HapII	CCGG	2 cut(s)	109, 404
HgaI	GACGC	2 cut(s)	104, 392
HhaI	GCGC	2 cut(s)	784, 790
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	2 cut(s)	782, 788
HinP1I	GCGC	2 cut(s)	782, 788
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	2 cut(s)	118, 660
HpaII	CCGG	2 cut(s)	109, 404
HphI	GGTGA	5 cut(s)	79, 202, 361, 514, 655
Hpy166II	GTNNAC	2 cut(s)	370, 554
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	4 cut(s)	159, 433, 579, 679
Hpy8I	GTNNAC	2 cut(s)	370, 554
Hpy99I	CGWCG	2 cut(s)	35, 218
HpyAV	CCTTC	2 cut(s)	455, 576
HpyCH4III	ACNGT	2 cut(s)	299, 674
HpyCH4IV	ACGT	2 cut(s)	216, 529
HpyCH4V	TGCA	5 cut(s)	256, 454, 479, 534, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 152, 301
HpyF3I	CTNAG	2 cut(s)	75, 305
HpySE526I	ACGT	2 cut(s)	216, 529
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	2 cut(s)	782, 788
Kzo9I	GATC	2 cut(s)	484, 519
LmnI	GCTCC	3 cut(s)	239, 274, 638
Lsp1109I	GCAGC	4 cut(s)	240, 303, 483, 719
MaeI	CTAG	4 cut(s)	57, 143, 468, 548
MaeII	ACGT	2 cut(s)	216, 529
MaeIII	GTNAC	2 cut(s)	492, 668
MalI	GATC	2 cut(s)	486, 521
MboI	GATC	2 cut(s)	484, 519
MboII	GAAGA	7 cut(s)	174, 200, 206, 275, 479, 527, 599
MhlI	GDGCHC	3 cut(s)	244, 297, 432
MluCI	AATT	3 cut(s)	204, 288, 498
MmeI	TCCRAC	1 cut(s)	607
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	2 cut(s)	109, 404
MspR9I	CCNGG	2 cut(s)	125, 237
MvaI	CCWGG	2 cut(s)	125, 237
MwoI	GCNNNNNNNGC	3 cut(s)	53, 152, 301
NdeII	GATC	2 cut(s)	484, 519
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	10, 234
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	492, 668
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	431
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	118, 660
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	6 cut(s)	72, 130, 255, 318, 473, 709
PscI	ACATGT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	123, 235
PspFI	CCCAGC	2 cut(s)	653, 751
PspGI	CCWGG	2 cut(s)	123, 235
PspN4I	GGNNCC	2 cut(s)	10, 234
PspPI	GGNCC	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	3, 80, 170
RsaNI	GTAC	3 cut(s)	2, 79, 169
SacI	GAGCTC	1 cut(s)	244
SatI	GCNGC	6 cut(s)	71, 129, 254, 317, 472, 708
Sau3AI	GATC	2 cut(s)	484, 519
Sau96I	GGNCC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	125, 237
SduI	GDGCHC	3 cut(s)	244, 297, 432
SfcI	CTRYAG	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	204, 288, 498
SsiI	CCGC	3 cut(s)	71, 129, 636
SspMI	CTAG	4 cut(s)	57, 143, 468, 548
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	123, 235
TaaI	ACNGT	2 cut(s)	299, 674
TaiI	ACGT	2 cut(s)	219, 532
TaqI	TCGA	3 cut(s)	65, 377, 432
TasI	AATT	3 cut(s)	204, 288, 498
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	73, 131
TfiI	GAWTC	2 cut(s)	118, 660
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	492, 668
TseI	GCWGC	4 cut(s)	253, 316, 471, 707
Tsp45I	GTSAC	2 cut(s)	492, 668
TspGWI	ACGGA	3 cut(s)	213, 287, 587
TspRI	CASTG	1 cut(s)	516
XagI	CCTNNNNNAGG	2 cut(s)	563, 683
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	431
XspI	CTAG	4 cut(s)	57, 143, 468, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.