Rw6G036840

Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
61232342 .. 61236211
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036840.1

Sequence Viewer

Length: 1758 bp
ATGGCACTTGCTTATGTTGACATGTCGAGGGACGCAATGGCATTGTCCCCACCGGATTTTATTCAGGGTTGTGAAGTGCTCGAGAGGGCTTTGAAGCTCTTGCAGGAGGAAGGTGCTAGCAGCCTTGCACCTGATCTTCAGTCACAAATTGACGAGACACTGGAAGAGATCACCCCACGTTGCATTTTGGAACTTCTAGGTTTACCCCTTGATGAGGACTACCAATCAAGAAGGGAAGAGGGCCTCCGTGGTGTCCGAAACATATTGTGGTCTGTTGGAGGAGGCGGAGCAGTTGCTCTTGCTGGGGGATTCACCCGTGACAGTTTCCTGAACGAGGTCTTTTTACGAATGACTGCAGCTGAACAGGTGGAACTATATGTATCAACACCAAAAAACATCCCAGCCGAAAGCTTTGAAGTTTATGGAGTGGCGCTTGCGCTTGTTGCTCAAGCCTTTGTTGGTAAAAAACCTAATCACATTCAAGATGCTGATAACCTGTTCTGGGAACTTCAGCAGAATAAGGTGTCAGCTGTAGGACACTCTGTTAACACCTATATAACCAATGAAAATAGTGAGATAGACTTTGCTTTGGAGAGGGGACTCTGTTCACTTCTTCTGGGGGATCTTGATGAGTGTCGCTCATGGTTGGGCCTAGACAATAATAATTCACCGTATAGAAATCCATCTGTAGTCGATTTTGTCTTGGAGAATGCTAAGGATGATGATGACAATGATCTTCCCGGACTTTGTAAGCTGTTGGAGACATGGTTGATGGAGGTGGTATTCCCCAGATTTAGAGACACCAAAGATATTGAGTTCAGCCTTGGTGATTATTATGATGATCCTACAGTCTTGAGATACTTAGAAAGGCTGGATGGAACTAATGGCTCACCCTTAGCTGCAGCAGCAGCCATAGTAAGGATCGGTGCTGAAGCTACTGCAGTTCTTGATAATGTCAAGGCCAGTGCAATTCAGGCCCTGTGGAAGGTGTTTCCTCTGGGTCAAAGAGATAAGAATATGACACCTCAAGAAGATCATGAGATGAATTATTCTCTTCTTCCTGAAGACAGTGGAGACCCTTTGGAAGAATCCTATGAAGATGATTCTATTCGTGTTGCTGAGGTTTCTGGAAGAGATGGTTCTGTGGACACACTTAAAGAAGAATCAATTACTGAGCAAATCAAAGATGCAAGTGTGAAAATTATGTGTGCTGGTGTGGTAATTGGACTACTGACTTTTGTTGGATTGAAGTATTTACCCGGCAGGAATAGCTCATCCAATCTACGTAAAGAACTTAGTTCAGTGACTGCATCTGATGTCACTAGTTCAGGGCTACCAGTAGATGTTAAGTCTGCAGAGGATTTACCCAAAATGGACGCACAAATTGCCGAAGGTCTAGTTCGGAAATGGCAGAACATAAAATCTCAGGCTTTTGGACCTGGGCATTCCGTGGATAAATTGTCAGAGGCATTGGATGGTGAGATGTTGAAGATATGGACAGATCGTGCAACTGAAATTGCACAGCTAAATTGGTCCTATGATTACTCCCTTTTGAACTTGAGCATTGACAGTGTAACAGTGTCGCTAGATGGGCAGCGTGCTGTGGTGGAAGCAACTCTTGAAGAATTAGCCCAATTAACTGATGTGCTCCATCCAGAGCATGATGCCTCGAATAGCAGAACATACACTACAAGATATGAGATGTCTTGTTCAAGCTCAGGATGGAAAATCACTGAAGGAGCTGTCCTCCAATCATGA

Protein Analysis

585

Amino Acids

64.36

Weight (kDa)

4.39

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm_PDR PF25515 1 - 96 1.9e-30 Plastid division regulator ARM repeat
ARC6 PF23468 116 - 310 2.4e-90 Plastid division regulator alpha solenoid domain
ARC6-like_IMS PF13355 463 - 578 1.2e-32 ARC6-like, IMS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 3 cut(s) 630, 836, 929
AcuI CTGAAG 5 cut(s) 122, 494, 951, 1083, 1755
AfiI CCNNNNNNNGG 5 cut(s) 214, 334, 502, 918, 985
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 8 cut(s) 94, 416, 482, 1249, 1489, 1555, 1622, 1713
AhlI ACTAGT 1 cut(s) 1322
AjnI CCWGG 1 cut(s) 1438
Alw21I GWGCWC 2 cut(s) 81, 1650
Alw26I GTCTC 4 cut(s) 149, 755, 792, 1068
AlwI GGATC 3 cut(s) 630, 836, 929
AlwNI CAGNNNCTG 2 cut(s) 979, 1307
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 4 cut(s) 241, 649, 960, 975
ApeKI GCWGC 7 cut(s) 120, 356, 899, 902, 905, 908, 1594
AspLEI GCGC 2 cut(s) 433, 439
AspS9I GGNCC 5 cut(s) 241, 649, 976, 1436, 1533
AsuC2I CCSGG 2 cut(s) 741, 1260
AsuHPI GGTGA 6 cut(s) 163, 304, 660, 839, 882, 1490
AsuNHI GCTAGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 1436, 1533
BbsI GAAGAC 1 cut(s) 1071
Bbv12I GWGCWC 2 cut(s) 81, 1650
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 7 cut(s) 132, 368, 886, 914, 917, 920, 1606
BccI CCATC 8 cut(s) 691, 766, 869, 1130, 1469, 1583, 1659, 1716
BciT130I CCWGG 1 cut(s) 1440
BcnI CCSGG 2 cut(s) 741, 1260
BcoDI GTCTC 4 cut(s) 149, 755, 792, 1068
BcuI ACTAGT 1 cut(s) 1322
BfaI CTAG 6 cut(s) 117, 197, 653, 1323, 1397, 1586
BfmI CTRYAG 7 cut(s) 354, 531, 687, 846, 900, 939, 1353
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 7 cut(s) 121, 357, 900, 903, 906, 909, 1595
BlsI GCNGC 7 cut(s) 122, 358, 901, 904, 907, 910, 1596
Bme1390I CCNGG 3 cut(s) 741, 1260, 1440
Bme18I GGWCC 2 cut(s) 1436, 1533
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 5 cut(s) 241, 649, 976, 1436, 1533
BmrFI CCNGG 3 cut(s) 741, 1260, 1440
BmsI GCATC 4 cut(s) 475, 1177, 1319, 1654
BmtI GCTAGC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 1071
BplI GAGNNNNNCTC 3 cut(s) 623, 655, 1731
Bpu10I CCTNAGC 4 cut(s) 714, 895, 1119, 1717
BpuEI CTTGAG 4 cut(s) 432, 874, 1011, 1579
BpuMI CCSGG 2 cut(s) 741, 1260
BsaAI YACGTR 1 cut(s) 1286
BsaI GGTCTC 1 cut(s) 1068
BsaJI CCNNGG 4 cut(s) 247, 823, 1439, 1449
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 334, 502, 918, 985
Bse1I ACTGG 3 cut(s) 165, 963, 1337
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 1440
BseDI CCNNGG 4 cut(s) 247, 823, 1439, 1449
BseGI GGATG 7 cut(s) 396, 724, 880, 1274, 1480, 1651, 1727
BseLI CCNNNNNNNGG 5 cut(s) 214, 334, 502, 918, 985
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 4 cut(s) 1110, 1164, 1439, 1731
BseNI ACTGG 3 cut(s) 165, 963, 1337
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 7 cut(s) 132, 368, 886, 914, 917, 920, 1606
BseYI CCCAGC 2 cut(s) 302, 400
BshFI GGCC 4 cut(s) 243, 651, 962, 977
BsiHKAI GWGCWC 2 cut(s) 81, 1650
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 3 cut(s) 53, 741, 1260
BslFI GGGAC 3 cut(s) 31, 44, 612
BslI CCNNNNNNNGG 5 cut(s) 214, 334, 502, 918, 985
BsmAI GTCTC 4 cut(s) 149, 755, 792, 1068
BsmFI GGGAC 3 cut(s) 31, 44, 612
BsmI GAATGC 2 cut(s) 715, 1444
BsnI GGCC 4 cut(s) 243, 651, 962, 977
Bso31I GGTCTC 1 cut(s) 1068
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 81, 1650
Bsp143I GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
BspACI CCGC 1 cut(s) 285
BspANI GGCC 4 cut(s) 243, 651, 962, 977
BspCNI CTCAG 4 cut(s) 1111, 1165, 1438, 1730
BspHI TCATGA 2 cut(s) 1036, 1754
BspMAI CTGCAG 4 cut(s) 358, 904, 943, 1357
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 3 cut(s) 630, 836, 929
BspTNI GGTCTC 1 cut(s) 1068
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 3 cut(s) 165, 963, 1337
BssECI CCNNGG 4 cut(s) 247, 823, 1439, 1449
BssMI GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
BssT1I CCWWGG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 1440
Bst4CI ACNGT 6 cut(s) 323, 672, 850, 1070, 1571, 1579
Bst6I CTCTTC 4 cut(s) 159, 231, 1059, 1126
BstAPI GCANNNNNTGC 1 cut(s) 1385
BstBAI YACGTR 1 cut(s) 1286
BstC8I GCNNGC 3 cut(s) 118, 435, 1599
BstDEI CTNAG 8 cut(s) 714, 862, 895, 1119, 1173, 1295, 1425, 1717
BstDSI CCRYGG 2 cut(s) 247, 1449
BstENI CCTNNNNNAGG 3 cut(s) 212, 332, 983
BstF5I GGATG 7 cut(s) 396, 724, 880, 1274, 1480, 1651, 1727
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 2 cut(s) 433, 439
BstKTI GATC 8 cut(s) 136, 171, 625, 736, 844, 924, 1036, 1504
BstMAI GTCTC 4 cut(s) 149, 755, 792, 1068
BstMBI GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
BstMWI GCNNNNNNNGC 7 cut(s) 443, 905, 908, 974, 1269, 1385, 1591
BstNI CCWGG 1 cut(s) 1440
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 739, 1258, 1438
BstSFI CTRYAG 7 cut(s) 354, 531, 687, 846, 900, 939, 1353
BstSNI TACGTA 1 cut(s) 1286
BstV1I GCAGC 7 cut(s) 132, 368, 886, 914, 917, 920, 1606
BstV2I GAAGAC 1 cut(s) 1071
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 4 cut(s) 243, 651, 962, 977
BtgI CCRYGG 2 cut(s) 247, 1449
BtsCI GGATG 7 cut(s) 396, 724, 880, 1274, 1480, 1651, 1727
BtsIMutI CAGTG 7 cut(s) 158, 970, 1075, 1308, 1576, 1584, 1731
Cac8I GCNNGC 3 cut(s) 118, 435, 1599
CaiI CAGNNNCTG 2 cut(s) 979, 1307
CciI TCATGA 2 cut(s) 1036, 1754
CfoI GCGC 2 cut(s) 433, 439
Cfr13I GGNCC 5 cut(s) 241, 649, 976, 1436, 1533
CseI GACGC 2 cut(s) 41, 1385
CviAII CATG 6 cut(s) 22, 642, 765, 1037, 1661, 1755
DdeI CTNAG 8 cut(s) 714, 862, 895, 1119, 1173, 1295, 1425, 1717
DpnI GATC 8 cut(s) 135, 170, 624, 735, 843, 923, 1035, 1503
DpnII GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
Eam1104I CTCTTC 4 cut(s) 159, 231, 1059, 1126
EarI CTCTTC 4 cut(s) 159, 231, 1059, 1126
EciI GGCGGA 1 cut(s) 300
Eco105I TACGTA 1 cut(s) 1286
Eco130I CCWWGG 1 cut(s) 823
Eco31I GGTCTC 1 cut(s) 1068
Eco47I GGWCC 2 cut(s) 1436, 1533
Eco57I CTGAAG 5 cut(s) 122, 494, 951, 1083, 1755
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 3 cut(s) 212, 332, 983
EcoO109I RGGNCCY 2 cut(s) 241, 976
EcoRII CCWGG 1 cut(s) 1438
EcoT14I CCWWGG 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 823
FaeI CATG 6 cut(s) 25, 645, 768, 1040, 1664, 1758
FalI AAGNNNNNCTT 2 cut(s) 1602, 1634
FaqI GGGAC 3 cut(s) 31, 44, 612
FatI CATG 6 cut(s) 21, 641, 764, 1036, 1660, 1754
Fnu4HI GCNGC 7 cut(s) 121, 357, 900, 903, 906, 909, 1595
FokI GGATG 7 cut(s) 383, 731, 887, 1261, 1487, 1638, 1734
Fsp4HI GCNGC 7 cut(s) 121, 357, 900, 903, 906, 909, 1595
FspBI CTAG 6 cut(s) 117, 197, 653, 1323, 1397, 1586
GlaI GCGC 2 cut(s) 432, 438
GluI GCNGC 7 cut(s) 121, 357, 900, 903, 906, 909, 1595
GsaI CCCAGC 2 cut(s) 306, 404
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 4 cut(s) 243, 651, 962, 977
HapII CCGG 3 cut(s) 53, 741, 1260
HgaI GACGC 2 cut(s) 41, 1385
HhaI GCGC 2 cut(s) 433, 439
Hin1II CATG 6 cut(s) 25, 645, 768, 1040, 1664, 1758
Hin6I GCGC 2 cut(s) 431, 437
HinP1I GCGC 2 cut(s) 431, 437
HincII GTYRAC 2 cut(s) 19, 547
HindII GTYRAC 2 cut(s) 19, 547
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 5 cut(s) 309, 600, 1088, 1103, 1163
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 3 cut(s) 53, 741, 1260
HphI GGTGA 6 cut(s) 163, 304, 660, 839, 882, 1490
Hpy166II GTNNAC 5 cut(s) 19, 203, 547, 608, 1147
Hpy188I TCNGA 4 cut(s) 257, 1315, 1404, 1465
Hpy8I GTNNAC 5 cut(s) 19, 203, 547, 608, 1147
HpyAV CCTTC 5 cut(s) 104, 225, 979, 1385, 1730
HpyCH4III ACNGT 6 cut(s) 323, 672, 850, 1070, 1571, 1579
HpyCH4IV ACGT 2 cut(s) 178, 1285
HpyF10VI GCNNNNNNNGC 7 cut(s) 443, 905, 908, 974, 1269, 1385, 1591
HpyF3I CTNAG 8 cut(s) 714, 862, 895, 1119, 1173, 1295, 1425, 1717
HpySE526I ACGT 2 cut(s) 178, 1285
Hsp92II CATG 6 cut(s) 25, 645, 768, 1040, 1664, 1758
HspAI GCGC 2 cut(s) 431, 437
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
LmnI GCTCC 3 cut(s) 287, 1653, 1739
Lsp1109I GCAGC 7 cut(s) 132, 368, 886, 914, 917, 920, 1606
LweI GCATC 4 cut(s) 475, 1177, 1319, 1654
MaeI CTAG 6 cut(s) 117, 197, 653, 1323, 1397, 1586
MaeII ACGT 2 cut(s) 178, 1285
MaeIII GTNAC 5 cut(s) 141, 317, 1303, 1318, 1573
MalI GATC 8 cut(s) 135, 170, 624, 735, 843, 923, 1035, 1503
MboI GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 81, 1650
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 3 cut(s) 256, 738, 1222
MseI TTAA 4 cut(s) 546, 1155, 1347, 1637
MspA1I CMGCKG 2 cut(s) 359, 530
MspI CCGG 3 cut(s) 53, 741, 1260
MspR9I CCNGG 3 cut(s) 741, 1260, 1440
Mva1269I GAATGC 2 cut(s) 715, 1444
MvaI CCWGG 1 cut(s) 1440
MwoI GCNNNNNNNGC 7 cut(s) 443, 905, 908, 974, 1269, 1385, 1591
NciI CCSGG 2 cut(s) 741, 1260
NdeII GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 25, 645, 768, 1040, 1664, 1758
NmuCI GTSAC 4 cut(s) 141, 317, 1303, 1318
NspI RCATGY 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 80
PagI TCATGA 2 cut(s) 1036, 1754
PciI ACATGT 1 cut(s) 21
PctI GAATGC 2 cut(s) 715, 1444
PfeI GAWTC 4 cut(s) 309, 1088, 1103, 1163
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 7 cut(s) 122, 358, 901, 904, 907, 910, 1596
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
Ppu21I YACGTR 1 cut(s) 1286
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 1438
PspFI CCCAGC 2 cut(s) 302, 400
PspGI CCWGG 1 cut(s) 1438
PspPI GGNCC 5 cut(s) 241, 649, 976, 1436, 1533
PsrI GAACNNNNNNTAC 2 cut(s) 1672, 1704
PstI CTGCAG 4 cut(s) 358, 904, 943, 1357
PstNI CAGNNNCTG 2 cut(s) 979, 1307
PsuI RGATCY 1 cut(s) 622
PvuII CAGCTG 2 cut(s) 359, 530
SaqAI TTAA 4 cut(s) 546, 1155, 1347, 1637
SatI GCNGC 7 cut(s) 121, 357, 900, 903, 906, 909, 1595
Sau3AI GATC 8 cut(s) 133, 168, 622, 733, 841, 921, 1033, 1501
Sau96I GGNCC 5 cut(s) 241, 649, 976, 1436, 1533
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 3 cut(s) 741, 1260, 1440
SduI GDGCHC 2 cut(s) 81, 1650
SfaNI GCATC 4 cut(s) 475, 1177, 1319, 1654
SfcI CTRYAG 7 cut(s) 354, 531, 687, 846, 900, 939, 1353
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 2 cut(s) 1436, 1533
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 5 cut(s) 80, 447, 853, 1026, 1558
SmoI CTYRAG 5 cut(s) 80, 447, 853, 1026, 1558
SnaBI TACGTA 1 cut(s) 1286
SpeI ACTAGT 1 cut(s) 1322
SsiI CCGC 1 cut(s) 285
SspMI CTAG 6 cut(s) 117, 197, 653, 1323, 1397, 1586
StyD4I CCNGG 3 cut(s) 739, 1258, 1438
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 6 cut(s) 323, 672, 850, 1070, 1571, 1579
TaiI ACGT 2 cut(s) 181, 1288
TaqI TCGA 4 cut(s) 26, 81, 693, 1670
TfiI GAWTC 4 cut(s) 309, 1088, 1103, 1163
Tru1I TTAA 4 cut(s) 546, 1155, 1347, 1637
Tru9I TTAA 4 cut(s) 546, 1155, 1347, 1637
TscAI CASTG 7 cut(s) 165, 970, 1075, 1308, 1576, 1584, 1738
TseFI GTSAC 4 cut(s) 141, 317, 1303, 1318
TseI GCWGC 7 cut(s) 120, 356, 899, 902, 905, 908, 1594
Tsp45I GTSAC 4 cut(s) 141, 317, 1303, 1318
TspDTI ATGAA 3 cut(s) 579, 1058, 1110
TspGWI ACGGA 2 cut(s) 236, 1438
TspRI CASTG 7 cut(s) 165, 970, 1075, 1308, 1576, 1584, 1738
VpaK11BI GGWCC 2 cut(s) 1436, 1533
XagI CCTNNNNNAGG 3 cut(s) 212, 332, 983
XceI RCATGY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 80
XspI CTAG 6 cut(s) 117, 197, 653, 1323, 1397, 1586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.